LOC103044251


Basic Information

Item Value
gene id LOC103044251
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5491422 ~ 5494564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253644.3
tGAATTATCCCCGGTTTTCTGGGTTTTTCAGCGTCACGGCCGGCCGGGTCGGGTGTTAATTAGGGACcggtgtgtgagtgagagggCGGCGGAAGTGTATCCGGGGCTGATCTGAGCTCTGCGGTCAGTAAGCTGAAGTTAAAGTGTGCCGGTTTCTCCGCGATGGCTCCGCCGCCGTGTGTTCCGTTCCCCCGCTTCACCGCGCTGGTGCCGGTGGCGGTGGTCGTGCTGTGGGTGGTCGCGGGGTCGGGCCTGGCGCTCCTCGGTAACGGGGTGCAGCCGGACAGCCTGGCTCATCACGGGAACATCCTGAGCCCGCTGCTGAAAGCCCTGTCCGAGCAGGAGCCGTGGGGGGCCGCGGAGCCCCGGACCCGGCCCCGGCCCGACTCCCGGTACGTCCGTTTCATGAAGCGGCTCTACAAGCTCTCCTCCAGACCCGAGAGGAGCCACGAGACCGAGCAGCTCTACAACACCGTGCGCCTCATCACCCCCAGACAGGAGTGCCTGAGCCACAGCACAGaaTATTTCACACAGGACATCTCCTACAGCTTGGACCGCGTCCGAGCCCAGGAGCACCTACTCAAGTCTGTGCTACTCTACTCCGTCAACCATAACCTTGCAGCCTCCCTCGCCTCCATCTGCTACCTGCACGTGAAGGAGCACATGCCCTCAGACGACCGCGTCTGCCTACACCCCCACAGCTCCTCCCGCCTGGCCACGGCAGTCACCTTCCACGTCCGGTCGGAGAGAGCTGGTCGGCGCAAGTGGGCAGAGGTGGACGTGACCCCCTTCCTCCAACCGCTGATCCGGAGCCACAGGAAGGACCTCCACCTGCTCCTCAACCTCACCTGCCCAGAGCACGGGATCCACGGACGCCCTGGTAGAAGCCCCCTGGAGCTCTCGCACGTGGCACCATCGCTTCTGTTGTATCTCAACGATACCAGTGAGGTGGCCTATCGGAGGAGCTCTGCACACAGCAGGTTCGGAAGCTTCAGATCAAACCACTGGGATGCAAAGCCCCTCCGGCACGATCACCATTCCGGATCAGAGCAGCACACATGGAGGGATCGCAGGAGCACTCTGAACAGCACTCAGGAACCCAATACCAACCTGTCCAGCTACGAGTTCCCCACGGATGAATGCGACCTCTACGACGTCAGGGTGAGTTTCAGCCAGCTCAAACTGGACCACTGGATCATAGCACCCCACAAGTACAACCCCAGGTACTGCAAGGGGGTCTGCCCCAGGGCAGTGGGCTACATCTACGGCTCGCCCGTGCACACCATGGTGCAGAACATTATCTATGAAAAGCTGGACTCCTCCATCCCCAGACCTTCATGCGTTCCTTCAGAATACGACCCCTTGAGTGTTTTGACCATTGAGAACGATGGATCCATTGCCTACAAGGAATATGAGGAGATGATTGCTACTAAATGTACCTGCCGGTAAGGCTCAAATCTATCTGTAACAAGAGGTTTCGTAAAAAGAAAACGTTTGCACTTACCGTACAAATTTCAGGCGAGACGCTGAGATTGTTTTCTCACTGTTTCATTCACCATAGCCATTTAATCCATCCCgacagtgttagttgaatgacCTCGGTaatattttctcatttctctcaaAAAGTCACGTTTGTGTGTATAAAAAAGTTGAGCAGGTGACTAGATGAGAAAAAAGCTTTATGTTTAACGCGTATGAATACGATttaagttaattatttaatttatgttcttGGTGGTTGTGTCTCAGTTCTCCGCATGCTTGAACACAAATGGCAGAAGTTTTAAACAAATCTAGTTCTGGACCGATTATGAAAAGTGTAGTCCTGTTCTTCTTAATGGAACACTTTTACAGTCGTTTTTAATACCTGTGGATTGCAGCGGTTGTCGGAAGGGCAACCTCTCTCTTCATGATGTCCAGAAAGTAAGTTGCCCTAAACTAAGGACAACTTGATGAGCGAATGAAATGCTCGAAGGCATTTGATCATTGTGTGCCAAACGGTTTATAGCAGAATACatttaatgtgtgtatttatgtcaTTTGTCTGTGTGCCTTGTTCTGGTTGGCTCTGATTTCACACCAAAATATGATCTTTTGATagattcataaaaaaatgtgaaataaaaaaaaacaaagcaa

Function

GO: NA

KEGG:

id description
K22673 GDF9; growth differentiation factor 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253644.3 True 2142 mRNA 0.53 3 5491422 5494564

Neighbor

gene id symbol gene type direction distance location
LOC103038898 NA coding upstream 6258 5480388 ~ 5485164 (+)
atp7a atp7a,LOC101485317 coding upstream 14991 5430689 ~ 5476431 (+)
atp10b NA coding upstream 83407 5339650 ~ 5408015 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding upstream 177764 5182503 ~ 5313658 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding upstream 318166 5143765 ~ 5173256 (+)
LOC103037091 NA coding downstream 202355 5696919 ~ 5731315 (+)
tmem173 NA coding downstream 467716 5962280 ~ 5987766 (+)
LOC103031741 NA coding downstream 513997 6008561 ~ 6011401 (+)
trnaa-agc_14 NA coding downstream 542238 6036802 ~ 6036874 (+)
trnaa-agc_15 NA coding downstream 543112 6037676 ~ 6037748 (+)
G71411 NA non-coding upstream 81109 5409031 ~ 5410313 (+)
G71397 NA non-coding upstream 166535 5323669 ~ 5324887 (+)
G71304 NA non-coding upstream 193101 5295678 ~ 5298321 (+)
G71294 NA non-coding upstream 284345 5205216 ~ 5207077 (+)
G71287 nudcd2 non-coding upstream 353855 5133735 ~ 5137567 (+)
G71473 NA non-coding downstream 33432 5527996 ~ 5532969 (+)
G71474 NA non-coding downstream 33891 5528455 ~ 5532295 (+)
G71489 NA non-coding downstream 108556 5603120 ~ 5603321 (+)
G71490 NA non-coding downstream 113154 5607718 ~ 5607946 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding downstream 305839 5800403 ~ 5859364 (+)
G71247 NA other upstream 511411 4956298 ~ 4980011 (+)
G71249 NA other upstream 523515 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 569602 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 1049491 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1916664 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 5344 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 178154 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 376526 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1031077 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1387023 6881587 ~ 6885541 (+)

Expression


Co-expression Network