LOC103021672 (LOC108439811,LOC107749774,LOC107653301,LOC107594902)


Basic Information

Item Value
gene id LOC103021672
gene name LOC108439811,LOC107749774,LOC107653301,LOC107594902
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2857895 ~ 2866216 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257738.3
gtgtggtgtgtgtgtgtgtttgactgaCGCTGCAAAACAGCTGcctttgaacacacacacacaaccggATACAACCAGACCCTCAGACCTGCACTCATTTGTCTTTGGAGCTTCACTTCTTCTCCAGCTCTGGAATGAACTGAAAGGCATTTGTGGAAGTACTGGAATTCGTGTAGGTTGTTTACTGGTTGCAGTGAAGCGTCTCCACCATGAAGCTGGCTGTGGTGCTGTTGGCTCTGCTCTCCTGCATGCTGCTCTTTGAGCTTGGTATGAGCCAGAAGGATGAGCAGAAGGTGAAGCCAGCAGCAGATAAGAAGGCGAAGGTCAAGCCTAAGGTTGAAAAGAAGGCGGCTGAGAAGAAAACCAAGGTCACTACCGTTAAACCTAAACCCAAGACCACCCCTCAGCCCCCGGCAGCTCAGACACACCTGACTCAGGTACTGCAGAGGGGGAGGTTCCAGAAGGTGGGCAACACACTTACTGTTGTGGCAGGAGACACTCTGGAGCTCAGGTGTAAGGGCAGTCCTGTACAGTGGGGCATCCCACCTTACCTGGAAGAGGATGACGAAGGACGACTCAGGACTGTCCAGCATGATCGATATGGTACGCTGATTTTAGCGAACACAACCGGCGCTGACACCGGAGAGTACACCTGCTTCCCCATGTACTGTGAGGACGTGGAGTGCAGGAAGGAGTACAATAAAGCCGTCAAAGTCTTTGTTTTCTTCGCTGACCCACAGGAACTGTTCGTGCCCTCGGCCAACTACTACGAGATCATCCACCTGCGGAGCAACAGGCCCACGGTGCTGCCCTGCCAGATCACGTCTCCGCAGGCTAAAGTCACCCTGCACCGGGAGTACCCTCCCACAGAGGTGAAGGTGGACGGAGCGGAGATTTCCTACGAGGTCACACGAGGGTTCACCATCCACAGACCCAAGCAGTACCACGCCGGATCCCTGTACTGCGTGGCCAGCCTGGGCAACCTGCGGCAGAGCTCCACCAAATACATGCTGATCTACGTCAACTATCCTGCTGCCCCGCCCGCCCCCTTCATTCAGGCCTCGTCTGACCCTGTGACTGTGGGGCAGAACCTGCAGGTTACCTGTACAGTGGTGGGAGACCAGGACGTACTGGTGGAGTTCACCTGGGATTACCCTGGACAAACAATCGGTCGTCCGCTCTACACTCAGGACAGTATGCAGACAGTGCAGGTGGATGGGCAGAGCCGGCAGCGTTCCCAGAGCGTCCTGCTGGTGGACGAGGTCAGAGAGGTGGACCAGGGCACCTACACCTGCACCGCCCAGAATCTGGAGGGGTCACGCTCAGCCTCCACTACTGTTAAAGTAGTGCCAGCTCGCAGCGCCAACAAACCAAAGAAACCGtgagagggagacagacagTGGACTGTACCATGGACCAAATAACCAATCAGCTTTTGTAGCTACAGTGTGTGGTTCCTTAAAGTGACAAATCAAGAGTTTACTAAACATTTTCCCATTGTAGTCAAGCTTTTAGATACCTAAGAGTGTGCTTAAAGGTCTGCAGACACCTACTAACCCAGTGCCTATTGAAATGGTGCAATAACAGCCTCTACACTTCTACAAAGCATTAAgggccaatcccatttcacccattGGTCCTACAACTTACCCCTACCCATTctttttcgagtgtaacccttccccttggaacagagttattTTCTGGCTTCCTGATGGATAACTCTATTGCTTCATGACTcctgaagtttcatattttgccggctgctgGAATGACGAACCTGGCTGGCAGGCTACTGTCAGTAACTAGTGGGAGGGGCTCCACTGATTCTGATACCAGTGTTTGGTTCTTTCCTGCACTCACCGTCACATAATTTAAATGGGGTGCTTACACAGTTTGTCAttgcattcaattcataaccagtcattGTCTGGTGGCCCCAGTCCAGCTACGGCCCCAGGCAATGGATTAGTTAGCTTGCCCTGTTGCAACGGGTTTGGTAAGAGCACTGGTCTCATTTGGAGCATTGTGGCTCACACCAAAGAAAAGCATTATAGTCTTCATAATAAGGGTCTCTAATAACTGcatagttaca

Function

NR:

description
PREDICTED: platelet-derived growth factor receptor-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257738.3 True 2095 mRNA 0.52 6 2857895 2866216

Neighbor

gene id symbol gene type direction distance location
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding upstream 3791 2828409 ~ 2854104 (+)
gpx3 LOC108415088 coding upstream 156761 2690738 ~ 2701134 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding upstream 1885052 957420 ~ 972843 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding upstream 1945373 899894 ~ 912522 (+)
LOC103042240 LOC103042240 coding upstream 1980491 867909 ~ 877404 (+)
LOC103025421 n4bp3 coding downstream 5360 2871576 ~ 2946729 (+)
LOC103047122 LOC108439803 coding downstream 192308 3058524 ~ 3081939 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding downstream 229668 3095884 ~ 3113634 (+)
ndufb9 ndufb9 coding downstream 481552 3347768 ~ 3353595 (+)
LOC103043978 NA coding downstream 554024 3420240 ~ 3439155 (+)
G70697 NA non-coding upstream 7521 2849959 ~ 2850374 (+)
G70678 NA non-coding upstream 77492 2764038 ~ 2780403 (+)
G70680 NA non-coding upstream 82324 2772613 ~ 2775571 (+)
G70676 NA non-coding upstream 94256 2763344 ~ 2763639 (+)
G70660 NA non-coding upstream 100061 2757143 ~ 2757834 (+)
G70706 NA non-coding downstream 1220 2867436 ~ 2867850 (+)
G70715 NA non-coding downstream 2150 2868366 ~ 2868566 (+)
G70720 NA non-coding downstream 12233 2878449 ~ 2878654 (+)
G70722 NA non-coding downstream 18281 2884497 ~ 2884756 (+)
G70717 NA non-coding downstream 18937 2885153 ~ 2885559 (+)
G70604 LOC108436838 other upstream 498666 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 664336 2088920 ~ 2193559 (+)
G70522 NA other upstream 1588491 1268767 ~ 1269404 (+)
G70385 NA other upstream 1852057 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 2002737 845025 ~ 855158 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 255702 3121918 ~ 3292475 (+)
G70846 NA other downstream 511468 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 543454 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 1490849 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 2049597 4915813 ~ 4921820 (+)

Expression


Co-expression Network