mars2 (mars2)


Basic Information

Item Value
gene id mars2
gene name mars2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7719880 ~ 7725813 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258573.3
CCGGATCCTCCGCTCGGCTCTAAGGAGGAGGAATATCTCTTTAGGAGGAGCGCTGATTGGACCTCAGTGCTCGGTTGAAGGGCAGCTAAAGCGGAAGAGGAGCAGCGGGCCGGTGGCTGTGTGATGTCCGGGTTGGGCGCTGTGTGTTTGGGGGTCAGTGAGCGGCTGCTCCGCGGGGCTCGGTTTAATCTGCCACGGGTTTCTGCGGCTCTGACCTGCAGGAGCCTGAGTGAGGGTCCGGCCCAGCGGAGCGGCGAGCCGGGGGGATATTACGTCACCACCCCGATCTTCTACGTGAACGCGGCCCCTCACCTGGGCCATGTGCACTCTGCAGTACTGGCGGACTGTCTGCACCGACTGCGCGCGCTGCAGGGCCTCCGCTGCAGGTTCTCCACAGGTACAGATGAGCACGGTCTTAAGATCCAGCAGGCAGCGGCTGCGGCAGGGAAAGACCCCCCTGAGCTTTGTACTGAGGTCTCAGACAGGTTTAAGGAGGTGTTCGGAAGCTTTAGCATCTCATACACTGACTATGTGCGGACCACGGAGGAGAGGCACCGGCGGGCAGTGGAGCACTTCTGGAGTGTGCTCCTCAACAACGGCTTCATCTATAAAGGGAGCTATGAAGGCTGGTACTCCACACCAGACGAGAGCTTTCTCACACCAACGCAGGTTACAGACAGCACTGACTCTCTGGGAAGAGAGATTAAAGTCTCCACAGAGAGCGGGCATAAGGTGGAGTGGATGAAGGAGGACAACTACTTGTTCCGCCTCTCTGATTTCCGAACTCAGCTGCAGGACTGGCTGAAGTCCAACCCCAAAGCCATTCAGCCTGAAAAGTTCTACCACATCGTCCTGCAGTGGCTGGAGAACGATCTACCGGATTTATCAGTTTCTCGACAGAGGAGCCGTCTGCAGTGGGGGATTCCGGTTCCTGGGGATCCTGAGCAAACGATCTACGTGTGGTTGGACGCATTGGTAAATTATCTGACTGTTGTTGGCTATCCGGAGGAGCACTCTGATTGGTGGAGTGTTGCGCATCATGTTGTAGGTAAAGACATATTGAAATTCCATGCTGTCTATTGGCCGGCGTTTCTGTTGGCTGCAGGACTGCCCCTTCCTCGGTCGATATACGTGCACTCCCACTGGACAGTGCAGGGAAAGAAGATGTCCAAGAGTGTTGGAAACGTGGTGGATCCATTTGAAAGGTCAAAAAAGTTCACAGTGGATGGCCTGAGATACTTTCTTCTGCGGCAAGGCGTTCCAGACACGGACTGCGATTACGGTGATGACAAAGTGCTGAAATTGTGCAACAGCGAACTGGCTGATTCTCTTGGGGGTCTTCTCAATCGATGCACCGCGCCCTCTCTGAACCCAGAACAGACCTATCCTCAGTTCTGTAATGCTTCTTTCCCAAAAGATTCGAATAAACCCACTGGAAGAGCTGTGTCGGAGGATTACAGAATGATCAAGGCCGTGTCAGAGCTTCCTTCTTTAGTGAAGGAGAACTTTGAGAACCTACACGTGTACAAAGCACTGGAGGCTATTAGCGGCTGCGTTCGCCTGACCAACGGCTTCATCCAGAGACACGCTCCATGGAAGCTTAACTGTGGAGAAACCGAGGACAGACTCTGGCATCAGACAATACTTCACGTGTCCATGGAGTGTCTGCGGATCTACAGCATCCTCCTGCAGCCGGCTGTGCCAGAACTGGCTGATAAGATCCTGTCCAGGTTAGGGGTGAGGTCTGATGAAAGGAGCTGGGATCATGCATGTAATTTTCTGCCAAAGTACGAAGGAAGAGATTGCCCGTATGAGAGAAGACCACTAGGACCAGACACTGGAGTACTATTTAATCGCCTAGAGAGGAATGAGAAACAAGTGGAGACCAGAAAACTTGGGAAACTAAAAAAAGACAAGACCTCATTAAAGACTCAGAACATGTTCTAGTAATTGAGCACTAGAGGGAGACAGActtcagtgttttatatatttttttaagactactgtatgtccaaatgtttttggacagaTAACCCTTGTAACTGCTGCTTTCAGATACTTCATTTTGgtgaaatagatagataataaagtattgccaataaaataggGCACTCTGGAGTAGATGAAAATGATCCTGTGGGCATTGGAAGATAAGTGCTAAGTCCTTCAGTATTGAGCAGTGTAGTGTGTTCTCTGTAAGGCTGAACAATAATTCAGTATCTTCTAATATATTCAATAGCTTTAAACTTATCTTCTAATtgggcacggtggcttagtggctTAGTGTCTGTGCGTGGGTTTACTCAGGAGACTCCGGCTTCCtctcacagtccaaaaacatggagatcaggtaaattggatattctGAATTGCCAATAAAATTGTGTGAATGTGTGGACGGCCATTCctgttgagagtatgctgtgcattATACAGGTATGCCGCTTCTTAcaggtgtgtgttgagtgtgttatTATATAGTAATTAAGGAAGTAAAAATTGCAGAAAAAATGCTGGTTTCAATAatagagaattttttttttttttcaaaacatgtttttgatgttttactatacattatttaaagCATATGTTACTGACTGTCCTGAACTGCTGGGCACACTACATGAATCGTTCAGTTTATAGCTACATACGTCCTGTGTGggctttttttgcttttgtggttctgtggcttttatttttttttatatctgcatTGTGTTGTTTCGACcagaattaataaatatattcattcatAATTGTTGTCCGTATCGTCCAGCTCTAGTTCTCTGGAacaatggagctccatccagtacagTTGGGATGAGCTGCTGATCATCCACCAGCCTGACCTCACTTAAAGGGGACACTAaacccctgatttttgctgactccatcCTCAGCTCAAACTTTAATTTCTGGTTGCTTTGTTTAGTAAGTACATGTATAATCACGGTCAGAATGAAACCTCTCGTATACAAAAATGTGAACTCATGAAACATGAAACGTTTTAGGAATTCTGATCTATTGCAAGTGGTACATTCTCAATGTTAAAAACTGCTGTCATTTCCAAGAACAATGTAGGATTAATTATTATCAATACATATTGTACTAAGAGCCATGAACAATTCTTGGGTATAAAACATCATGAATCTGCAGTGGACTCAATTagtacttttatatattttacacctAACTCTTAAGTTCCTGATAAATGCCTTAAGTCAGTTACTCTCAAACTGTGGTTTCACTTGTAATAAAAGAAGTGTCCCATAGGTGTACACCAGAAGACCTCAGAATATATTTACTCCAGCCACTAAAGCATAATGACAAATACTGCAAGCTGTCAGGTCATTTTCgtaacatttatattatttgtggCTATTGCTTAACCTGTTATGATGCTGTATGGTAAAACCCACACTTTACTCTAACAACCACAGTACTGTAATTATTAACATTAGTCTCACAGGCCCTACAGTAGAACCCTGTGGAGCTCCTCAAGATATACCAAACCAACTTGTTACCAAAAAATCCTGCAGTGTTCCTCTGTCTCAAGCCTTCCAAAATCCCTCATTAGGTGCACTCACTGCattgattaaaaacaataatcaaaTATAACCATCTTACCATGCTATCCTGCAGATGGCAAAAGCAGGCAGGCTCCACACAATTGACAAAAGAGATAAACATGTATGATGTTCTTGTGAAATGGTCTATAAGGTGGTGCTTGGCAGTTTAAGTCTGATCATAGGTAGTATGTGATCTTAAAAGTTTAAGATCTATTGCCTTAAGTGAGTCAtttcaaataattataatttgtgAACTTTTCTGTAATGAATAAAGACAATACCTGATTTCTCAA

Function

symbol description
mars2 Predicted to enable ATP binding activity and methionine-tRNA ligase activity. Predicted to act upstream of or within methionyl-tRNA aminoacylation. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 25 and spastic ataxia 3. Orthologous to human MARS2 (methionyl-tRNA synthetase 2, mitochondrial).

NR:

description
methionine--tRNA ligase, mitochondrial

GO:

id name namespace
GO:0006431 methionyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004825 methionine-tRNA ligase activity molecular_function

KEGG:

id description
K01874 MARS, metG; methionyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258573.3 True 3865 mRNA 0.45 4 7719880 7725813

Neighbor

gene id symbol gene type direction distance location
LOC103027348 LOC103027348,LOC108430938 coding upstream 45217 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 67390 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 507384 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 546332 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 779518 6933390 ~ 6940362 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 714324 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 949036 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 966137 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 1084215 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 1100701 8826514 ~ 8857516 (+)
G71936 hspa4,LOC108430974,LOC108274676,LOC105011245,LOC100380717 non-coding upstream 937 7699882 ~ 7718943 (+)
G71932 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678 non-coding upstream 34543 7676392 ~ 7685337 (+)
G71931 NA non-coding upstream 44104 7675543 ~ 7675776 (+)
G71928 NA non-coding upstream 67017 7577710 ~ 7652863 (+)
G71917 NA non-coding upstream 192089 7527329 ~ 7527791 (+)
G71944 med12 non-coding downstream 7629 7733442 ~ 7736160 (+)
G71985 NA non-coding downstream 48028 7773841 ~ 7775533 (+)
G72000 NA non-coding downstream 135472 7861285 ~ 7861562 (+)
G72001 NA non-coding downstream 141429 7867242 ~ 7884724 (+)
G72009 NA non-coding downstream 315234 8041047 ~ 8041971 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 834339 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1181086 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1762861 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 2041006 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2214242 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1143315 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1417086 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2242693 9968506 ~ 9970042 (+)
G72621 NA other downstream 2352766 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2547106 10272919 ~ 10626964 (+)

Expression


Co-expression Network