LOC103041261 (clpx,LOC108442679)


Basic Information

Item Value
gene id LOC103041261
gene name clpx,LOC108442679
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15362768 ~ 15380544 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601252.2
tcatcatcatcatcatctctccgtgacacagcagcaacagcagcagtagcagtttCAGCCCCGCTCTAAACGGCCCTGTTTACAGCCTACAGCTCGCCCAGCTGCCCCCGCTGAGGGCAGCGCTGTTCGGGGAACACGCACACGGTACGAGGAGTGTTTTACCCCGGGCATGAGCTCTGTCTCCCCCGCAGAGTCACAGATAGCGCCGCCAGTCCCGAGCCGGACTCCCCGCAGCTAACGCTACcgctaaagctaaagctctgCCGGGGGAGAGGGTCTGCTGGAGGAGCTGTCAGTGTCAGGACtcgatctgtgtgtgtgtgcgcgggTGAACTCGGACATCGTGTTCTTTCCCGGGGAACCCAGTAAAGATGTCCGGTACCTGTTCGTCTGCGGCGAGGGTGCTTTTAAATTCTGCACATAAAGGCTTTTCAAGTTCGCGCATTCAGTTTTTTGCCCTCAGTAGACCAGCGTCCCGTGAAGCTCATCTTCCTCCAACAGTACAGGTCCGAGTGTTTTCAGAGACTGCGGTGTGTTTTGCCTCAAAGGACAGCACACCAACTGGTGGATCCAATGATGGAGGAAAGAAGAGTGTGACAGAAATGGTTGGAAAGCGGTCGATGGGTTCGGGGGGCTCAGGAAAAGGAGGCAGTCAGCTCCGTTGCCCCAAATGTGGAGACCCCTGCACACATGTGGAGAcatttgtgtCATCGACACGTTTTGTGAAATGTGAAAAGTGTCATCACTTCTTCGTGGTGCTTTCTGAAACTGACTCTAAGAAGGGTCTGAATAAGGAGGCAGAATCTGCTGCTGAGGCTGTTAAACTGGCATTTGCTCAAAAACCTCCTCCGCCACCTAAAAAGATCTATGCCTACCTCGATAAATACGTAGTTGGCCAGTCATATGCAAAGAAAGTGTTGGCAGTTGCAGTGTACAATCATTACAAACGGATCTACAACAACCTCCCAGCAGGAGGCAGACAGCAGGTGGAGGCAGAAAAGCAGAGTTCTCTGACTCCTCGAGAGTTGCTTCAGATTGCTGGGATCAGTCCACATGGCAATGCTCTTGGAGCTTCTGTTCAGCAACAGGCCGCTCAGCAAGCTCCACAGGAGAAAAGGGGAGGAGAGGTGCTGGAATCAACTCATGCTGATATCAAATTGGAGAAGAGCAACATTGTGTTGCTGGGCCCTACAGGATCTGGTAAAACCCTGTTGGCACAGACCCTGGCTCGGTGCCTGGATGTTCCTTTTGCCATCTGTGACTGTACCACCCTGACTCAGGCTGGTTATGTGGGTGAGGATATTGAGTCAGTCATAGCTAAACTGCTACAAGATGCAAATTATTCAGTGGAGAAAGCCCAGCAAGGAATAGTGTTTCTGGATGAGGTGGATAAGATTGGGAGTGTTCCAGGAATCCATCAGCTCAGAGATGTGGGAGGAGAAGGCGTCCAGCAGGGTTTGTTGAAGCTCCTGGAGGGAACAATTGTGAACGTTCCAGaaaagaacagcagaaagtTGCGAGGAGAAACCGTGCAAGTTGACACAACCAACATCCTGTTTGTGGCATCAGGCGCTTTCAACGGATTGGATCGAATCATTAGCCGCAGGAAGAATGAGAAGTACCTCGGTTTTGGCACACCCTCGAACCTGGGAAAAGGGCGcagagcagctgcagcagcagatctGGCCAACAGTTCTGGGAGTGAGGTGGATGCAGTGGCTGAGATTGAGGAGAAGGACAGACTCTTAAGGCACGTAGAGGCGCGGGATCTCATCGAGTTCGGGATGATTCCTGAGTTTGTGGGAAGACTGCCTGTGGTGGTGCCTCTGCACAGCCTTGATGAAGAGACACTGGTTCGTATTCTCACAGAGCCTCGCAACGCTGTGGTTCCACAGTACCAGGCCCTCTTCAGCATGGACAagtgtgagCTGAATGTGACTCCTGATGCACTGAGAGCCATTGCCAGACTAGCTCTCGAGAGGAAGACTGGAGCCCGAGGCCTCAGATCTATCATGGAGAAGCTGCTGCTGGAGCCCATGTTCGAGGTGCCACACTCAGACATCATGGCTGTGGAACTGAATAAAGAAGTGGTCATGGGCAAGAGTGAACCACGTTACATGAGGGCTCCAGCTAAGGAGAACACAGACGAGGAGTACGACTCTGGCATCGAGGAGGAGAACTGGCCGAGACAGGCAGATGTTGCCAACAACTGAGAATCCAGCAGTGTATCATTCAGGATCTTTCCAGGCTCTGGAACACAGTCACTGAACACAAGAAGCAACTTTCACTTGTCCAGGGCTGGGAGAGGGGACCTCACCTAGACATCTAGATATAATATGGGGATGTTTAAttgttaaaatatgtaaaaatcatAAGGACAGAGAGCAGTAGATTTTTTAATCACCTTCTGGTCCAAATCTTTCCTATAacctgtaaaaagaaaatcctgTACAGAACAACACTATTGGGCTTTAAGGTTTATCTGCAAATGTTAGAGATtgtcaacattttttatatatatacatatatataaatctaaagACAGTTATATATTGTTCATAATAAGATTTTTGTGAGTGACTTTTTTGTGAGGAAGATTTTTTGTGAGTGCACAGTGGAGGGAAAATTTGCCGAAACGTTTGCCTTCAGCGGGATCAGATTATATACACTTCAAGGCATAAGACTGGGAATgttgaattttattatttttggtgcaacttcttctttttctcatcTCAGTAATAGTATTCCAAACTGGGATAATGGCGGTCCTGTTTTCCCATCCTGTCTGTTTTAACGATGGTATTGATTTCTACAGATGCTATGTAAATGTGAAGCTGCTCTAGTCTTGTAgaacaattatttttaaactacCTATAATTTAACCAAGAAAGCAGATAGAAATGATGGTGATTTTGAAGCCCTTCTAGCCTTTCAGTCAAATGTGTTACACAACCGTTGGCTTTTGTCCACCTTGTCATCATAATAGATGTACTGTTTGTCCCAAACCTCAGGCTCGCTGGAGTGTAGTAGATTATAAGGGTTAGTAAGTCCCAGTACTTCTTGTTCTCTAGAAATAAAACCTGCACATACACAGCGCACACACACCGAGTACACTGTATTATATGACACAGtgataaaagtgtgttttaatcaGGATCACACCAGTTTAACTTTCAACTTGCtcgttttattgttttgtttattatttttttgtgaatcagGTCCCCCTTTTCCCATTTCAAACGTCAAACAAACAACCACAAAAGCCATTAAGTCTGGTATCTCAAAGATTTATAGTTGTCattgtttaaaactttaataaaaaaaagatatgtcactgtaa
>XM_022672186.1
tcatcatcatcatcatctctccgtgacacagcagcaacagcagcagtagcagtttCAGCCCCGCTCTAAACGGCCCTGTTTACAGCCTACAGCTCGCCCAGCTGCCCCCGCTGAGGGCAGCGCTGTTCGGGGAACACGCACACGAACCCAGTAAAGATGTCCGGTACCTGTTCGTCTGCGGCGAGGGTGCTTTTAAATTCTGCACATAAAGGCTTTTCAAGTTCGCGCATTCAGTTTTTTGCCCTCAGTAGACCAGCGTCCCGTGAAGCTCATCTTCCTCCAACAGTACAGGTCCGAGTGTTTTCAGAGACTGCGGTGTGTTTTGCCTCAAAGGACAGCACACCAACTGGTGGATCCAATGATGGAGGAAAGAAGAGTGTGACAGAAATGGTTGGAAAGCGGTCGATGGGTTCGGGGGGCTCAGGAAAAGGAGGCAGTCAGCTCCGTTGCCCCAAATGTGGAGACCCCTGCACACATGTGGAGAcatttgtgtCATCGACACGTTTTGTGAAATGTGAAAAGTGTCATCACTTCTTCGTGGTGCTTTCTGAAACTGACTCTAAGAAGGGTCTGAATAAGGAGGCAGAATCTGCTGCTGAGGCTGTTAAACTGGCATTTGCTCAAAAACCTCCTCCGCCACCTAAAAAGATCTATGCCTACCTCGATAAATACGTAGTTGGCCAGTCATATGCAAAGAAAGTGTTGGCAGTTGCAGTGTACAATCATTACAAACGGATCTACAACAACCTCCCAGCAGGAGGCAGACAGCAGGTGGAGGCAGAAAAGCAGAGTTCTCTGACTCCTCGAGAGTTGCTTCAGATTGCTGGGATCAGTCCACATGGCAATGCTCTTGGAGCTTCTGTTCAGCAACAGGCCGCTCAGCAAGCTCCACAGGAGAAAAGGGGAGGAGAGGTGCTGGAATCAACTCATGCTGATATCAAATTGGAGAAGAGCAACATTGTGTTGCTGGGCCCTACAGGATCTGGTAAAACCCTGTTGGCACAGACCCTGGCTCGGTGCCTGGATGTTCCTTTTGCCATCTGTGACTGTACCACCCTGACTCAGGCTGGTTATGTGGGTGAGGATATTGAGTCAGTCATAGCTAAACTGCTACAAGATGCAAATTATTCAGTGGAGAAAGCCCAGCAAGGAATAGTGTTTCTGGATGAGGTGGATAAGATTGGGAGTGTTCCAGGAATCCATCAGCTCAGAGATGTGGGAGGAGAAGGCGTCCAGCAGGGTTTGTTGAAGCTCCTGGAGGGAACAATTGTGAACGTTCCAGaaaagaacagcagaaagtTGCGAGGAGAAACCGTGCAAGTTGACACAACCAACATCCTGTTTGTGGCATCAGGCGCTTTCAACGGATTGGATCGAATCATTAGCCGCAGGAAGAATGAGAAGTACCTCGGTTTTGGCACACCCTCGAACCTGGGAAAAGGGCGcagagcagctgcagcagcagatctGGCCAACAGTTCTGGGAGTGAGGTGGATGCAGTGGCTGAGATTGAGGAGAAGGACAGACTCTTAAGGCACGTAGAGGCGCGGGATCTCATCGAGTTCGGGATGATTCCTGAGTTTGTGGGAAGACTGCCTGTGGTGGTGCCTCTGCACAGCCTTGATGAAGAGACACTGGTTCGTATTCTCACAGAGCCTCGCAACGCTGTGGTTCCACAGTACCAGGCCCTCTTCAGCATGGACAagtgtgagCTGAATGTGACTCCTGATGCACTGAGAGCCATTGCCAGACTAGCTCTCGAGAGGAAGACTGGAGCCCGAGGCCTCAGATCTATCATGGAGAAGCTGCTGCTGGAGCCCATGTTCGAGGTGCCACACTCAGACATCATGGCTGTGGAACTGAATAAAGAAGTGGTCATGGGCAAGAGTGAACCACGTTACATGAGGGCTCCAGCTAAGGAGAACACAGACGAGGAGTACGACTCTGGCATCGAGGAGGAGAACTGGCCGAGACAGGCAGATGTTGCCAACAACTGAGAATCCAGCAGTGTATCATTCAGGATCTTTCCAGGCTCTGGAACACAGTCACTGAACACAAGAAGCAACTTTCACTTGTCCAGGGCTGGGAGAGGGGACCTCACCTAGACATCTAGATATAATATGGGGATGTTTAAttgttaaaatatgtaaaaatcatAAGGACAGAGAGCAGTAGATTTTTTAATCACCTTCTGGTCCAAATCTTTCCTATAacctgtaaaaagaaaatcctgTACAGAACAACACTATTGGGCTTTAAGGTTTATCTGCAAATGTTAGAGATtgtcaacattttttatatatatacatatatataaatctaaagACAGTTATATATTGTTCATAATAAGATTTTTGTGAGTGACTTTTTTGTGAGGAAGATTTTTTGTGAGTGCACAGTGGAGGGAAAATTTGCCGAAACGTTTGCCTTCAGCGGGATCAGATTATATACACTTCAAGGCATAAGACTGGGAATgttgaattttattatttttggtgcaacttcttctttttctcatcTCAGTAATAGTATTCCAAACTGGGATAATGGCGGTCCTGTTTTCCCATCCTGTCTGTTTTAACGATGGTATTGATTTCTACAGATGCTATGTAAATGTGAAGCTGCTCTAGTCTTGTAgaacaattatttttaaactacCTATAATTTAACCAAGAAAGCAGATAGAAATGATGGTGATTTTGAAGCCCTTCTAGCCTTTCAGTCAAATGTGTTACACAACCGTTGGCTTTTGTCCACCTTGTCATCATAATAGATGTACTGTTTGTCCCAAACCTCAGGCTCGCTGGAGTGTAGTAGATTATAAGGGTTAGTAAGTCCCAGTACTTCTTGTTCTCTAGAAATAAAACCTGCACATACACAGCGCACACACACCGAGTACACTGTATTATATGACACAGtgataaaagtgtgttttaatcaGGATCACACCAGTTTAACTTTCAACTTGCtcgttttattgttttgtttattatttttttgtgaatcagGTCCCCCTTTTCCCATTTCAAACGTCAAACAAACAACCACAAAAGCCATTAAGTCTGGTATCTCAAAGATTTATAGTTGTCattgtttaaaactttaataaaaaaaagatatgtcactgtaa

Function

symbol description
clpx Enables peptidase activator activity. Contributes to ATP-dependent peptidase activity. Involved in ATP metabolic process and proteolysis involved in cellular protein catabolic process. Located in cytosol; mitochondrial nucleoid; and nucleoplasm. Part of mitochondrial endopeptidase Clp complex. Implicated in erythropoietic protoporphyria.

NR:

description
PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial, partial

GO: NA

KEGG:

id description
K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601252.2 True 3346 mRNA 0.47 14 15362768 15380544
XM_022672186.1 False 3131 mRNA 0.46 14 15362768 15380544

Neighbor

gene id symbol gene type direction distance location
LOC111193056 rsph3,LOC107580271 coding upstream 4874 15355735 ~ 15357894 (+)
lrrk2 lrrk2 coding upstream 11424 15308529 ~ 15351344 (+)
irx5 LOC108428750 coding upstream 281745 15075459 ~ 15081023 (+)
hsd17b2 NA coding upstream 539434 14814804 ~ 14823334 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding upstream 550270 14801718 ~ 14812498 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding downstream 23298 15403842 ~ 15418547 (+)
slc5a12 slc5a12 coding downstream 55855 15436399 ~ 15449870 (+)
fancf NA coding downstream 244284 15624828 ~ 15627708 (+)
LOC103044315 ano9,LOC108442698 coding downstream 336521 15717065 ~ 15738062 (+)
sigirr sigirr coding downstream 359018 15739562 ~ 15755106 (+)
G73715 NA non-coding upstream 173382 15188895 ~ 15189386 (+)
LOC111193097 NA non-coding upstream 174813 15186249 ~ 15187955 (+)
G73710 NA non-coding upstream 235781 15123872 ~ 15126987 (+)
G73598 NA non-coding upstream 518104 14844445 ~ 14844664 (+)
G73566 NA non-coding upstream 685974 14675873 ~ 14676794 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding downstream 1534 15382078 ~ 15383583 (+)
G73800 NA non-coding downstream 3479 15384023 ~ 15384237 (+)
G73801 NA non-coding downstream 4311 15384855 ~ 15385124 (+)
G73817 NA non-coding downstream 48204 15428748 ~ 15429645 (+)
G73819 NA non-coding downstream 74391 15454935 ~ 15457857 (+)
rpgrip1l rpgrip1l other upstream 441765 14891534 ~ 14921003 (+)
G73533 NA other upstream 713217 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2464837 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4735804 10272919 ~ 10626964 (+)
G72621 NA other upstream 5280628 10078579 ~ 10082140 (+)
svip svip other downstream 191758 15572302 ~ 15577533 (+)
G74169 NA other downstream 906132 16286676 ~ 16288329 (+)
G74649 NA other downstream 3074307 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3090160 18470704 ~ 18479345 (+)
G74832 NA other downstream 3702272 19082816 ~ 19085556 (+)

Expression


Co-expression Network