LOC103024360 (tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343)


Basic Information

Item Value
gene id LOC103024360
gene name tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25796438 ~ 25830701 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600835.2
CCAGACATCGAGCAGAGCTTCCAGGAGGCGTtggccatctacccaccctgcGGCCGGCGCAAGATCATTCTCTCAGACGAGGGCAAGATGTACGGACGGAACGAGCTAATTGCACGCTACATCAAACTGCGAACAGGGAAAACGCGGACGAGGAAACAGGTGTCTAGTCATATCCAGGTGCTAGCACGAAGGAAGGCCCGGGAGATACAGGACCAGGCAGCCAAGGACAAGGCCCTCCAGAACATGGCCACTATGTCATCAGCCCAGATCATCTCTGCTACTGCTTTCCAAAACAAGATGGCCCTGCAAGGGCTCTCACGGCCTGCGTATCCAGCTGCTGGTGCGTTTTGGCATGGGGCACTTCCAGGCCAGCCTGCACCTACAGAGGACATCAAGCCATTTTCACAACAGAACTATGTCATGCAAGCCACAGGTCCTCCCATCACAGGCTATGAGAGTGCATCAGGGCTGTCTATGTCCCCTAGTGCCCCTCCTTGGCAGGGCCGGAGCATCGCCAGCTCCAAGCTGCGTATGTTGGAGTTCTCTGCATTTCTAGAGCAACCACAAGATCCAGAAAATTTCAACAAGCACTTGTTCGTGCACATCGGTCAATCAAACCCAACGTACTCTGACCCTTATTTGGAGGCGGTGGACATCCGGCAGATCTACGACAAGTTCCCTGAGAAGAAAGGAGGGCTGAAGGAGCTGTTTGAGAAAGGGCCAGCAAACGCTTTCTTCCTCGTCAAGTTCTGGGCGGACCTGAGCGTGAACCTCCAGGATGACAGTAGTTTTTTCTATGGCGTCTCCAGCCAGTATGAAAGCTCTGATAACATGATCATCACCTCCTCCACTAAAGTCTGCTCCTTCGGCAAGCAAGTGGTGGAGAAAGTAGAGACGGAGTACGCACGGTTTGAGAATGGACGATATGTATTTAGAATCCACAGGTCACCCCTGTGTGAATATATGATCAACTTCATTCATAAACTTAAACACCTCCCAGAGAAATATATGATGAACAGTGTATTGGAGAACTTCACTATACTACAgGTTGTTACAAACAGGGACACTCTGGAGACGTTGCTTTGTGTGGCGTACGTGTTTGAAGTATCCACCAGTGAGCACGGCGCCCAGCACCACATCTACAGATTGGTTAAAGACTGATTGGTTAAAGGAGCCTGCTCCTaccactacaactactactactactagtactactactacagcTAAACCACCACAACAGCCCCCCCTACTGACTGCAGTCCTAACCTCCAGTGGTCACGAGGACAcaaggggtgactgactgacCCCACAGCACTGCTGAAGAGCCCCAACGCCCCAGCAGAAGAGGCTTCGCTACTGGAATCGGAACCACAGCCTGAATAAAGTTGTAGAATGTGAAAACGTCATTGTGCGCGCGTGACAGGCGTTTGtcatctctgtgtttttttctcttttatataaCAAAACCTATGAGAGAAGGACATTTGCATGAAgacgttttctctctctctctcttgatcctctttaatctattttttctcAAGAGTGTTTGTTATAGTATCTTTTTACACAGCTGCATGTGTTAGTGTCAAAACTGGTGGTCACCTGGTGACCAAAGATTTATACGACAGTATTTTCAGACTCCatggtggagaaaaaaaagggtATTTGACACTGAAACCTAAGTTATATTTGTTCCATTTGTTGTTTTATCGTATTGATTTGACTATATTTCAGCCAACACACGTAACACAACCCAATAACACAATTTAGTACTGAAACCGTTTATACACTGAAGACAGACCAGTGTTTCCAAActtcagctaatgctaaaatcCTATGTGAGCTGGAtcaacaggacaatgcaaaAGGTCAGAGAAGATCAACTGCAGAAATGGATCTGGAAAACACtgactgggaaaaaaaaaactgtttggaTCCAGTTTGTCATGAACTCTTATAAACTATCATTTATAATGTTGGAGGAAAAACAGTGTGCTATGCTTTCACTCCAAGAAGAATTCTGTCACATCCGAGACCCAAAGAAACCACAGCTGTGCCAACGTGAGACTGCACAGAGAAATCTGGGAAATAAACATGGATCTGTGCAGATGAGAACTTGACAGCAGAACCTTCTTTTTGATTTGACACTGTTTCTATTATTGAGGAAGCTGAATCTGCCAGATAACAGCTCGACAAAAGACATGAAATAAAGCAAGTGTGGCAGCC
>XM_022672430.1
CGAGCAGAGCTTCCAGGAGGCGTtggccatctacccaccctgcGGCCGGCGCAAGATCATTCTCTCAGACGAGGGCAAGATGACGGAACGAGCTAATTGCACGCTACATCAAACTGCGAACAGGGAAAACGCGGACGAGGAAACAGGTGTCTAGTCATATCCAGGTGCTAGCACGAAGGAAGGCCCGGGAGATACAGGTGAAACTGAAGGACCAGGCAGCCAAGGACAAGGCCCTCCAGAACATGGCCACTATGTCATCAGCCCAGATCATCTCTGCTACTGCTTTCCAAAACAAGATGGCCCTGCAAGGGCTCTCACGGCCTGCGTATCCAGCTGCTGGTGCGTTTTGGCATGGGGCACTTCCAGGCCAGCCTGCACCTACAGAGGACATCAAGCCATTTTCACAACAGAACTATGTCATGCAAGCCACAGGTCCTCCCATCACAGGCTATGAGAGTGCATCAGGGCTGTCTATGTCCCCTAGTGCCCCTCCTTGGCAGGGCCGGAGCATCGCCAGCTCCAAGCTGCGTATGTTGGAGTTCTCTGCATTTCTAGAGCAACCACAAGATCCAGAAAATTTCAACAAGCACTTGTTCGTGCACATCGGTCAATCAAACCCAACGTACTCTGACCCTTATTTGGAGGCGGTGGACATCCGGCAGATCTACGACAAGTTCCCTGAGAAGAAAGGAGGGCTGAAGGAGCTGTTTGAGAAAGGGCCAGCAAACGCTTTCTTCCTCGTCAAGTTCTGGGCGGACCTGAGCGTGAACCTCCAGGATGACAGTAGTTTTTTCTATGGCGTCTCCAGCCAGTATGAAAGCTCTGATAACATGATCATCACCTCCTCCACTAAAGTCTGCTCCTTCGGCAAGCAAGTGGTGGAGAAAGTAGAGACGGAGTACGCACGGTTTGAGAATGGACGATATGTATTTAGAATCCACAGGTCACCCCTGTGTGAATATATGATCAACTTCATTCATAAACTTAAACACCTCCCAGAGAAATATATGATGAACAGTGTATTGGAGAACTTCACTATACTACAgGTTGTTACAAACAGGGACACTCTGGAGACGTTGCTTTGTGTGGCGTACGTGTTTGAAGTATCCACCAGTGAGCACGGCGCCCAGCACCACATCTACAGATTGGTTAAAGACTGATTGGTTAAAGGAGCCTGCTCCTaccactacaactactactactactagtactactactacagcTAAACCACCACAACAGCCCCCCCTACTGACTGCAGTCCTAACCTCCAGTGGTCACGAGGACAcaaggggtgactgactgacCCCACAGCACTGCTGAAGAGCCCCAACGCCCCAGCAGAAGAGGCTTCGCTACTGGAATCGGAACCACAGCCTGAATAAAGTTGTAGAATGTGAAAACGTCATTGTGCGCGCGTGACAGGCGTTTGtcatctctgtgtttttttctcttttatataaCAAAACCTATGAGAGAAGGACATTTGCATGAAgacgttttctctctctctctcttgatcctctttaatctattttttctcAAGAGTGTTTGTTATAGTATCTTTTTACACAGCTGCATGTGTTAGTGTCAAAACTGGTGGTCACCTGGTGACCAAAGATTTATACGACAGTATTTTCAGACTCCatggtggagaaaaaaaagggtATTTGACACTGAAACCTAAGTTATATTTGTTCCATTTGTTGTTTTATCGTATTGATTTGACTATATTTCAGCCAACACACGTAACACAACCCAATAACACAATTTAGTACTGAAACCGTTTATACACTGAAGACAGACCAGTGTTTCCAAActtcagctaatgctaaaatcCTATGTGAGCTGGAtcaacaggacaatgcaaaAGGTCAGAGAAGATCAACTGCAGAAATGGATCTGGAAAACACtgactgggaaaaaaaaaactgtttggaTCCAGTTTGTCATGAACTCTTATAAACTATCATTTATAATGTTGGAGGAAAAACAGTGTGCTATGCTTTCACTCCAAGAAGAATTCTGTCACATCCGAGACCCAAAGAAACCACAGCTGTGCCAACGTGAGACTGCACAGAGAAATCTGGGAAATAAACATGGATCTGTGCAGATGAGAACTTGACAGCAGAACCTTCTTTTTGATTTGACACTGTTTCTATTATTGAGGAAGCTGAATCTGCCAGATAACAGCTCGACAAAAGACATGAAATAAAGCAAGTGTGGCAGCC

Function

symbol description
tead4 Enables DNA-binding transcription factor activity. Involved in hippo signaling. Located in nucleoplasm.

NR:

description
PREDICTED: transcriptional enhancer factor TEF-3

GO: NA

KEGG:

id description
K09448 TEAD; transcriptional enhancer factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600835.2 True 2229 mRNA 0.47 11 25796438 25830701
XM_022672430.1 False 2228 mRNA 0.46 11 25796446 25830701

Neighbor

gene id symbol gene type direction distance location
dennd2a dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049 coding upstream 17866 25726951 ~ 25778572 (+)
LOC103023612 NA coding upstream 96383 25680093 ~ 25700055 (+)
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding upstream 182992 25606787 ~ 25613446 (+)
LOC103046607 scamp2 coding upstream 450391 25327566 ~ 25346047 (+)
LOC103027043 LOC108429467,LOC108275406 coding upstream 480123 25313291 ~ 25316315 (+)
mansc4 mansc4 coding downstream 8651 25839352 ~ 25843928 (+)
LOC103028784 LOC108429384,LOC107549582,LOC106584451,LOC107558590,LOC106529550 coding downstream 29828 25860529 ~ 26053114 (+)
LOC103026929 LOC108429451,LOC107728337,LOC108275429,LOC107745105,LOC105018463,LOC106584495,LOC107701192,LOC107558594,LOC105913395 coding downstream 406079 26236780 ~ 26286442 (+)
LOC103027718 akr1d1,LOC108429448,LOC108429446,LOC103366982,LOC103366736,LOC108250100,LOC103380316 coding downstream 644806 26475507 ~ 26484181 (+)
LOC103027405 LOC108429445,LOC108274519,LOC107558592,LOC107668651 coding downstream 659914 26490615 ~ 26514021 (+)
G76536 NA non-coding upstream 82588 25713432 ~ 25713850 (+)
G76552 NA non-coding upstream 141441 25652587 ~ 25654997 (+)
G76543 NA non-coding upstream 149960 25640587 ~ 25646478 (+)
G76541 NA non-coding upstream 151303 25636971 ~ 25645135 (+)
G76540 NA non-coding upstream 152515 25636480 ~ 25643923 (+)
G76646 LOC108429453,LOC107701195,LOC107549599,LOC107728334,LOC108275118,LOC107668648 non-coding downstream 256488 26087189 ~ 26093193 (+)
G76655 NA non-coding downstream 314924 26145625 ~ 26146752 (+)
G76833 NA non-coding downstream 740479 26571180 ~ 26571399 (+)
G76838 NA non-coding downstream 848939 26679640 ~ 26679890 (+)
LOC111193118 NA non-coding downstream 853187 26683888 ~ 26685678 (+)
G76464 NA other upstream 499970 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 515067 25271256 ~ 25281371 (+)
G76423 NA other upstream 611706 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 791923 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 812724 24974941 ~ 24983714 (+)

Expression


Co-expression Network