Item | Value |
---|---|
gene id | LOC103026574 |
gene name | ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889 |
gene type | coding |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035904.1 |
NCBI id | CM008307.1 |
chromosome length | 27092187 |
location | 7676287 ~ 7685366 (-) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
ndfip1 | Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Is expressed in axis; nervous system; notochord; and pronephric duct. Orthologous to human NDFIP1 (Nedd4 family interacting protein 1). |
description |
---|
NEDD4 family-interacting protein 1-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_007258577.3 | True | 1836 | mRNA | 0.41 | 8 | 7676287 | 7685366 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC111193047 | LOC108430978 | coding | downstream | 87705 | 7567400 ~ 7588582 (-) |
LOC103030823 | LOC108430979 | coding | downstream | 189649 | 7446578 ~ 7486638 (-) |
kif3a | kif3a | coding | downstream | 231414 | 7424683 ~ 7444873 (-) |
LOC103022894 | drd1a,LOC108430983,LOC108274482,LOC107553333,LOC107677717,LOC107598377 | coding | downstream | 410366 | 7260981 ~ 7265921 (-) |
LOC103024994 | stc2a,stc2,LOC108430941,LOC108274458,LOC107677705 | coding | downstream | 669353 | 6985218 ~ 7006934 (-) |
LOC103026262 | gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 | coding | upstream | 4819 | 7690185 ~ 7696908 (-) |
LOC103025952 | hspa4,LOC108430974,LOC108274676,LOC100380717 | coding | upstream | 14524 | 7699890 ~ 7719056 (-) |
med12 | med12,LOC106604460 | coding | upstream | 41252 | 7726618 ~ 7768361 (-) |
enox2 | enox2 | coding | upstream | 181835 | 7867201 ~ 8174894 (-) |
LOC103029481 | fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 | coding | upstream | 1049711 | 8735077 ~ 8758128 (-) |
G71975 | NA | non-coding | downstream | 9735 | 7656662 ~ 7666552 (-) |
G71914 | NA | non-coding | downstream | 154546 | 7521532 ~ 7521741 (-) |
G71911 | NA | non-coding | downstream | 177804 | 7497781 ~ 7498483 (-) |
G71900 | NA | non-coding | downstream | 332853 | 7343234 ~ 7343434 (-) |
LOC111193041 | NA | non-coding | downstream | 373979 | 7301826 ~ 7302308 (-) |
G72022 | NA | non-coding | upstream | 193313 | 7878679 ~ 7879316 (-) |
G72023 | NA | non-coding | upstream | 240028 | 7925394 ~ 7929086 (-) |
G72118 | NA | non-coding | upstream | 631285 | 8316651 ~ 8316977 (-) |
G72312 | NA | non-coding | upstream | 690721 | 8376087 ~ 8376585 (-) |
G72315 | NA | non-coding | upstream | 715502 | 8400868 ~ 8401244 (-) |
LOC103027657 | LOC108430978 | other | downstream | 85733 | 7551185 ~ 7590554 (-) |
G71862 | NA | other | downstream | 363361 | 7309775 ~ 7312926 (-) |
G71826 | NA | other | downstream | 618644 | 7057110 ~ 7057643 (-) |
G71771 | NA | other | downstream | 851531 | 6777239 ~ 6824756 (-) |
LOC103035656 | LOC103035656,LOC108414340,LOC108274783 | other | downstream | 1834580 | 5829621 ~ 5841707 (-) |
LOC103030515 | wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 | other | upstream | 88529 | 7773895 ~ 7842280 (-) |
G72336 | NA | other | upstream | 954172 | 8639538 ~ 8645601 (-) |
G72449 | pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 | other | upstream | 1480512 | 9165878 ~ 9174309 (-) |
G72453 | NA | other | upstream | 1503033 | 9188399 ~ 9225559 (-) |
elp1 | ikbkap,LOC107751344,LOC106611638,LOC105419749 | other | upstream | 2115689 | 9801055 ~ 9824519 (-) |