LOC103022647



Basic Information


Item Value
gene id LOC103022647
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21912524 ~ 21946943 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_015604495.2
AATGTCAGCGCTCAGAGAGGCGTGTTGTGGTGGGCGGAGGAGCTGTGGCTGAATCAGGGAACTGCTGGCTCTTCTACTTGTGGAATTTTCGTCTAAACCCTGGACGCGTTATGGTTTTAACGCAGGCAGTTGTGGGAGCTTTCCAGTGTTAAAGCAGCGTGGGGGAGCTGGTGGTCCAGTAGTGAGCTCGATTATCTTTAAGGAACAAGACAGGAAGAGCTCAGACACATAATCAAAATGGCCTACAGACGAGATCGCAATATCAGAGACCTGTATGAAGAAAGAATTATGGGACGAACACTGCCAGCACCTTATCAGAGAATAGTTAATGTTGTGGACAGACGGCATCCCTTCAGACGGCCTGAAGATGACTATGATAGAGATACTGACGTTAATTATGGTCGTAGAGGAGGAGGTGGATTCCATGAGCACAGAGCCGGTCATGGGGAGAGAGGACCGTATGGTGGAGAAAAAAGAAGTGAACCAGCTTACAGAAGGGAGGATCCGTATGTGTACAACCGAGGGTTTACAGAAGAACATGCATCATCAAGACAGGACGAGTTCAGgaGCAGTAGCAGAGGGAACTCCAGTAGCAGGGGTCAGAGAGCCCCTCCACGACCACTCTTAAATTTACCCCACAGAGGAGACAACAGCCCTACATATGGTACTACAAATCCAGACCGAAGAGGCGACCGTGAGAGCCAGAAACGTAAATCTTCGTTCTCCCCTGCCCGGGATCACCCACCACTAAAGAGAGAGGAGCCCCCCTCGTCCAGCGCTCGCTCCAGTCGCAGCTACTCTCCAGAGGGGAGCAAAAACAACCAAACTCAGCCCAGCCAGCCAATGACCACTCCCATCCAGCAAGaaaaagagagaccacCCAGCTCTCTCACTTCTGAATCTGGAGATGCATCCCCACACAGCTCAGTATTAGCAACCAAGGAGGAGGTGGCGGGGGCCGTAGTGGAGCAGGTTAAGGAGACCAAAGCAAAGGAGGACCCTGAACAGACTGCAGAGGCACATCGGGCACATGTCATCGCAAACAAAGCTCTGGAGATTGAAAAGTTGTACAGACAGGATTGCGAGACCTTTGGGATGGTGGTGAAGATGCTGGTAGCAAAACAGCCTACTCTGGAGAAGCAGCTGGAGACGGCACTAAAGGAGAATCTTGTAGAGATTAAGGAGCGATGTTTGGAGGACCTGCGTCAGTTTATATCCGAGGTCAATGTCGTGCTTCAAAGTGATCAGGACAAGATTTGACCAACGACACATTGTGCCAAATAAATATGCTGTTTTTTGGGGACCAGTAATAGTTTCTAGTTTCACAAGGTAATAGAGATGTGCCTTTCAGCTTGCAACAGTTCAATTGTTAA

Function


GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

RNA


RNA id representative length rna type GC content exon number start site end site
XM_015604495.2 True 1373 mRNA 0.50 10 21912524 21946943

Neighbor


gene id symbol gene type direction distance location
irak4 irak4 coding downstream 321270 21578912 ~ 21591254 (-)
tmem117 tmem117 coding downstream 353032 21475745 ~ 21559492 (-)
LOC103045028 NA coding downstream 612842 21293359 ~ 21299682 (-)
pclaf kiaa0101 coding downstream 674330 21236632 ~ 21238194 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding downstream 677406 21199250 ~ 21235118 (-)
pdzrn4 pdzrn4 coding upstream 104295 22051238 ~ 22145393 (-)
cntn1 cntn1,LOC108275444 coding upstream 343130 22290073 ~ 22421277 (-)
LOC103026605 NA coding upstream 644677 22591620 ~ 22627981 (-)
LOC103026897 LOC103026897,LOC108428397 coding upstream 683244 22630187 ~ 22637125 (-)
LOC103027474 NA coding upstream 719880 22666823 ~ 22687469 (-)
G75584 NA non-coding downstream 101763 21810540 ~ 21810761 (-)
LOC111193107 NA non-coding downstream 187617 21721645 ~ 21724907 (-)
G75554 NA non-coding downstream 286242 21626069 ~ 21626282 (-)
G75550 NA non-coding downstream 327873 21583365 ~ 21584651 (-)
G75542 twf1,LOC108428409 non-coding downstream 336869 21566322 ~ 21575655 (-)
G75618 NA non-coding upstream 21762 21968705 ~ 21971088 (-)
LOC111193108 NA non-coding upstream 54547 22001490 ~ 22002284 (-)
G75623 NA non-coding upstream 58486 22005429 ~ 22007415 (-)
G75686 NA non-coding upstream 638983 22585926 ~ 22617027 (-)
G75771 LOC106676625,LOC107104322 non-coding upstream 792561 22739504 ~ 22739793 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 639507 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 841278 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 1164316 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 1812274 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1880497 20027162 ~ 20032027 (-)
LOC103024007 LOC108428399 other upstream 495793 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 1377634 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 1880271 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 2293955 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 2844249 24791192 ~ 24798616 (-)

Expression



Co-expression Network