LOC103040455 (sept8,LOC108435605,LOC103023804)


Basic Information

Item Value
gene id LOC103040455
gene name sept8,LOC108435605,LOC103023804
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5091878 ~ 5117839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253633.2
ttcatttttttttcaatatggtGTAGCTCTAGCCCTAAATCTCAGTGTCCTTCAAAGCGTATGCTTCattctaaaattaaacatttcacaccaaacactTTGAAGGAACTTTTCACATCTCATCATAATGTAATTGAATTGTgcatactttttaaatgttgttggaCTTCTCTTAAAGTGAGTTCAGAGTGCAGATCTCTTCAGTGTGAGGAAAAGTGGAGCTGCCAAGTTTGTGGAGGATGGCATGTAAACTGCCTGATCTGCATTCTAATTCAGAGGGTGGTGCCATCGAGCGGCTGCAGTGAGCGACACAGAGAGAGTTTCAGTAGCAGGACAGATAGAAACCTCCACCTCCCGTCACTGACAGCTGACTGTCCTGCATCAGAATGGCTGCACTGGACGTGGGCCTGCTCCCTACTGAAGAGAAGAGGACGCTGACCCTCTGTGGCCATGTTGGTTTTGACAGCCTTCCTGACCAGCTAGTGAGCAAATCAGTGTCCCAGGGCTTCTGCTTCAACATCCTCTGTGTAGGTGAAACAGGGATCGGTAAATCCACGCTGATGAACACGCTCTTCAACACAACCTTTGAGAACGAAGAGGCCAGCCACCACCAGAACACTGTGTATTTACGACCCAGGACCTACAACCTGCAGGAGAGCAATGTGGACCTCAAGCTGACCATAGTGGATACCGTGGGGTTCGGTGATCAGATCAATAAAGAGGAGAGCTACAAGCCCATACTGGACTACATTGATAACCAGTTTGAAAACTTCCTCCAAGAGGAGCTGAAAATTAAACGTTCGCTGCATAATTACCACGACACCAGGATTCACATCTGCCTGTACTTCATCTCCCCTACGGGCCATTCACTTAGGTCTCTCGATCTCGTCACCATGAAGAAGCTGGACAGTaagGTGAACCTTATTCCCCTGATCGCGAAGGCAGATACCATCTCCAAGTGTGAGCTTCACAAGTTTAAGATTAAAGTCATGAGTGAGCTGGTCAGTAACGGCGTTCAGATTTATCAATTTCCAACAGACGATGAAGCTGTGACGGAAATCAACTCCACTATGAATGCACATCTGCCGTTTGCTGTGGTGGGGAGCAGTGAGGAGGTTAAAGTTGGGAATAAGATGGTTCGAGCCAGACAGTTCCCGTGGGGAGTGGTGCAGGTGGAGAACGAGAGCCACTGTGATTTTGTAAAGCTGAGAGAGATGCTGCTTCGGGTGAATATGGAAGATCTGCGGGAGCAGACGCACGCACGCCATTATGAGCTGTACCGCCGCTGCAAGCTGGAGGAGATGGGCTTTAAAGACTCGAACACTGATGCACAGCCATTCAGTCTGCAGGATGTTTACGTGGCCAAGAGAAGGGAGTTTGTGGCTGAACTGCAGCGCAGCGAGGAGGACATGCGGCAGATGTTTGTCAATAAAGTGAAGGAGACGGAGGCGGagttaaaagagagagaaagagagcTGCACGAGCGTTTTGAGCAGCTGAAGCGTCTGCATCAGGAGGAGAAGCGTAGTCTGGAGCAGAAGCGGcgagagctggaggaggagatgAACTCGTTCAGCAGGAGGAAGGTGGCGGCGGAGGCGTTGCAGGCCTGCACACTGCAGAgctccatcacacacaccatcaAAAAGGAGAAAGACAAGAGAAACTTCTTTAGTCTTCCGTCAGCTCTCTCCTTCACCACAGAGAGGAATGTGAATTaggatctgaatctgaatcaggATTGTTGTGTGATGTGTAACTAACAGGCTGGTGTGGAGTCTGGTCTCATTCAATCGTTTTGacctttttttaatctattttaatctattattatttatttttttatgaattgtgatcttcttatttcatgttatgatatttttatttgcattgtttgttaGAATTGTAAACATTCAAATCTAAATATTTCAATTTTAACTTCAGTTGATTTATACacttatatttaacattattgcATTTTCTGCTTTTGTATTCGGTAGCCCCaggttttaatgtttgtgtcattttttctttgttgtaattttttataTGGACTTGTTTTAATTTCCCTGCTCTACTTTTGAATCTTATTTTTTAACTCACTACTATCAATCCCTTCTTCTAAATGTGAGGGTTTTCATCAATGTATtcagagtgtgaataaaaaaatggatttaataA
>XM_007253634.2
atttttttttcaatatggtGTAGCTCTAGCCCTAAATCTCAGTGTCCTTCAAAGCGTATGCTTCattctaaaattaaacatttcacaccaaacactTTGAAGGAACTTTTCACATCTCATCATAATGTAATTGAATTGTgcatactttttaaatgttgttggaCTTCTCTTAAAGTGAGTTCAGAGTGCAGATCTCTTCAGTGTGAGGAAAAGTGGAGCTGCCAAGTTTGTGGAGGATGGCATGTAAACTGCCTGATCTGCATTCTAATTCAGAGGGTGGTGCCATCGAGCGGCTGCAGTGAGCGACACAGAGAGAGTTTCAGTAGCAGGACAGATAGAAACCTCCACCTCCCGTCACTGACAGCTGACTGTCCTGCATCAGAATGGCTGCACTGGACGTGGGCCTGCTCCCTACTGAAGAGAAGAGGACGCTGACCCTCTGTGGCCATGTTGGTTTTGACAGCCTTCCTGACCAGCTAGTGAGCAAATCAGTGTCCCAGGGCTTCTGCTTCAACATCCTCTGTGTAGGTGAAACAGGGATCGGTAAATCCACGCTGATGAACACGCTCTTCAACACAACCTTTGAGAACGAAGAGGCCAGCCACCACCAGAACACTGTGTATTTACGACCCAGGACCTACAACCTGCAGGAGAGCAATGTGGACCTCAAGCTGACCATAGTGGATACCGTGGGGTTCGGTGATCAGATCAATAAAGAGGAGAGCTACAAGCCCATACTGGACTACATTGATAACCAGTTTGAAAACTTCCTCCAAGAGGAGCTGAAAATTAAACGTTCGCTGCATAATTACCACGACACCAGGATTCACATCTGCCTGTACTTCATCTCCCCTACGGGCCATTCACTTAGGTCTCTCGATCTCGTCACCATGAAGAAGCTGGACAGTaagGTGAACCTTATTCCCCTGATCGCGAAGGCAGATACCATCTCCAAGTGTGAGCTTCACAAGTTTAAGATTAAAGTCATGAGTGAGCTGGTCAGTAACGGCGTTCAGATTTATCAATTTCCAACAGACGATGAAGCTGTGACGGAAATCAACTCCACTATGAATGCACATCTGCCGTTTGCTGTGGTGGGGAGCAGTGAGGAGGTTAAAGTTGGGAATAAGATGGTTCGAGCCAGACAGTTCCCGTGGGGAGTGGTGCAGGTGGAGAACGAGAGCCACTGTGATTTTGTAAAGCTGAGAGAGATGCTGCTTCGGGTGAATATGGAAGATCTGCGGGAGCAGACGCACGCACGCCATTATGAGCTGTACCGCCGCTGCAAGCTGGAGGAGATGGGCTTTAAAGACTCGAACACTGATGCACAGCCATTCAGTCTGCAGGATGTTTACGTGGCCAAGAGAAGGGAGTTTGTGGCTGAACTGCAGCGCAGCGAGGAGGACATGCGGCAGATGTTTGTCAATAAAGTGAAGGAGACGGAGGCGGagttaaaagagagagaaagagagcTGCACGAGCGTTTTGAGCAGCTGAAGCGTCTGCATCAGGAGGAGAAGCGTAGTCTGGAGCAGAAGCGGcgagagctggaggaggagatgAACTCGTTCAGCAGGAGGAAGGTGGCGGCGGAGGCGTTGCAGGCCTGCACACTGCAGAgctccatcacacacaccatcaAAAAGGAGAAAGACAAGAGAAAttgatTTTTGCACGCTTTCTAAGCCCTGCTTGAagcactccacacacactcacgtggTTTACAGTGACACCAGCACACAATGGACCAGCTTCTGAGAGGGCAGCGGATGGGTCGTCATTAAAAATGGAATTTAAATATG

Function

NR:

description
PREDICTED: septin-8-A-like isoform X1

GO: NA

KEGG:

id description
K16939 SEPT6_8_11; septin 6/8/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253633.2 True 2181 mRNA 0.44 10 5091878 5117839
XM_007253634.2 False 1802 mRNA 0.49 10 5091881 5112015

Neighbor

gene id symbol gene type direction distance location
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding upstream 9272 5068901 ~ 5082606 (+)
cfap69 cfap69 coding upstream 24371 5048506 ~ 5067507 (+)
LOC111193046 NA coding upstream 111856 4979467 ~ 4980022 (+)
LOC111193076 NA coding upstream 134852 4956279 ~ 4957026 (+)
dnajc8 dnajc8,LOC102775708 coding upstream 136989 4943206 ~ 4954889 (+)
ccng1 ccng1,LOC107745080 coding downstream 6115 5123954 ~ 5130557 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding downstream 25926 5143765 ~ 5173256 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding downstream 64664 5182503 ~ 5313658 (+)
atp10b NA coding downstream 221811 5339650 ~ 5408015 (+)
atp7a atp7a,LOC101485317 coding downstream 312850 5430689 ~ 5476431 (+)
G71260 NA non-coding upstream 48120 5001091 ~ 5043758 (+)
G71248 NA non-coding upstream 85653 4958156 ~ 5006225 (+)
G71256 NA non-coding upstream 98699 4990852 ~ 4993179 (+)
G71246 NA non-coding upstream 122959 4963971 ~ 4968919 (+)
G71244 NA non-coding upstream 149761 4941409 ~ 4942117 (+)
G71287 nudcd2 non-coding downstream 15896 5133735 ~ 5137567 (+)
G71294 NA non-coding downstream 87377 5205216 ~ 5207077 (+)
G71304 NA non-coding downstream 177839 5295678 ~ 5298321 (+)
G71397 NA non-coding downstream 205830 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 291192 5409031 ~ 5410313 (+)
G71247 NA other upstream 111867 4956298 ~ 4980011 (+)
G71249 NA other upstream 123971 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 170058 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 649947 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1517120 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 382069 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 554879 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 753251 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1407802 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1763748 6881587 ~ 6885541 (+)

Expression


Co-expression Network