rps5 (rps5)


Basic Information

Item Value
gene id rps5
gene name rps5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 975095 ~ 982603 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603200.2
AAGCAGACATGCGCAGTGCGCGCCTAGCGGAGGCCCTTTCCTGTCTGAGCGAGGCGAGCAGAGAGATCGCGGACACAAGTAGAATGACGGAGTGGGAGACTGCACCAGCTGTGGCTGAGACGCCCGAGATCAAGCTGTTCGGCAAGTGGAGCACTGATGACGTTCAGATCAACGACATCTCCCTCCAGGACTACGTTGCTGTAAAGGAGAAGTACGCCAAGTACCTCCCCCACTCCGGAGGGCGCTATGCCGCCAAGCGCTTCCGTAAAGCCCAGTGCCCCATCGTGGAGCGCTTGACCAACTCCATGATGATGCACGGACGCAACAACGGCAAGAAGCTGATGACCGTGCGCATCGTGAAGCACGCCTTCGAGATCATCCACCTGCTGACCGGGGAGAACCCCCTGCAGGTTCTGGTGAACGCAATCATCAACAGTGGACCCCGTGAGGACTCCACCCGTATTGGTCGTGCTGGTACCGTCAGAAGACAGGCTGTGGACGTGTCTCCTCTTCGCAGGGTCAACCAGGCTATCTGGCTGCTGTGCACTGGCGCGAGAGAGGCCGCCTTCAGGAACATAAAGACCATTGCTGAGTGTCTGGCTGATGAGCTCATCAACGCTGCAAAGGGTTCGTCAAACTCCTACGCCATCAAGAAGAAGGACGAGCTGGAGAGAGTGGCCAAGTCCAACCGTTAAACAAACGCCTGTTTCTTtctacaaaatgcaaaaataaaagaattgaAGAAATTTCT
>XM_015603201.2
TTCGAAACGGAAGCGCGGGCCGAAGCAGACATGCGCAGTGCGCGCCTAGCGGAGGCCCTTTCCTGTCTGAGCGAGGCGAGCAGAGAGATCGCGGACACAAAATGACGGAGTGGGAGACTGCACCAGCTGTGGCTGAGACGCCCGAGATCAAGCTGTTCGGCAAGTGGAGCACTGATGACGTTCAGATCAACGACATCTCCCTCCAGGACTACGTTGCTGTAAAGGAGAAGTACGCCAAGTACCTCCCCCACTCCGGAGGGCGCTATGCCGCCAAGCGCTTCCGTAAAGCCCAGTGCCCCATCGTGGAGCGCTTGACCAACTCCATGATGATGCACGGACGCAACAACGGCAAGAAGCTGATGACCGTGCGCATCGTGAAGCACGCCTTCGAGATCATCCACCTGCTGACCGGGGAGAACCCCCTGCAGGTTCTGGTGAACGCAATCATCAACAGTGGACCCCGTGAGGACTCCACCCGTATTGGTCGTGCTGGTACCGTCAGAAGACAGGCTGTGGACGTGTCTCCTCTTCGCAGGGTCAACCAGGCTATCTGGCTGCTGTGCACTGGCGCGAGAGAGGCCGCCTTCAGGAACATAAAGACCATTGCTGAGTGTCTGGCTGATGAGCTCATCAACGCTGCAAAGGGTTCGTCAAACTCCTACGCCATCAAGAAGAAGGACGAGCTGGAGAGAGTGGCCAAGTCCAACCGTTAAACAAACGCCTGTTTCTTtctacaaaatgcaaaaataaaagaattgaAGAAATTTCT

Function

symbol description
rps5 Predicted to enable mRNA binding activity and rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly and translation. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in ribosome. Orthologous to human RPS5 (ribosomal protein S5).

NR:

description
40S ribosomal protein S5 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02989 RP-S5e, RPS5; small subunit ribosomal protein S5e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603200.2 False 751 mRNA 0.56 6 975095 982581
XM_015603201.2 True 769 mRNA 0.56 6 975095 982603

Neighbor

gene id symbol gene type direction distance location
LOC111193040 NA coding downstream 36911 932017 ~ 938184 (-)
LOC103044579 NA coding downstream 778812 178319 ~ 196283 (-)
LOC103041113 ppt2 coding upstream 5843 988446 ~ 1005877 (-)
LOC103026956 ctnna1 coding upstream 1015553 1998156 ~ 2220364 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding upstream 1453077 2435680 ~ 2488996 (-)
LOC103022920 NA coding upstream 1518385 2500988 ~ 2535981 (-)
dctn4 dctn4,LOC107749746 coding upstream 1678908 2661511 ~ 2678905 (-)
G70477 NA non-coding downstream 60846 913078 ~ 914249 (-)
G70457 NA non-coding downstream 121490 845038 ~ 853605 (-)
G70455 NA non-coding downstream 134941 836229 ~ 840154 (-)
G70454 NA non-coding downstream 146539 826913 ~ 828556 (-)
G70443 NA non-coding downstream 193402 780327 ~ 781693 (-)
G70489 NA non-coding upstream 38132 1020735 ~ 1020992 (-)
G70502 NA non-coding upstream 105240 1087843 ~ 1088144 (-)
G70508 NA non-coding upstream 133324 1115927 ~ 1117269 (-)
G70512 NA non-coding upstream 163180 1145783 ~ 1146014 (-)
G70515 NA non-coding upstream 181600 1164203 ~ 1164470 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other upstream 27283 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 1721592 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 2297553 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 2461492 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 2592958 3575561 ~ 3703751 (-)

Expression


Co-expression Network