LOC103021835 (cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280)


Basic Information

Item Value
gene id LOC103021835
gene name cyp11a,LOC108442685,LOC106561846,LOC105007422,LOC107703186,LOC107751280
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15831457 ~ 15839847 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601319.2
TGACACCCTGAGTGGGAGAGCTGTCCctgagagtgacagagagacagagaagcaGAGAGGGGGATAGAACAGAGGAGTGTGAGTGATGGCAGTGAAGTGGAGAGTGTGGTGCAGCCCTGTTGCTCAGTCCCTGGCCATGCTGGAGGTACCAGGCCAGGTGAGAGCATGCCACAGTGGGAGTTTATCCACATCAAGAGAGCAGCTGTTCTCAGAAAACAGTTCCACTGTAAAGCCTTTCAGTGAAATCCCGGGCCTGTGGAAGAACAGCCTCGGAAATCTCTACACCTTCTGGAAACTGGACGGCTTCAAAAACATCCATCACATTATGGTGCACAACTTCAACACTTTTGGGCCAATTTacagGGAAAAAATTGGATACTATGAAAGTGTGAACATCATCAACCCTGAGGATGCTGCTATCTTATTCAAAGCTGAGGGTCACTATCCCAAGAGACTTCGAGTGGAGCCGTGGACCTCCTACAGGGACTACAGGAACCGTAAATATGGCGTTCTTCTCAAGTACGTCTTCTCTTATTATGTTTCTGGTCATGATGTTTCTTCTTCAAATCTGAGCATGAAGTTCACTACAGCTGTTTGTCTCTTCAGGGATGGAGAGGACTGGAGATCTAACAGAGTGATTCTGAACCGGGAGGTGATCTCACCGAAGGTACAGGGAAACTTCGTACCACTTTTGGATGAAGTGGGTCAGGACTTTGTGGCACGAGTCTATAAAAAGATTGAAAGAAGTGGACAGAATAAGTGGACCACAGATCTCTCCCATGAGCTCTTCAAGTATGCCCTGGAATCTGTGAGTACAGTGCTGTATGGAGAACGTCTGGGTCTGCTGTTGGACTACATTGATCCGGAAGCCCAGCACTTTATCGAATGCATCACTAAAATGTTTAAGTCCACCTGCCCCATGCTGTACATTCCACCAGCCCTGCTACGCCGAGTTGGAGCCAAAGTGTGGAAGGACCATGTGGACTCCTGGGATGGCATCTTCAACCATGCGGACCGCTGTATCCAGAACATCTACAGGCAGCTGAGGAAGGAGTCTGGAGCCCAGGGCAAATACCCCGGAGTGCTGGCCAGTCTACTGATGCTTGATCGTCTGTCTATTGAGGAAATCAAGGCCAGTGTTACTGAGCTGATGGCTGGAGGAGTTGACACAACATCCATCACCCTGCTGTGGACACTTTATGAGCTGGCTCGGCACCCTGACCTTCAGGAGGAGCTGAGGGCAGAGATCACGGCTGCTCGTGCTGCTTCAGAGGGAGACACAGTGCAGATGCTGAAAATGGTGCCGCTGGTTAAAGGAGCTTTAAAAGAAACACTTAGGCTACATCCTGTTGCTGTAAGCCTACAAAGATACACCTCTGAGGACATTGTGATCCAAAATTACCATATTCCTTCTGGGACGTTAGTGCAGCTGGGGCTGTACGCAATGGGCAGAGACCACCGTATCTTCCCTCGACCAGAGCAGTATCTGCCCTCTCGCTGGCTGAGGAATGAGAGTCATTATTTCAGGAGTTTGGGTTTCGGCTTTGGGCCTCGCCAGTGTCTCGGCCGCAGGATCGCAGAGACAGAGATGCAGCTCTTCCTCATTCATATGCTGGAGAACTTCAggattgagaaagagaggaagatggaagctAGAAGTAAATTTGAGCTCATTCTGATCCCTGACAAACCCATCATGTTAACCATAAAGCCTCTACACAGCTCCAGATAGCAGGACACTAAAAGTCAGTGACTTGGAGATCAGAGATTTTGTGatggaccttttttttttaaagaggaaTTAAAGGCAACCACTTTCAAACTTCCAGGAGGTACTgatgtaatgttttattgtatctgtGTTTTACTAAGCCATATATAATTTGTTAAATTACTACAGTTCATCTATGATACACTGTAAatgtatctgaaaaaaaaaaaacaggtgtgtgTTTCATTTCACTGTATTAAAAAGCATGAAGGTTTCA
>XM_022672194.1
TGACACCCTGAGTGGGAGAGCTGTCCctgagagtgacagagagacagagaagcaGAGAGGGGGATAGAACAGAGGAGTGTGAGTGATGGCAGTGAAGTGGAGAGTGTGGTGCAGCCCTGTTGCTCAGTCCCTGGCCATGCTGGAGGTACCAGGCCAGGTGAGAGCATGCCACAGTGGGAGTTTATCCACATCAAGAGAGCAGCTGTTCTCAGAAAACAGTTCCACTGTAAAGCCTTTCAGTGAAATCCCGGGCCTGTGGAAGAACAGCCTCGGAAATCTCTACACCTTCTGGAAACTGGACGGCTTCAAAAACATCCATCACATTATGGTGCACAACTTCAACACTTTTGGGCCAATTTacagGGAAAAAATTGGATACTATGAAAGTGTGAACATCATCAACCCTGAGGATGCTGCTATCTTATTCAAAGCTGAGGGTCACTATCCCAAGAGACTTCGAGTGGAGCCGTGGACCTCCTACAGGGACTACAGGAACCGTAAATATGGCGTTCTTCTCAAGGATGGAGAGGACTGGAGATCTAACAGAGTGATTCTGAACCGGGAGGTGATCTCACCGAAGGTACAGGGAAACTTCGTACCACTTTTGGATGAAGTGGGTCAGGACTTTGTGGCACGAGTCTATAAAAAGATTGAAAGAAGTGGACAGAATAAGTGGACCACAGATCTCTCCCATGAGCTCTTCAAGTATGCCCTGGAATCTGTGAGTACAGTGCTGTATGGAGAACGTCTGGGTCTGCTGTTGGACTACATTGATCCGGAAGCCCAGCACTTTATCGAATGCATCACTAAAATGTTTAAGTCCACCTGCCCCATGCTGTACATTCCACCAGCCCTGCTACGCCGAGTTGGAGCCAAAGTGTGGAAGGACCATGTGGACTCCTGGGATGGCATCTTCAACCATGCGGACCGCTGTATCCAGAACATCTACAGGCAGCTGAGGAAGGAGTCTGGAGCCCAGGGCAAATACCCCGGAGTGCTGGCCAGTCTACTGATGCTTGATCGTCTGTCTATTGAGGAAATCAAGGCCAGTGTTACTGAGCTGATGGCTGGAGGAGTTGACACAACATCCATCACCCTGCTGTGGACACTTTATGAGCTGGCTCGGCACCCTGACCTTCAGGAGGAGCTGAGGGCAGAGATCACGGCTGCTCGTGCTGCTTCAGAGGGAGACACAGTGCAGATGCTGAAAATGGTGCCGCTGGTTAAAGGAGCTTTAAAAGAAACACTTAGGCTACATCCTGTTGCTGTAAGCCTACAAAGATACACCTCTGAGGACATTGTGATCCAAAATTACCATATTCCTTCTGGGACGTTAGTGCAGCTGGGGCTGTACGCAATGGGCAGAGACCACCGTATCTTCCCTCGACCAGAGCAGTATCTGCCCTCTCGCTGGCTGAGGAATGAGAGTCATTATTTCAGGAGTTTGGGTTTCGGCTTTGGGCCTCGCCAGTGTCTCGGCCGCAGGATCGCAGAGACAGAGATGCAGCTCTTCCTCATTCATATGCTGGAGAACTTCAggattgagaaagagaggaagatggaagctAGAAGTAAATTTGAGCTCATTCTGATCCCTGACAAACCCATCATGTTAACCATAAAGCCTCTACACAGCTCCAGATAGCAGGACACTAAAAGTCAGTGACTTGGAGATCAGAGATTTTGTGatggaccttttttttttaaagaggaaTTAAAGGCAACCACTTTCAAACTTCCAGGAGGTACTgatgtaatgttttattgtatctgtGTTTTACTAAGCCATATATAATTTGTTAAATTACTACAGTTCATCTATGATACACTGTAAatgtatctgaaaaaaaaaaaacaggtgtgtgTTTCATTTCACTGTATTAAAAAGCATGAAGGTTTCA

Function

symbol description
cyp11a cholesterol monooxygenase (side-chain-cleaving)

NR:

description
PREDICTED: cholesterol side-chain cleavage enzyme, mitochondrial

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0008207 C21-steroid hormone metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function
GO:0008386 cholesterol monooxygenase (side-chain-cleaving) activity molecular_function

KEGG:

id description
K00498 CYP11A; cholesterol monooxygenase (side-chain-cleaving)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601319.2 True 1988 mRNA 0.47 8 15831457 15839847
XM_022672194.1 False 1901 mRNA 0.48 9 15831457 15839847

Neighbor

gene id symbol gene type direction distance location
stoml1 stoml1 coding upstream 2908 15821393 ~ 15828549 (+)
nr2e3 nr2e3,LOC107595245,LOC105892475,LOC107589312 coding upstream 16835 15810409 ~ 15814622 (+)
LOC103046771 LOC103046771,LOC108442701 coding upstream 33006 15785953 ~ 15798451 (+)
sigirr sigirr coding upstream 76351 15739562 ~ 15755106 (+)
LOC103044315 ano9,LOC108442698 coding upstream 93395 15717065 ~ 15738062 (+)
stra6 stra6,LOC107751266,LOC107589314,LOC107703182,LOC107662458 coding downstream 112090 15951937 ~ 15979103 (+)
LOC103023069 commd4,LOC103023069,LOC107576274,LOC107757759,LOC107598913 coding downstream 187615 16027462 ~ 16031438 (+)
neil1 NA coding downstream 192527 16032374 ~ 16040050 (+)
LOC103024759 NA coding downstream 249018 16088865 ~ 16093616 (+)
usp3 usp3,LOC107659494 coding downstream 255362 16095209 ~ 16108728 (+)
G73941 pkp3,LOC107589311 non-coding upstream 66332 15764540 ~ 15765125 (+)
G73891 NA non-coding upstream 161688 15666348 ~ 15669769 (+)
G73832 NA non-coding upstream 202279 15571269 ~ 15629178 (+)
G73819 NA non-coding upstream 373600 15454935 ~ 15457857 (+)
G73817 NA non-coding upstream 401812 15428748 ~ 15429645 (+)
G73970 NA non-coding downstream 55872 15895719 ~ 15896522 (+)
G73975 NA non-coding downstream 153322 15993169 ~ 15993836 (+)
G73990 man2c1,LOC107752311 non-coding downstream 210862 16050709 ~ 16051543 (+)
LOC103025699 NA non-coding downstream 294637 16134484 ~ 16147862 (+)
G74168 NA non-coding downstream 446411 16286258 ~ 16291939 (+)
svip svip other upstream 253924 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 910454 14891534 ~ 14921003 (+)
G73533 NA other upstream 1181906 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2933526 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 5204493 10272919 ~ 10626964 (+)
G74169 NA other downstream 446829 16286676 ~ 16288329 (+)
G74649 NA other downstream 2615004 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 2630857 18470704 ~ 18479345 (+)
G74832 NA other downstream 3242969 19082816 ~ 19085556 (+)
cadps2 NA other downstream 3300302 19140149 ~ 19322775 (+)

Expression


Co-expression Network