rmnd5b (rmnd5b,LOC105026275,LOC100306854,LOC106612137)


Basic Information

Item Value
gene id rmnd5b
gene name rmnd5b,LOC105026275,LOC100306854,LOC106612137
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2958649 ~ 2982646 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257737.3
aaaagagagagagagagagagagagagagagagagagagaggtagtcCCGCAGTACAGTGATGGAGCAGTGTGCGTGTGTGGAGCGAGAGTTGGAGAAAGTGCTGCACAGGTTTGTGACGTATGGGCATCAGTCCGAGGAGCGCCTGGACGAGCTGCTGAGGAACGTGTGTGAGCTGCGCAGCCAGCTGGTCACCTTCGgtgtaCAGGATGCAGATCTGTCCGTGCTCTCTCAGACGATGGcgcagtgctgtaaagaaattaaagaaactgtGCAGATGCTCGCCTCTCGCCACAAGGACATCCACGGCAGCGTGTCCAAAGTTGGCAAAGCTATCGACCGGAACTTTGATGCGGAGGTGAGTGCGGTGGTGGCTGAGACTGTGTGGGACTCACCTGAGAAGCAGAGGAACCTCAGTGAGACCATCGTTGAGCACCTGTACCGGCAGGGCATGCTGAGTGTGGCTGAAGATCTGTGTCAGGAATCCGGGGTGGTTATCGACATGAGCATGAAGCAGCCGTTCCTGGAGCTCAACCGTATTCTGGAAGCTTTAAGAATGCAGGACCTCAGGCCAGCACTGGAGTGGGCTGTGACAAATCGACAGAGGCTGCTGGATCTGAACAGCAGTCTGGAGTTCAAGCTGCACAGGCTTTACTTCATCAGTCTGCTAAACGGGGGCGTAGACAACCAGCTGGAGGCGCTGCACTACGCCCGTCACTTTCAGCCATTCGCTGCTCAGCATCAGAGAGATATTCAGGTGCTAATGGGAAGCTTGGTTTACCTTCGTAACGGCATTGAAAACTCGCCCTACCGCAGCCTGCTGGAGACCAATCAGTGGGCAGAAATCTGCAACATCTTCACCCGGGACGCCTGCGCTCTTCTTGGCCTGTCTGTAGAGTCTCCCCTCAGTGTCAGTTTTGCATCAGGATGCATGGCGCTACCTGTGCTGATGAACATTAAGCAGGTGATCGAGCAGAGGCAGTGCAGTGGTGTCTGGACACACAAAGATGAGCTGCCGATTGAGATAGACCTGGGGAAGAAGTGCTGGTATCACTCAGTGTTTGCGTGTCCCATCCTGAGGCAGCAGACGTCAGAGAGTAACCCACCCATGAAGCTCATCTGTGGGCACGTCATCTCCAGAGATGCCCTCAACAAACTCACCAACGCTGGAAAGCTGAAGTGCCCGTACTGCCCAATGGAGCAGAACCCGTCGGACGCTAAGCAGATCTACTTCTGACTTGGGAGGAGAGCGGATTAAAGCGGCGGAGGCTCTGAGGTGTCGGAGGCTCGCTGGAGTGGACTGAACTGGCTGAGTTGGAATGATCCACGTTCATGGGCACGGCGAGGCCCCGCGTGGCGGCTCGAACCGTGGAGCCGCTTCCTCCCTTCCCCCCCTCCCAAGCTTTTAGTTGGCAGAGGCCGGTGGTCATGACTACATCACACACCTGTAGATCCGAGTCAGTAAGTGATAAACGTCACACGGACAGATATCGGCGGATCATTTGTTCATACGCACTCATTCACGACAGACTCACAGGcttttataagtatatgtgtgtgtgtgctgatttgtttcgttttttttccctccttatTAATTTGACTTTAATTTGAACCCCTTACCCTCGTTTTTTTCCTCCACCTCTTATTGAAGAAGAGTGTGGGCTGTATGCTTGTGAACAGGTGTGTGACCTCTTGCATAGTATGTTGCTTCTTTCCAGATATTTAAACGACTATATATGGGGCGTTCTGCCTGTGTACATGACAGAAGTGGCTTTTTAGCAAGTATATTCACAGAGAGATTCACAGAGAGTATTGAAATAAGGTCATGAGTTGATTGGTGGAGGGCTTGTTGGTGACGTTTTGAGCCTGTGGTGAAAGCAGGACGCTGATTGTAACCGAATAGCGCCGCTCTTCCTGATGGTGTAATGATATAATAAAAGCGTGATTGGACTGgctgatttttaattttaaagtttttttttattattatttttattgtttaatgtgtCTGATTGAAGAATTGTCTGAGGTTTAATTTCCGGAGAGGAAAATCAGAATCGTCTCTCGTTCCTCAAAAGAGTACCAGCTATGTATCTTGCTTTGTGTACATATTTAAgaactatttaaaaagtaaaaaaaaaaaaaaaaa

Function

symbol description
rmnd5b Predicted to enable metal ion binding activity and transferase activity. Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of GID complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human RMND5B (required for meiotic nuclear division 5 homolog B).

NR:

description
PREDICTED: protein RMD5 homolog B isoform X2

GO: NA

KEGG:

id description
K23333 RMND5; E3 ubiquitin-protein transferase RMND5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257737.3 True 2151 mRNA 0.50 10 2958649 2982646

Neighbor

gene id symbol gene type direction distance location
anxa6 anxa6,LOC107750364,LOC107594885 coding downstream 142114 2764145 ~ 2816535 (-)
dctn4 dctn4,LOC107749746 coding downstream 279744 2661511 ~ 2678905 (-)
LOC103022920 NA coding downstream 422668 2500988 ~ 2535981 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding downstream 469653 2435680 ~ 2488996 (-)
LOC103026956 ctnna1 coding downstream 738285 1998156 ~ 2220364 (-)
LOC103047641 c14h5orf24,LOC108439806,LOC107594921,LOC107668575,LOC107749736 coding upstream 40773 3023419 ~ 3027693 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding upstream 315564 3298210 ~ 3317552 (-)
rnf139 rnf139,LOC106569923 coding upstream 341252 3323898 ~ 3335786 (-)
tatdn1 tatdn1 coding upstream 353563 3336209 ~ 3346476 (-)
mtss1 mtss1,LOC106569924 coding upstream 379925 3362571 ~ 3407431 (-)
G70769 NA non-coding downstream 2475 2954612 ~ 2956174 (-)
G70771 NA non-coding downstream 6732 2951573 ~ 2951917 (-)
G70770 NA non-coding downstream 8746 2947441 ~ 2949903 (-)
G70738 NA non-coding downstream 11675 2945157 ~ 2946974 (-)
G70736 n4bp3 non-coding downstream 15042 2943353 ~ 2943607 (-)
G70795 NA non-coding upstream 100330 3082976 ~ 3083205 (-)
G70809 NA non-coding upstream 128159 3110805 ~ 3115995 (-)
G70812 NA non-coding upstream 134238 3116884 ~ 3117089 (-)
G70923 NA non-coding upstream 294830 3277476 ~ 3291961 (-)
G70926 NA non-coding upstream 322873 3305519 ~ 3306018 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other downstream 213577 2704195 ~ 2745072 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 1923633 1009886 ~ 1035016 (-)
G70924 ndufb9 other upstream 297510 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 461449 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 592915 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 753980 3736626 ~ 3848624 (-)
G71175 NA other upstream 1429302 4411948 ~ 4413011 (-)

Expression


Co-expression Network