LOC103046607 (scamp2)


Basic Information

Item Value
gene id LOC103046607
gene name scamp2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25327566 ~ 25346047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015601855.2
agcagcagcagcactgtgtttattttctctcttcgggctctttttgttctttattctcCGGATTCCTCTTTGGGAGACGCACCGACAGCATGTCCGGCTTCGACAGTAACCCGTTCGGAAACCCAGTAGACGTGAACCCTTTCCAGGATCCCTCTGTCACAGAAGTGACCCACTCTGGAGTGGATCATATGGACCAGTACACCCCCTTTCCAGCCAGTGACACTGGAAATTTGACCGGCTCTACTATTCCTGCCTCTGCTGTTCCCTCACAGCCAGCCGTGCTGCAGCCTTCTGTGGAGCCAAGCCCTCAGgcaactgctgctgcagcccaGGCGAACCTGCTGAGACAGCAAGAGGAGCTGGAGAGAAAAGCAGCTGAGCTGGACCGCAGGGAGCAAGAGCTGCAGAATAGAGACAGAACTACAGGCAAGGAAAACAACTGGCCCCCATTACCCAGAAGCTTCCCCATAAAGCCATGCTTTTACCAGGACTTCTCTGAGGAAATTCCTCCAGAGCATCAAAGGATCTGCAAAATGATGTATTACCTGTGGATGTTGTACTGCGTGACTCTGTTTCTCAACGTGCTCGCATGTCTGGCCTTTTTCACTGCCGACGCGGGTTATGGAGTGGATTTTGGCCTTTCCATTTTATGGTTCATCCTCTTCACTCCATGCTCCTTCCTGTGTTGGTTCAGGCCTGTCTACAAGGCTTTCAGgacGGATAGCTCcatcaatttcttttttttcttttttatcttctttgcCCAAGTGGTGGTGACCGTCATTCAGAGCGTCGGCATACCCAAATGGGGGAACAGCGGTTGGATTTCGGCCATCTCTGTGGTTCGCTCAAACCTAGCTGTGAGTGTTGTAATGATGGTGGTTGCAGCGTTCTTCACTGTGTGTGCCACAATGTCCATCGTCCTACTTAAAATGGTTCACTCTCACTATCGCCGCACCGGGGCCAGCTTTGAGAAAGCCCAGCAGGAGTTCTCTCAGGGCGTCCTCACCAACCGCACCTTCCAGAGCGCTGCTGCCAGCGCCGCCGCCTCCGCAGCTCAGGGCGCCGCTCAGAGGAACTAGACCAACCCAGAACACCTAGAAACGCTTCTCAGTGGGCCTGGGACCCCCAACTCTGCCAGCCCCCATTAACCCAAAGCTGCTGTGTGGTATCTTGTGTGGATCTCCATGTTGCTTTGGTGTTTGGATGGCAGAAGCACTACTTTTGGAATTCACATATTTCTTTATGTGAAACTGAGGGTATAAGGTTAAATGCTCAGTGCAGTGTCTGTATATTTGTACGTatgctttgtgtttgtgtgcgttttttttctcttttggaaATTTGCTTTTGCTgtatttaaactaatttaagGCTGGCCCACATCAGTGAAGGTACGTGAGACTTGTCTGTGTCCATGTATTAAAGAATGGCAATGAACAAAATTGGACTTTGCCCAAAGTGATGTCCACTCAACTTGAAGGCTAGGTTTGCTTGCATTTCGCTATCGCATGATCAGGCTTTACGCTCCACTTAGTTTACAACTACAAATGATGTGCCTTATGATTTCAAACATGTCTTATTGTATTCCATCAGTTTGATCTTCTTGCTAGTGTGCCATACATACATCAGTTGAAGGGCATCTCAACATGGCTGTATTAagagataagataatcctttttATTAGTCCCACAGTGGGGAAAAAGTGACAATTCTTAGGGGTGTTACTGGTGagattataatgtttatttcagcCAAACAGCAAGACAGTCATTCTCTTATTCCAATTTCAGCTATGAAACACTGATTCCATAAGTCTTGCTTCTGGTTGATGAAGGATAATTATCCAAAGCTGCTGTCTGTAACCTCCTGTGGAAAACAGACTAATAGGAGACTGGGCTCACAtgtaaaatatggtttataaaatattaatgatgCAGAAAGTTTCAAATCTGGCATCTAATTTTGCTTAACTGTGACCTTACAGATTTGATTATACTTGTCAGAGAAACATTAGACTtggcttattttaattttctgtaagAAATGAGTAGGTTAGATTGTTTTGCACCTTATGGAAGGGAGAAACTAAattaatcagtaaaaaaaactttttataatgaaataaatcaatatattttaagtgtcaTTATGaattcatgtattttgtcaTGGATATGGATATTTTACTGGATGTAGTGTTTGAgctaattaaacattttgattAACTCTT

Function

symbol description
scamp2 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP2 (secretory carrier membrane protein 2).

NR:

description
PREDICTED: secretory carrier-associated membrane protein 2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015601855.2 True 2233 mRNA 0.44 9 25327566 25346047

Neighbor

gene id symbol gene type direction distance location
LOC103027043 LOC108429467,LOC108275406 coding upstream 11251 25313291 ~ 25316315 (+)
LOC103045999 LOC108429466,LOC106561822 coding upstream 15403 25302235 ~ 25312163 (+)
LOC111193062 NA coding upstream 56312 25269678 ~ 25271254 (+)
hps5 hps5,LOC106584758 coding upstream 64351 25249630 ~ 25263215 (+)
gtf2h1 gtf2h1,LOC107572319 coding upstream 80788 25236419 ~ 25246778 (+)
adpgk adpgk,LOC107549595,LOC107569355,LOC107754317 coding downstream 260740 25606787 ~ 25613446 (+)
LOC103023612 NA coding downstream 334046 25680093 ~ 25700055 (+)
dennd2a dennd2a,LOC107701048,LOC107724656,LOC107549597,LOC107669049 coding downstream 380904 25726951 ~ 25778572 (+)
LOC103024360 tead4,LOC101167205,LOC108246608,LOC107549581,LOC107669037,LOC103024360,LOC108429458,LOC103380343 coding downstream 450391 25796438 ~ 25830701 (+)
mansc4 mansc4 coding downstream 493305 25839352 ~ 25843928 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding upstream 497 25323393 ~ 25327069 (+)
G76468 NA non-coding upstream 8909 25317195 ~ 25318657 (+)
G76463 NA non-coding upstream 33638 25293405 ~ 25293928 (+)
G76367 NA non-coding upstream 343175 24984152 ~ 24984391 (+)
G76349 NA non-coding upstream 405126 24921135 ~ 24922440 (+)
G76505 neo1,LOC108275206 non-coding downstream 10217 25356264 ~ 25359567 (+)
G76514 neo1,LOC108275206 non-coding downstream 39240 25385287 ~ 25390947 (+)
G76526 NA non-coding downstream 204798 25550845 ~ 25551311 (+)
G76539 NA non-coding downstream 289784 25635831 ~ 25642628 (+)
G76540 NA non-coding downstream 290433 25636480 ~ 25643923 (+)
G76464 NA other upstream 31098 25294501 ~ 25296468 (+)
LOC103026466 LOC108429386,LOC108274988 other upstream 46195 25271256 ~ 25281371 (+)
G76423 NA other upstream 142834 25184085 ~ 25184732 (+)
LOC103022708 NA other upstream 323051 24988396 ~ 25004515 (+)
LOC103022391 parvb,LOC108432702 other upstream 343852 24974941 ~ 24983714 (+)

Expression


Co-expression Network