LOC103026574 (ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889)



Basic Information


Item Value
gene id LOC103026574
gene name ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7676287 ~ 7685366 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007258577.3
ACCGACTCGCTGTTGAACGACTCGTCGCTGGCGGACTGAGCATGAGCAGTGGGGTCATGGCTGTAGGGCTGTAGCTCCATTTAACCAGAGCTGTGAGTTCCGTAGCGCCCCAGCAGAGCTGCTAAAACCCGGGGACGAAGAGACAGCCCCGCGGGGATCTTTAATTCTGTAGATAATCGTATGAATTAAGAGTTCGGACCCGAAGAACCGAAGGATGGCTGAGCAGAGGAGCGGATACCGACAGTTGACTAATGAGGAGGAGACACCTGAGGTGCCCCAGGAGGCAAATGACGCTCCCCCACCGTACAACAGCATTGCAGCAGATGCAGCTTTCTTTGACTACAAAGAAGAAGGCAACTATCCCAAACCTCCTTCATACAATGTTGCCACTTCTTTACCTTCATACGATGAAGCAGAGCGGACCAAGGCTGAGTCCAGTGTTCCTCTCGTCGCACCAAGAGACGAGGATTTTGTTGCCAGAGATGACTTTGACGATGTCGACCAATTGCGAGTCGGAAATGATGGCATATTCATGCTGACCTTTTTCAtGGCTTTCCTTTTCAACTGGATTGGCTTCTTCCTGTCCTTCTGCCTCACCACTTCAGCAGCAGGGCGATACGGTGCTGTCTCTGGGTTCGGGCTGTCCTTGGTTAAATGGGTCCTGATTGTCAGGTTTTCCACATACTTTCCTGGATATTTTGATGGGCAGTACTGGCTGTGGTGGGTTTTCCTGGTTGTAGggttCCTGCTGTTCTTCAGAGGATTCGTGAACTACTCAAGAGTGCGCAACATGGCTGATCATTccttctccactcttcctcgaACCAGAGTGCTTTTTATCTATTAAAGATTTTACACCTCAGGACTATTATGACATCAACAAAATGGCAAAACTCAAGCTTCAAATTTTCAGGAGGTAGAAAGCGGAGAAAAGAAGAGTATGTCCGCTATTAATGTCTACATACTGCTTTATAATGAATTAAAGGTTTAGGTACACTTAGGTACATTTACAAGGATGTTAATAGTCCTCCAATCATCTATTTATCAGCTACTAATATCCAGTGCAATCTGCAGTCGCTACATTTAATGCATTCTCTTTTGCTAATATTTCTTAACTAGCATACGCCGAAGATTATAAGAATCAGTCACTTATTTCCTTGCAAAATTCACGATATACCCAGCTGATAGTTTGGGTGATGCAATGGGCATGTTAGTTTTCTCATAAACAGTGCTGGGGAAATTTTAGTTTTACTTTGTGAGTAAGTATTGTAAACAAacgtttcttcttttttgtgaaTTACAGAGAGTAGTGTATTAGGAACAGTGTAATATCAGATGTTATTTACACACGCACTTTGAAGATACATTGAAGGTAAAGCAACAGCCAATTTCAAAGTCAGGGAAATATTAGGCcttatgcaaatatatatgaatGATTTAGTCTTTCTCTTATTGGTGTGATTATACAAAATCattttgctattattattattactattattactattttgctgttattattatcaGGACCAAAAAATCAAGAACAGATGCAAAGCGTTTCAGTCTACTGGTCTAATTTAACATTCAGTGAAACGCCTGAGCGTGTAAAGTGCAAGTTTTATTTCTTCAGTGATCTGTGTTGCTGTAATTTATGATGCCAAAGTAGCAGTAGATAAAACCACTGacttgttgattttttttttttttcttaataaagatTTCAGTGAAAGGCATGTTAATGAAATGGTTCAGCACAACGTGATCTATTGTGATTTGTATGTTTACACTTGTGCaaagtaacttttaataaaGATTGCTTCTATAGTGAGATCAAAA

Function


symbol description
ndfip1 Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Is expressed in axis; nervous system; notochord; and pronephric duct. Orthologous to human NDFIP1 (Nedd4 family interacting protein 1).

NR:

description
NEDD4 family-interacting protein 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007258577.3 True 1836 mRNA 0.41 8 7676287 7685366
Loading

Neighbor


gene id symbol gene type direction distance location
LOC111193047 LOC108430978 coding downstream 87705 7567400 ~ 7588582 (-)
LOC103030823 LOC108430979 coding downstream 189649 7446578 ~ 7486638 (-)
kif3a kif3a coding downstream 231414 7424683 ~ 7444873 (-)
LOC103022894 drd1a,LOC108430983,LOC108274482,LOC107553333,LOC107677717,LOC107598377 coding downstream 410366 7260981 ~ 7265921 (-)
LOC103024994 stc2a,stc2,LOC108430941,LOC108274458,LOC107677705 coding downstream 669353 6985218 ~ 7006934 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding upstream 4819 7690185 ~ 7696908 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding upstream 14524 7699890 ~ 7719056 (-)
med12 med12,LOC106604460 coding upstream 41252 7726618 ~ 7768361 (-)
enox2 enox2 coding upstream 181835 7867201 ~ 8174894 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding upstream 1049711 8735077 ~ 8758128 (-)
G71975 NA non-coding downstream 9735 7656662 ~ 7666552 (-)
G71914 NA non-coding downstream 154546 7521532 ~ 7521741 (-)
G71911 NA non-coding downstream 177804 7497781 ~ 7498483 (-)
G71900 NA non-coding downstream 332853 7343234 ~ 7343434 (-)
LOC111193041 NA non-coding downstream 373979 7301826 ~ 7302308 (-)
G72022 NA non-coding upstream 193313 7878679 ~ 7879316 (-)
G72023 NA non-coding upstream 240028 7925394 ~ 7929086 (-)
G72118 NA non-coding upstream 631285 8316651 ~ 8316977 (-)
G72312 NA non-coding upstream 690721 8376087 ~ 8376585 (-)
G72315 NA non-coding upstream 715502 8400868 ~ 8401244 (-)
LOC103027657 LOC108430978 other downstream 85733 7551185 ~ 7590554 (-)
G71862 NA other downstream 363361 7309775 ~ 7312926 (-)
G71826 NA other downstream 618644 7057110 ~ 7057643 (-)
G71771 NA other downstream 851531 6777239 ~ 6824756 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 1834580 5829621 ~ 5841707 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 88529 7773895 ~ 7842280 (-)
G72336 NA other upstream 954172 8639538 ~ 8645601 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 1480512 9165878 ~ 9174309 (-)
G72453 NA other upstream 1503033 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 2115689 9801055 ~ 9824519 (-)

Expression


LOC103026574(ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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LOC103026574(ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889) Expression in each Bioproject

Bar chart with 7 bars.
LOC103026574(ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
End of interactive chart.

Co-expression Network