LOC103027348 (LOC103027348,LOC108430938)


Basic Information

Item Value
gene id LOC103027348
gene name LOC103027348,LOC108430938
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7671558 ~ 7674663 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258578.3
acctcacttccgCTCGGCTCGGGGCAGTATCGGATGGAGGAGCAGTGCTGGTGGTGATGGAGGCGAGCGGCGGGCAGGCCGGGGTGCAGGACTACAGGAGGCGGACCCGCCTGCACTGCCTGAACGGCGGATACCATCTGCTCATCCTGCCGGACGGAGCGGTACAGGGCAGCCGGGAGGAGGAGCACAGATACAGTGTATTGAGGATAAAAGCAGTAAGTCCTGGAGTGGTGGTGATTGAGGGAGTAGAAGCAGGACGTTTCCTCAGCATGAGTGAGGATGGAACTCTGTACGGCTCACCGTCAGTAACAGATGAAAGCTACTTTCTGGAGAGAATAGAGGAGAACCACTACAACACATACCAGTCTCAAAAGTACGGCCCCAACTGGTACGTTGGTTTAAAAAAGAACGGAAACCCCAAAAATGGCTCGAGGACCCACATCGGACAGAAAGCCATTTTCTTCCTTCCTCTACAGCTGGATCAAATGAAAGACTGACCACTAGCAAAGCATTCCACAACAGTActacagggttcttgcaccattttaaaagtcaaatttaatgctttttaagaccttttttagaccgcaataaatataatttaaaacccaaaaacgtagtcataatttctttggtaaaaaaaattgttgctgCTTATGTTATCTAGCTTGCCCCTAACCTTAGATCCCTCCCCTCTAACGTAGCTATCTCGCCGCTGTTattgttagcatgttagctagctcgctgctaatgttactatgttagctagctctccactatccttagttctctcctcagtaatgtagctacATAACTTGATGCTaaggttagtatgttagctagctcgccgcttaccttagttctttcccgtaatgttagctaactcaccgctaaagttagcatgtgtttttcccccagcattaaACTCACCGTCTGAAAGTTTAATACCTACAGCtacaaatttaaaacaatttaagaccttaattaccgGGATTTTAatgtaagacattttaagactttttaagcaCCTGCAGGAACCCTGTACTACACAAACCCTGCTAATTTTAGTCATGtacatatactataaatatgaattttgCTGCTGTCCATTGAAAAACATGCATctgcatttatatttttctccatCGTTTGAACACTGCAGCTTCTTCTGTACACTGTGAAAGTAATTCTGGAGGAGTAAACCAATAGAAAGGctctaaaatttaaattaactttatttattttttgttatcttCTATTTAAATTTAAGATTATTTTTGTCTTCTCAGCTGAAGCCACCATTTTAGagatatatgatttttattgGACAGATAATCTGATCTTATtcacattaatattttagttttaaaacctgcttttaaaatcaaatcacAAGCTACTGTACTCGAAAGGCTGCTCATAAAACATTACATACACTAAGCTAAAATAGATGATTATTTACTTGTATTTATTCTCACAAGATCATTTTAATTTCCACTGTTTTACCTTATTCTTGAATCagcacttattattatttaaaaacatttacagaCTGTGATTTGCACTATGAAATATAATAAACCCTCTCTGTACACTGAc

Function

NR:

description
putative fibroblast growth factor 1

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0060681 branch elongation involved in ureteric bud branching biological_process
GO:0045542 positive regulation of cholesterol biosynthetic process biological_process
GO:0072163 mesonephric epithelium development biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:1902533 positive regulation of intracellular signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005615 extracellular space cellular_component
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0044548 S100 protein binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258578.3 True 1599 mRNA 0.40 3 7671558 7674663

Neighbor

gene id symbol gene type direction distance location
LOC103027052 LOC108430977 coding upstream 19068 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 459062 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 498010 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 731196 6933390 ~ 6940362 (+)
LOC103042411 LOC108430989 coding upstream 952530 6678596 ~ 6719028 (+)
mars2 mars2 coding downstream 45217 7719880 ~ 7725813 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 765474 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 1000186 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 1017287 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 1135365 8810028 ~ 8819533 (+)
G71928 NA non-coding upstream 18695 7577710 ~ 7652863 (+)
G71917 NA non-coding upstream 143767 7527329 ~ 7527791 (+)
G71910 NA non-coding upstream 173288 7497778 ~ 7498270 (+)
G71895 NA non-coding upstream 185148 7486170 ~ 7486410 (+)
G71894 NA non-coding upstream 187407 7483663 ~ 7484151 (+)
G71931 NA non-coding downstream 880 7675543 ~ 7675776 (+)
G71932 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678 non-coding downstream 1729 7676392 ~ 7685337 (+)
G71936 hspa4,LOC108430974,LOC108274676,LOC105011245,LOC100380717 non-coding downstream 25219 7699882 ~ 7718943 (+)
G71944 med12 non-coding downstream 58779 7733442 ~ 7736160 (+)
G71985 NA non-coding downstream 99178 7773841 ~ 7775533 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 786017 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1132764 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1714539 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1992684 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2165920 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1194465 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1468236 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2293843 9968506 ~ 9970042 (+)
G72621 NA other downstream 2403916 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2598256 10272919 ~ 10626964 (+)

Expression


Co-expression Network