dctn4 (dctn4,LOC107749746)


Basic Information

Item Value
gene id dctn4
gene name dctn4,LOC107749746
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2661511 ~ 2678905 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257739.3
CGTAATCTGTGCGCGAGGAGAGGGCGTGGCTTCAGAGATGGCGTCCCTCCTGCAGCCGGACAGGGTGCTGTATCTGGTCCGTGGAGAGAAGAAGATCCGCGCCCCGCTTTCACAGCTGTATTTCTGCCGCTACTGCAGCGAGCTGCGCTCCCTGGAGTGCGTCTCTCATGAAGTCGATTCCCATTACTGCCCCAGCTGTCTGGAGAACATGCCTTCAGCTGAGGCCAAGCTTAAAAAGAACAGGTGTGCCAACTGCTTTGACTGCCCATGCTGCATGCACACCCTGTCCACACGAGCCACCAACATCCCTGCCCCTTTACCAGACGACCCGACCAAAACCGCCATGAAGAAGGCCTATTACCTGGCCTGCGGGTTCTGCCGCTGGACCTCGCGGGATGTAGGCATGGCTGACAAGTCTGTGGCCAGTGGAGGATGGCAGGAACCAGAGAATCCTCACACTCAGAGGATCAATAAACTGATTGAGTATTATCAGCAACTGGCCCAGAGAGAGAAGctggagagagacaggaagaaaCTGGCCAGAAGACGCCCTTTCATGCCTCAGGCTTTCTCGCAACACACTATTCACGTGGTGGAGAAGTATGGTCTGGGCACTCGTCTGCAGAGACAGAGACCTGGAGCTCCAGTCAGCGCTCTCTATGGCCTCTCTCTGAAGGAGGGAGAGGAGCAGAAGGAGGTCAGTATTGAACCTGCTCAGGCTCTGGACGAGGTGGAGCCTCTGCCTGAAGACTGCTACACACGGCCCATCAACCTGCCGGAAGTGACCACTCTTCGCCAGAGGCTGCTACAGCCAGATTTCCAGCCTGCAGGAGCCTCTCAGCTGCATCCCAAACACAAGCATCTGCTGATGAAACGCTCACTGCGCTGCAGGAAATGTGAGCACAATCTGAGCAAACCTGAGTTCAACCCGACCTCAATCAAGTTCAAAATCCAGCTGGTGGCTGTGAGCTACATCCCTGAAGTGAGAATCATGTCCATTCCAAACCTGCGTCACATGAAGgAGTCTCAGGTGCTGCTGACTCTCACTAACCCGGTGGAGAGCATCACACATGTCAGCCTGTTCACCTGTGAGGAGGGGGATCCTGACGACATCAACAGCACAGCCAAGgtgatgGTACCAGCGAAGGAGCTGGTTTTAGCCGGGAAGGATGCAGCAGCTGAATATGACGAACTAGCTGAACCACAAGACTTTCAGGATGACCCAGATGTGGTGGCTTTCAGGAAGTCCAACAAGATTGGCTTCTTTATTAAAGTGATCCCACAGCAGGAGGAGGGGGACGTCACCGTGGCCTTTAAAATACGGCACGACTTCCGCAACCTGGCCGCCCCCATCCGGCCCAGCGAGGACGGGGAGATGCCCAGCGAGGTCATCTGGCTCGTGCACCATGTGGAGCTCAGCCTGGGGCCACTGATagcctaaaaacacacacacacacacacacacttacgtaCATATTtagacagacacacatttttacacacaggTCAGAGCTTGAGACCACTGGTAGTATGAACTGATATGCACTTAGTAACACCATATAGAGCTCAACCCTGGGTCACTGGTAGCCTGAAGCTTTACAGAACtatgacacacactcacagacacacacattataGAGCTCAGCCTGGGGCATCTACTAACCTACAACATGAGTTCACAtcatgaaagggttaaaatgagcttttttttctccattaagTCGTTTATCTTCTGCAGTAATCCTGTTAATCTGTTGCAATGTTTCACTACAAACACTACCTACACAGTACACAGATCAGGCTTACGGATGTTTCTTCACTGATAAAATACTTACCTGCATGCTTTCCATAGCTTTTTCTCGTTTCCTTACTAACTAAAGTGTGTCCCAGGCTGGATGAGCGCCACCTACATGCACCACCTTGTACAGAACCGTAACTCTACAGCGAGTGCCGACCAACACCTATAGATTCTCCTCTTTACTGTCTTCTTTACACGCTAATCTCTCGCCTCACTGGCCTCGCTCTGTCGGACGTACCGTGCGCTTTTTCGTTGCTTTAGCGTGGAGAACACTCTGCAGATTACTAACTACGTCGCACAAACTCAATGGTTGTAAAAATGGTGAAACTATTCATTCTTATGTGTTAAAgattatagaaaataaaatatcagtGCTTTAATTCTCTGCTACAATCAGAAGACTGGAACACTCTAGACTCCAGACGTCTTTCTGCCGctgatgtttctgtgtgtgagaATCAGATCTGTAGTGAGAGAGTCTGGAATTGTGGtgcactaataaaaaaacaaaccaagagATTCCAA
>XM_007257740.3
CGTAATCTGTGCGCGAGGAGAGGGCGTGGCTTCAGAGATGGCGTCCCTCCTGCAGCCGGACAGGGTGCTGTATCTGGTCCGTGGAGAGAAGAAGATCCGCGCCCCGCTTTCACAGCTGTATTTCTGCCGCTACTGCAGCGAGCTGCGCTCCCTGGAGTGCGTCTCTCATGAAGTCGATTCCCATTACTGCCCCAGCTGTCTGGAGAACATGCCTTCAGCTGAGGCCAAGCTTAAAAAGAACAGGTGTGCCAACTGCTTTGACTGCCCATGCTGCATGCACACCCTGTCCACACGAGCCACCAACATCCCTGCCCCTTTACCAGACGACCCGACCAAAACCGCCATGAAGAAGGCCTATTACCTGGCCTGCGGGTTCTGCCGCTGGACCTCGCGGGATGTAGGCATGGCTGACAAGTCTGTGGCCAGTGGAGGATGGCAGGAACCAGAGAATCCTCACACTCAGAGGATCAATAAACTGATTGAGTATTATCAGCAACTGGCCCAGAGAGAGAAGctggagagagacaggaagaaaCTGGCCAGAAGACGCCCTTTCATGCCTCAGGCTTTCTCGGAGAAGTATGGTCTGGGCACTCGTCTGCAGAGACAGAGACCTGGAGCTCCAGTCAGCGCTCTCTATGGCCTCTCTCTGAAGGAGGGAGAGGAGCAGAAGGAGGTCAGTATTGAACCTGCTCAGGCTCTGGACGAGGTGGAGCCTCTGCCTGAAGACTGCTACACACGGCCCATCAACCTGCCGGAAGTGACCACTCTTCGCCAGAGGCTGCTACAGCCAGATTTCCAGCCTGCAGGAGCCTCTCAGCTGCATCCCAAACACAAGCATCTGCTGATGAAACGCTCACTGCGCTGCAGGAAATGTGAGCACAATCTGAGCAAACCTGAGTTCAACCCGACCTCAATCAAGTTCAAAATCCAGCTGGTGGCTGTGAGCTACATCCCTGAAGTGAGAATCATGTCCATTCCAAACCTGCGTCACATGAAGgAGTCTCAGGTGCTGCTGACTCTCACTAACCCGGTGGAGAGCATCACACATGTCAGCCTGTTCACCTGTGAGGAGGGGGATCCTGACGACATCAACAGCACAGCCAAGgtgatgGTACCAGCGAAGGAGCTGGTTTTAGCCGGGAAGGATGCAGCAGCTGAATATGACGAACTAGCTGAACCACAAGACTTTCAGGATGACCCAGATGTGGTGGCTTTCAGGAAGTCCAACAAGATTGGCTTCTTTATTAAAGTGATCCCACAGCAGGAGGAGGGGGACGTCACCGTGGCCTTTAAAATACGGCACGACTTCCGCAACCTGGCCGCCCCCATCCGGCCCAGCGAGGACGGGGAGATGCCCAGCGAGGTCATCTGGCTCGTGCACCATGTGGAGCTCAGCCTGGGGCCACTGATagcctaaaaacacacacacacacacacacacttacgtaCATATTtagacagacacacatttttacacacaggTCAGAGCTTGAGACCACTGGTAGTATGAACTGATATGCACTTAGTAACACCATATAGAGCTCAACCCTGGGTCACTGGTAGCCTGAAGCTTTACAGAACtatgacacacactcacagacacacacattataGAGCTCAGCCTGGGGCATCTACTAACCTACAACATGAGTTCACAtcatgaaagggttaaaatgagcttttttttctccattaagTCGTTTATCTTCTGCAGTAATCCTGTTAATCTGTTGCAATGTTTCACTACAAACACTACCTACACAGTACACAGATCAGGCTTACGGATGTTTCTTCACTGATAAAATACTTACCTGCATGCTTTCCATAGCTTTTTCTCGTTTCCTTACTAACTAAAGTGTGTCCCAGGCTGGATGAGCGCCACCTACATGCACCACCTTGTACAGAACCGTAACTCTACAGCGAGTGCCGACCAACACCTATAGATTCTCCTCTTTACTGTCTTCTTTACACGCTAATCTCTCGCCTCACTGGCCTCGCTCTGTCGGACGTACCGTGCGCTTTTTCGTTGCTTTAGCGTGGAGAACACTCTGCAGATTACTAACTACGTCGCACAAACTCAATGGTTGTAAAAATGGTGAAACTATTCATTCTTATGTGTTAAAgattatagaaaataaaatatcagtGCTTTAATTCTCTGCTACAATCAGAAGACTGGAACACTCTAGACTCCAGACGTCTTTCTGCCGctgatgtttctgtgtgtgagaATCAGATCTGTAGTGAGAGAGTCTGGAATTGTGGtgcactaataaaaaaacaaaccaagagATTCCAA

Function

symbol description
dctn4 Predicted to be part of dynactin complex. Orthologous to human DCTN4 (dynactin subunit 4).

NR:

description
PREDICTED: dynactin subunit 4 isoform X1

GO:

id name namespace
GO:0005869 dynactin complex cellular_component

KEGG:

id description
K10426 DCTN4; dynactin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257739.3 True 2323 mRNA 0.50 14 2661511 2678905
XM_007257740.3 False 2302 mRNA 0.50 13 2661511 2678905

Neighbor

gene id symbol gene type direction distance location
LOC103022920 NA coding downstream 125530 2500988 ~ 2535981 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding downstream 172515 2435680 ~ 2488996 (-)
LOC103026956 ctnna1 coding downstream 441147 1998156 ~ 2220364 (-)
LOC103041113 ppt2 coding downstream 1655634 988446 ~ 1005877 (-)
rps5 rps5 coding downstream 1678908 975095 ~ 982603 (-)
anxa6 anxa6,LOC107750364,LOC107594885 coding upstream 85240 2764145 ~ 2816535 (-)
rmnd5b rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding upstream 279744 2958649 ~ 2982646 (-)
LOC103025117 NA coding upstream 303142 2982047 ~ 3019753 (-)
LOC103047641 c14h5orf24,LOC108439806,LOC107594921,LOC107668575,LOC107749736 coding upstream 344514 3023419 ~ 3027693 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding upstream 619305 3298210 ~ 3317552 (-)
G70662 NA non-coding downstream 45111 2569887 ~ 2616400 (-)
G70632 NA non-coding downstream 206047 2424036 ~ 2455464 (-)
G70629 NA non-coding downstream 226609 2419559 ~ 2434902 (-)
G70628 NA non-coding downstream 257646 2403411 ~ 2403865 (-)
G70624 NA non-coding downstream 277344 2381317 ~ 2384167 (-)
G70673 NA non-coding upstream 78238 2757143 ~ 2757834 (-)
G70691 NA non-coding upstream 87700 2766605 ~ 2766880 (-)
G70703 NA non-coding upstream 171045 2849950 ~ 2850374 (-)
G70728 NA non-coding upstream 201019 2879924 ~ 2880124 (-)
G70730 NA non-coding upstream 203577 2882482 ~ 2882965 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 1626495 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 25290 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 601251 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 765190 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 896656 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 1057721 3736626 ~ 3848624 (-)

Expression


Co-expression Network