LOC103034044


Basic Information

Item Value
gene id LOC103034044
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11955624 ~ 11963784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015600993.2
AGATGGCAGTGCTCTTGTAGTCTCTGAGGCTTTGGGTGACTTGAGTGGGCAGGTGGGGGTACATGGAAGGTCCTCTGGACACCTCCTGCCTTGCTGGCGGTCCCTGTGCAGCAGTGCTACTCGGCGCACACATTCTAAGTAAAGGGCTCTGGTTTTATTTTTGGACTGCTATGGAGCCATTGCCTTCCATTTGGAGGAAAGGACTCGCTGAGCTCAACATGAGCCTCTTGTTCTGACACTCCAGGCTGGGAGAAGCAGGCAGCAGCCAGTCGCCCCTGAGCAGCAGAAACACAgGGGACTCTGACTAAAGTGAGCCATCTGTCATCTGTTAAAATCATCTCTTGGGGGCTGACATTTCCATGGCTGTAAATATTGGCAACGCTGCCCAAGCAGGCCTGCTTTCCCAGCAGTACCCACCACCTCTGCTTCCTAAACCTGGGAAGGAAAATGTCCGCCTCCAGAAACTACTTAAGAAAACGGCCAAGAAAAAAGCTGCCTCACAGGCCTCCCAGACACCAGTCCCCTTCCGCTCCAGCCTCTCTCCTGTAAACGAGGCAAGTCCTGACCTGGAGCACAGTGACCATTCTACTCCCCCCAGGACACCAGAGACACCCATCTATGGAGGTACACTACACCCTCGTTTCAATGTCAGGCCACTGTATCAGCATATAGCCTCCCCTTACCCTCACCAGCGATCCTTCAGTTACGGCAAACCAACAAGGTTCTCTCCACAGCCCTTTGTTCCTCCGGGCCTTAGTCCACCACACCACATGGCTCCACTGTTCTCCTATTCAGCTCCATCTCATTCTGTTCCTTTAGTAACTGTTACATCTGTAGCAGCTATAACTACCACCACTGAGTTCATCAGGCATGCAGACATCAAACCAGGTTCAGCCGTAAAGCAAGTAAACAATGTTGTGCTCACTACACAGCTGGAGTCCAACTCAAGTCTTACACCCACCTTCACTACTTCTAAACAATCAAAACCCATGTTTGACGTTccacaaattacaaattacacttCCAAGACTGCAAGTCTAAGAACTTACACGGCATCACCAAAACAAGAAAGGAGTAAAACACCTCTTGCTGAGATAAAGCGAAGTCAAACCCCAACATTTGAGGTTAGGAGGATTGTGACACCAACATCTGAGCTAAAGAGAGAACGAACACCAACCAGAGAAATTAGAAGGGGGCCGACACCCACATCTGAAATTAAACGTGGTGCAACACCTACATTTGAAATCAAAAGGGGTCCAACACCTACATCTGAAATCAGAAGGGGTCCAACACCTACAGCTGAAATCAAAAGGGGGTTGACGCCTACATCTGAAATCAAAAGGGGTACAACACCTACGTCTGAAGTCAAAAGAGGCTCAACGCCAACACCTGAAGTCAAAAGAGGCCCAACACCAACAAAAATTCCTACTACAACACTGGAAGTTAAGAATGGTACTACCCAAACATCTGAGATAAGAGGTGATGCAACAGTAAAAACTGAGACAACGAGAGGACGAACCCCTACAAGAGAACGGACACCGACATTAGAGTtgacaacaacaaaaactcTTACAGGACGACCCAAGACACCCTCCTATCATGTGTCTCCTGCCAGAACCCCTGTCATAGAAATTTCAAGACCTAATCCACTTCTATTTGCTGTTTCCCCTGTGCATATGGAGGGTAGAAGATCCAAAACACCAACCTCAAGTCTACTGGGGCCAAGTGATGAAACTCCTAAAGAAAGCAGCAAAATCCCAGAAGCTATCCAAAATGGGGATGTCCAGATAAAGCCACCTGAGATTTCCGCagataaaaagtcatctgaCAAAATCAAAGAACCTGAATTACCAAAGCCAAAGATCCCCACACAAGATGCTCCAAAGTTTACAGAGACCTCAGAACCCCAAGGTCAGATGACCCCTTCACATGAAAGTTCTAAACCTGTTCCTACAGCTGAGTTCCCATCACCCAAACCACCAAACCATGAGTTTGATAAACCTGTGCTACCCTCACCAGGACTTCAGAGACCAAGAATACCTCCATTTGCAGGTCAAAGACCTAGAACACCCACATCAAAATCACCCAAATCAACATATTATGGATTAACCCCATCTGAATATGTTGCTCATGGGGGGATACAGAGTTTTACACCTGCATTTGGTATCTCAAGACCTATTTCACCAACTACTGCGGTATCCAAACCTCCAGAACCGGTATCACAAGAACCTACACAAAACGCTCAGGGAAAAGCAAAGGATCAGTCTACTCTGAAAGAGGCAGCTAGGCCTGAAGCAGTGCCTAAGCAGTCAGAGACACCTGTGAGTAAAGTACCACCGTCCACAAATGCTGCACCTACAGCTACAGTCTCAGAGCCAACACCGACACCAGCAGTGCAGAAAATACTCAAATCTGTTAAAGAGACACCAAAGTTACCAACaccagaaataaagaaaactgaaGAAAAGGTCTCTGCAATTACTATTCCAACGATTGTGGTGTCTAAAGCTGACACACCACCAGCAGAAGTACCTCAGGCAGTGACTACAGTTCCTGTGACGCCGAGAGTCAGGACCCCAACATACGGCCCTCCTAAACCAAAATCACAGCCCTCTGACTCCACAGTGGAACCCACTAAGCCTGAAACTAAACCAGCCTCAGCACCTGCACAAACTACAACATCTAACCAAACTGCAGACGTTGCTAAAATCTCAAAGCCAACGCCAGCAAAAGatgcagtcactgcaaaaacagacaaagtCTCAAAGAAGCCATCAGCGCCCCAAAAGTCGTTATTAGAGAGGATTAAAGAGCAAAAATCTTTAACAACAGTGGCTTCTGACAAAACTGCAACAGAAAAGACACAAGATAAGCCTCTGGTCAAGCCAGCAGATGACCAGAAGGACAAAGTGAAACCTGAGAAAAAAGATTTAGCAGAGGCTAAAGAGAGTACCCTACAGGAGACTAAGCCTGCAGCGGAGGAGAAGGGGGACGGCAGCTCCCCTCCAGCAGCAGAGCCACTCCTGAAGGCATTTCAGAAACCAAAAGGCATGAAGTCAAAGCTCAGCGGCTGGTCTCGTCTCAagaaacacatggtggtggAGGTCGAGGAGCCTACATTTCCTGATGCGGAGACAGCGCTGAAAAAAGAGGCCCCTGATGGCACTGCCCCGAAACCAAGTGAGCAGAAACCACAGGGCAAAGAAGCAGATAAGATTACTGAAAAATCTGAGAGCCAAGAGGATACAGACAGCCCCAGGGCTGCGAAAATGTGGGACGCTGTCCTCTTCCAAATGTTCTCTACCAAAGAGAGCATCATGCAACAGATAGAAGCCAGCAAAACCGATGAGCAGaagaaagaagaggagaaaCTGGACAAACAGAAAGAAATTCCATCATTTGCACATCGCCTTCCAGTTCTCCTGTATAGCCCTCGGTTTGATGCTAGAAAACTGAGAGAGGCAGCCTCACGGCCTGTGACAAAGATTGCAACAGTATTCGAGATGGGTCTCATAGGCCGCAAAGGCAAAGATGAAGAACCAAAAGACTTCAACAGAACCGCCAAAGGCTTCGCTGCTAGTAAATCCACTGACGTGTAGCTGAAGAGTAGATGTTAAACGGCCAAggatatttgtaattttttcagTGATAGTGTACAGTTCTGTTTATCACACAttcagtttctttaaaatttcattaagttactttaaaagagctaaacagaaaataaatgttatttgtatGAAATACAGTGAGGAATTTAAATGAATCAGTAGTATTGTTTTACTTCACTGCCAGTTTCCCTGACATGTTATTTTTTTGGCAGGGAGAAGTACAAAACATAGGCCTTTCACTTAGATATCCCCCAGTGATTAAAGAATGCATTGATAACAAGCATTCGAACAGCTTCATTTCATTGATCTGTCATCACTGatagtgaaaaaaatgaagaaagtaTGGTGAAAGAATCACAGCCCAACACGTATGCAGTTCTTTCATGGCTGAAGTTTGCCATATGAGTTACACAACAAAATCCAAACCCTGACTGATGTCTCGGAAAGGAgatttgagggtttttttttttgcataatggaAGTGTGAATATTAGGCATCATGGAATATTAAATTGATGTACTTTAATACTCAGTATTCATCATGGTGCTTATAAAAAtcctttcctttttattttttctcttttattgtttttttgcctttttttttttttgacaatgccAGGGAGGCGTAGCTGGCAGAAAAAAGCTGTGATAGTGTGTTCAGTAGAGGAACAGGTTCGACAGGGTAAGGAAAGTTTTATGAGGGTGGAAGGGTGGGAATGGGGTGACTGTGACGTTAAGTAGATGTGGGAATAAGAGAAAAATCTGTATGATAGTGACAGAGCTTCTGATTCTACCATGAACATCCGGAGTAGAAGCAGACAGTGCATTGAGGTATATTGATGACCAGAGCATGTCTAAATGAAGCTGCATGCCTGAAGTGTTGACAGGCAGCTTTCACTGACAGAACCCTAAAACTGAGCATAAAGCCACTGGGTTCTGCTGaactgatagaataattaggtTGGGGATAGCACACAGCAGTGCATACTGACTGTCAACCCTTACGCTTGGCAAAAAAAAGTGGTCAGGATCTCCTTCAGCCTAAAGTCCTCTTAAAATCTGAGATGAATTAATTGTCTACTGTATGTTTTATGCTTGGCCTTTTTTGCATGTATGTCTTCAAACGTCAGACTGGGTACAGGTTCTCTGTGTGGGCTGTGATGTGTATAATGCTTTGCCTTTTATGGTGCGTTGTACTAgatgttgttttatatttatttttgtaataaaaacgCTTGATTTGGA

Function

GO:

id name namespace
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015600993.2 True 4862 mRNA 0.45 3 11955624 11963784

Neighbor

gene id symbol gene type direction distance location
myod1 myod1,myod coding upstream 13807 11939524 ~ 11941817 (+)
LOC103038976 LOC108428833 coding upstream 17244 11925987 ~ 11938380 (+)
LOC103029705 mob2,LOC108411394,LOC108274974 coding upstream 222429 11665815 ~ 11733195 (+)
LOC103028645 LOC108428835 coding upstream 321031 11563332 ~ 11634593 (+)
LOC103024122 LOC108439251,LOC100136550,LOC100304637,LOC107675272 coding upstream 823347 11123179 ~ 11132277 (+)
znf469 NA coding downstream 401581 12365365 ~ 12417357 (+)
LOC103039191 LOC108428816 coding downstream 494761 12458545 ~ 12485409 (+)
LOC103039298 NA coding downstream 526800 12490584 ~ 12547678 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 coding downstream 605053 12568837 ~ 12587543 (+)
trnar-ucg_4 NA coding downstream 639568 12603352 ~ 12603424 (+)
G72993 NA non-coding upstream 3859 11943977 ~ 11951765 (+)
G72946 NA non-coding upstream 137386 11812999 ~ 11818238 (+)
G72905 NA non-coding upstream 275802 11610470 ~ 11679822 (+)
G72893 NA non-coding upstream 330128 11567577 ~ 11625496 (+)
G72882 NA non-coding upstream 432963 11521012 ~ 11522661 (+)
G73001 NA non-coding downstream 14424 11978208 ~ 11978882 (+)
G72992 NA non-coding downstream 69299 12033083 ~ 12050540 (+)
G73029 NA non-coding downstream 161849 12125633 ~ 12126858 (+)
G73031 NA non-coding downstream 166778 12130562 ~ 12130798 (+)
G73045 NA non-coding downstream 230788 12194572 ~ 12196710 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 1328660 10272919 ~ 10626964 (+)
G72621 NA other upstream 1873484 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 1985582 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 2806205 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 2919598 8869128 ~ 9036026 (+)
LOC103043719 NA other downstream 907700 12871484 ~ 12897931 (+)
G73533 NA other downstream 2685045 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 2927750 14891534 ~ 14921003 (+)
svip svip other downstream 3608518 15572302 ~ 15577533 (+)
G74169 NA other downstream 4322892 16286676 ~ 16288329 (+)

Expression


Co-expression Network