LOC103047122 (LOC108439803)


Basic Information

Item Value
gene id LOC103047122
gene name LOC108439803
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3058524 ~ 3081939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257735.3
CGCTCAGCAGCGCGCGGACTCGCCTGTTTTGAACGGCTGGAGTCGCTGGGAGGTCGCGCGCGCGGtgaagctggagctggagcgcGAGCAGCTGCGCGTGGAGCAGGTGAACCAGGTGCGGTAACGGCGCGCGGGGGAACAGAAGAGGACAACagaccaacaaacaaacaaacaaagacataaacagaaaaaaagataaaaataaacaggtAAACAGACAGGTAAAGAATGTTGGAGCGGTGTGGAGCAGCGAGGGATTCAGAGGAGACCGGAGACCGCGGGGGCTGAGAGCTCAGAGATCAGGGCAGGACAGATGTGTATGGAGGTCACTGATTGGCGGGGGGTGTACTGGTGGGTTGTTCTCCTGTGGTTAGTGGGAGTGGCAGCAGCAGGAGACCCACCTTGGCCCTGCCCTCAGCGCTGTGAGTGTTTACACGAGTTCCTCCTGGTCAACTGCTCTTCACGGCACCTGACCACTGTACCCGACGGCATTCACAGCAATGCCCAGCGCCTCAACCTCTCCACTAATCGCCTGAAGATGCTCGGGAGGCGGCAGTTCGCCGGTCTGAGTCAGCTGCGAGAGCTGGACCTGAGTGAGAACATGCTGACAATGATCGAGGTGGAGGCCTTCCTCGGGCTGCAGAACCTGCTGACGCTTCGATTGAATCGAAACCAGCTCAAGATCATCCCGGTCGGGGCCTTCTCAGGACTTTCCAATCTCCGCCTGCTGGACGTCAGAGAGAACGAGCTGCTGGTCTTCCTGGACTTCACGTTTCGAGAGATGGCCTCTCTGCAGAAGCTGGAGGCCAGCGAGAACGACCTGGTGTTCATCTCCAACCGCGCCTTCAACGGCCTCATCAATCTGCAGGAGCTCAATCTGGACAGGTGTAACCTCACGTCCATCCCAAGCGAGGCGCTGTCGCAGCTCACTGCACTGTCACGACTCAGGTTCTGCCGGGTCAGCTTCACAACCCTTCCCAACAACTCCTTCCGGAGGTTAAATCGTCTCAGAGAACTGACCGTGTCCCACTCACCTGGTCTGGACTCGATCGCCGCCAACAGCCTGATTGGCCTCAACCTCACTTCCCTAACTCTCAGCTACTGCAACCTGAGCTCGGTGCCCTACTCCCCTCTGCACCACCTGGTCTACCTGCGCTACCTGGACCTGTCCTACAACCCAATCACCACCATCCAGTCAAATCTGCTGGGGGACCTTCTGCGTCTGCAGGAGTTCCACCTGGTGGGCGGGAGTCTGCTGAAGGTGGAGCCTGGAGCTTTCCGCGGCCTCATCCACTTCCGCCTGCTCAACGTTTCCTACAATCGACTTTCGACCCTGGAGGACACTGTGTTCCATTCGGTGGGGACCCTGGAGGTTCTCAGACTCGACGGGAACCCGTTGGCTTGTGACTGCCGGATGCTGTGGGTGCTGCGGCGTCGCCTGCGCATGGACTTTGACGGGCGGCCGCCCAGTTGCACATCGCCTGTTCAGGTGCAGGGCAGGAAATTCCAGGACTTCACTGAAGCCGAGCTGCCTGGTTTGTTCACCTGCAGGCAGGCGCGCATTCTGAACCGAAAACCCCAGGAGGTGCGCACCGACGAGGGTCATACGGTTCTGTTCTTCTGCCAAGTGGATGGGGACCCTATTCCCTCGGTCATCTGGGTGAGCCCCCAGCGCACCCTCATCTCCACCACTGGACGCATCCGTGTCCTTCCCAATGGTACCCTCGAGGTGCGTTACGCTCAAGTCCAGGACAGTGGCTACTACCGCTGCTTCGCCTCCAATGCAGCAGGAAACGACAGCATCTCCGTCAACTTAAGGGTACGAGGCTTTCCTGCTTCGTCACGGAATCGCTCCGCCCACTTCTTCTTGGAGGGGTGGAGCCTTTCTTCCACCCAGACGCCTGTCAACGGTTCCCAGGGTCCTCAGCCGTTTCCTTTTGACGTGAAGACACTGGTGATCGCTGTCACAATGGGATTTCTGTCGTTCCTGAGCTCGGTGGCCATTTGCTTCGTGTTCATGTTCTTCTGGAGCCAGAGCAAAGGCCAGATCAAGCACACTGCCACCATTGACTTTGTCCCTCGCAGTGCGGGGGCATCAGCGAATGGAGGTGGCGGTGGCATGGAGACTGGCAGGTTCACCATGAAACTCATCTAA
>XM_022671960.1
CTCAGCAGCGCGCGGACTCGCCTGTTTTGAACGGCTGGAGTCGCTGGGAGGTCGCGCGCGCGGtgaagctggagctggagcgcGAGCAGCTGCGCGTGGAGCAGGTGAACCAGGTGCGGTAACGGCGCGCGGGGGAACAGAAGAGGACAACagaccaacaaacaaacaaacaaagacataaacagaaaaaaagataaaaataaacaggtAAACAGACAGGTAAAGAATGTTGGAGCGGTGTGGAGCAGCGAGGGATTCAGAGGAGACCGGAGACCGCGGGGGCTGAGAGCTCAGAGATCAGGGTGAAGGCCTGTAGGAGTTTGTCTGAAAGCTGCTGGGTATGTGAAGCCGCAGCAGCTTGGCCTGTAGGCAGGACAGATGTGTATGGAGGTCACTGATTGGCGGGGGGTGTACTGGTGGGTTGTTCTCCTGTGGTTAGTGGGAGTGGCAGCAGCAGGAGACCCACCTTGGCCCTGCCCTCAGCGCTGTGAGTGTTTACACGAGTTCCTCCTGGTCAACTGCTCTTCACGGCACCTGACCACTGTACCCGACGGCATTCACAGCAATGCCCAGCGCCTCAACCTCTCCACTAATCGCCTGAAGATGCTCGGGAGGCGGCAGTTCGCCGGTCTGAGTCAGCTGCGAGAGCTGGACCTGAGTGAGAACATGCTGACAATGATCGAGGTGGAGGCCTTCCTCGGGCTGCAGAACCTGCTGACGCTTCGATTGAATCGAAACCAGCTCAAGATCATCCCGGTCGGGGCCTTCTCAGGACTTTCCAATCTCCGCCTGCTGGACGTCAGAGAGAACGAGCTGCTGGTCTTCCTGGACTTCACGTTTCGAGAGATGGCCTCTCTGCAGAAGCTGGAGGCCAGCGAGAACGACCTGGTGTTCATCTCCAACCGCGCCTTCAACGGCCTCATCAATCTGCAGGAGCTCAATCTGGACAGGTGTAACCTCACGTCCATCCCAAGCGAGGCGCTGTCGCAGCTCACTGCACTGTCACGACTCAGGTTCTGCCGGGTCAGCTTCACAACCCTTCCCAACAACTCCTTCCGGAGGTTAAATCGTCTCAGAGAACTGACCGTGTCCCACTCACCTGGTCTGGACTCGATCGCCGCCAACAGCCTGATTGGCCTCAACCTCACTTCCCTAACTCTCAGCTACTGCAACCTGAGCTCGGTGCCCTACTCCCCTCTGCACCACCTGGTCTACCTGCGCTACCTGGACCTGTCCTACAACCCAATCACCACCATCCAGTCAAATCTGCTGGGGGACCTTCTGCGTCTGCAGGAGTTCCACCTGGTGGGCGGGAGTCTGCTGAAGGTGGAGCCTGGAGCTTTCCGCGGCCTCATCCACTTCCGCCTGCTCAACGTTTCCTACAATCGACTTTCGACCCTGGAGGACACTGTGTTCCATTCGGTGGGGACCCTGGAGGTTCTCAGACTCGACGGGAACCCGTTGGCTTGTGACTGCCGGATGCTGTGGGTGCTGCGGCGTCGCCTGCGCATGGACTTTGACGGGCGGCCGCCCAGTTGCACATCGCCTGTTCAGGTGCAGGGCAGGAAATTCCAGGACTTCACTGAAGCCGAGCTGCCTGGTTTGTTCACCTGCAGGCAGGCGCGCATTCTGAACCGAAAACCCCAGGAGGTGCGCACCGACGAGGGTCATACGGTTCTGTTCTTCTGCCAAGTGGATGGGGACCCTATTCCCTCGGTCATCTGGGTGAGCCCCCAGCGCACCCTCATCTCCACCACTGGACGCATCCGTGTCCTTCCCAATGGTACCCTCGAGGTGCGTTACGCTCAAGTCCAGGACAGTGGCTACTACCGCTGCTTCGCCTCCAATGCAGCAGGAAACGACAGCATCTCCGTCAACTTAAGGGTACGAGGCTTTCCTGCTTCGTCACGGAATCGCTCCGCCCACTTCTTCTTGGAGGGGTGGAGCCTTTCTTCCACCCAGACGCCTGTCAACGGTTCCCAGGGTCCTCAGCCGTTTCCTTTTGACGTGAAGACACTGGTGATCGCTGTCACAATGGGATTTCTGTCGTTCCTGAGCTCGGTGGCCATTTGCTTCGTGTTCATGTTCTTCTGGAGCCAGAGCAAAGGCCAGATCAAGCACACTGCCACCATTGACTTTGTCCCTCGCAGTGCGGGGGCATCAGCGAATGGAGGTGGCGGTGGCATGGAGACTGGCAGGTTCACCATGAAACTCATCTAAATAAACGCATCAAGCGTTGGTGGATTGATGGACTCTTCAGGTTCGGTTTCAATGGGGCCTTCAACGACCTTCCAATGTGTCTGGTCTTTGAGGGACCAGTAGAAGCTGTGAAAGAGTTTCTGGACCATGAACCTTGTATAAAACAGAATGAGAGAGCAGAGAGTGGGATAACCAAATAGGATGGAACTTGaacaaatgataaataaactttttctcAAGTGCTGCTTGCTACTACAATGCATGAAGCTAATGGAAGGTGCATGAAGCTTTAGACTTTGACTGAAGTCATGAACATTTGATGAACAATCAGGAACGAGGCATGACCAAGCTTTGGTAAAAGTGCAGGAAGAACACTTTAAAGCTTAGATGAGATGAAGCAGAAAGGTGGAATTATTGTACAGGGAACTTACAGGTTAGAAACTGAAGAAGCTCTGATGGACTGCATGGAAGCATGCAGCATGCATACTGAATGCTGGGTGCTTAATTTAAAGACTTTAAAGCATCAAAAAGAAGcccaagctgtttttttttcttactttgttAATGTACACATGTTGAGAAGTACGCATGTTtggaatttttacaccagaatTTACTGAATTTACACCAAAATACGGTAAGGAAGCACTACCTTGAAAGGGTAGTTTCCAGGAATTTTCAAGTTAAGTTGTACACAGAGTCATTCAGAGGGGTTCAGTGTGGTAATATTTGCTGTGAAGGGGGATGTTGGTATTGGAGTACAACTGCCACACAGATTTTAGGGTTTGCGCTAATTCTAAGTAATTCCAAGTAGTTATtgattcaagtaattaactgtACATCCCTTGTTGAGACATGGAAGAAAATCACATAATCATTTGAGGTTTTAGGTGGTCAAGCTATTGGAAAAGCTCTTGATCAACATAATGTATGTTGGATTAGATTTTGATCATGTGAGTTTTggtcatttgtagctccgccccctcgttacctgtctccaggtgtttcctgtccccttctgtgtgtataaatagttcCCTTTGTTCCAGTCTCACTGGTCCGTGGTTCTGTCAGGTTGGGGCAAGgaggagacgtggaggcggaTGCAAATGCATGTAGATTTATTGAattatacacaaataaaaaaacaaggaactaaatgcacaaagaaacaaacaactgaaacaatacaaaacatgaGACACAGAGTATATTGACATAAAAATGCCTAACCAGTGAGACTTGACCAAAGGgaactatttatacacacagaaggggacaggaaacaggaaacacatgaggacaggtaacgagggggcggagctacaaatgaacagctAAGCACACAGACAGGAGCACGTAGAGGAGCACGGGACTGTGGCAGAACTTAAAGTTAATACAGAAATAGCACATTAGACACAAAGACAGAGAGGGAACAGGCCAAGAACGTGACAGCAGGCGACAAACCACTTTTTTGGTTATTACACATGTTCTTTTCTATCACAAAATGTCACCAAatatctaatttatttattttttgttgctattgtgtaaaacagtgttttttttttcatttgttgctTCAGTGCAACATTATGTAGCTAGACCACATTTTAGGGGAATAATGCTAATGCAGTGGTGGTTATTATTTTCCTTCCAGAAAAAAGCAAATCCATGCTATAGAGGGTTAAACTCAAATTCAAACACAAAAATCTGACTGACCTGCTATACCAGCTTGAGATGCTGCTTTTTTCAGCTGGAAAACTCTTAACAATCTTCAATTTGGGTTAAAAGTTtagtttaaatactgtatatacaggatAGAAAAGTATATCTAGAATATGTAAAGCAAATTGGTTCCAAAATAGAGTCTATTTAAacatgataattacatttaaaacccAGGTGCTACTCTAAATGGCTATAGGTTTCTCAATTTCTCTACAATGAATCGTTTCACATCAAATCCTCTCTCTGAATGACTTTGTGTACATTTCACTAATTaattcacacaaataaaaagGTGGGATTTGTCATCAACCATAAACATGCAGATCAAtgtagatgctttatttttaagacttttatttgtagaaaataaaagctaTCACCTGTTTAACACTCTGCA

Function

NR:

description
PREDICTED: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257735.3 False 2155 mRNA 0.58 3 3058524 3079832
XM_022671960.1 True 4327 mRNA 0.48 4 3058526 3081939

Neighbor

gene id symbol gene type direction distance location
LOC103025421 n4bp3 coding upstream 111795 2871576 ~ 2946729 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding upstream 192308 2857895 ~ 2866216 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding upstream 204420 2828409 ~ 2854104 (+)
gpx3 LOC108415088 coding upstream 357390 2690738 ~ 2701134 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding upstream 2085681 957420 ~ 972843 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding downstream 13945 3095884 ~ 3113634 (+)
ndufb9 ndufb9 coding downstream 265829 3347768 ~ 3353595 (+)
LOC103043978 NA coding downstream 338301 3420240 ~ 3439155 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding downstream 842033 3923972 ~ 3935104 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding downstream 873069 3955008 ~ 4105963 (+)
G70779 NA non-coding upstream 1560 3046392 ~ 3056964 (+)
G70742 rmnd5b,LOC106612137,LOC105026275,LOC107653309 non-coding upstream 96414 2958702 ~ 2962110 (+)
G70740 NA non-coding upstream 102342 2954496 ~ 2956182 (+)
G70739 NA non-coding upstream 108619 2947454 ~ 2949905 (+)
G70716 NA non-coding upstream 111424 2946839 ~ 2947100 (+)
G70819 NA non-coding downstream 192656 3274595 ~ 3276522 (+)
G70820 NA non-coding downstream 211520 3293459 ~ 3322968 (+)
G70821 NA non-coding downstream 223594 3305533 ~ 3306021 (+)
G70848 NA non-coding downstream 317404 3399343 ~ 3458582 (+)
G70859 NA non-coding downstream 378016 3459955 ~ 3460502 (+)
G70604 LOC108436838 other upstream 699295 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 864965 2088920 ~ 2193559 (+)
G70522 NA other upstream 1789120 1268767 ~ 1269404 (+)
G70385 NA other upstream 2052686 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 2203366 845025 ~ 855158 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 39979 3121918 ~ 3292475 (+)
G70846 NA other downstream 295745 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 327731 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 1275126 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 1833874 4915813 ~ 4921820 (+)

Expression


Co-expression Network