LOC103045029 (LOC108428372)


Basic Information

Item Value
gene id LOC103045029
gene name LOC108428372
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20192525 ~ 20206698 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015604526.2
ctgaaaacaaacacacagttcaGAGCAGGACTAGCACACTCACAAACCTGCTGCACTGAGCTCAGCTAAGGAGTCGACCAAGGGATTTTTACTTGAAGGTAGTTTGATACAGACGCTGATACAGACACCTTTGACAGTATGTATCGTGGTCTGGTGTTGTGGGGGATATTTCTCTGGGGCCAGGTGCTCAGGTCTGAGAGTCAGGATTGTGTGAACAGGCAAGAACTGCAGAGCACTCTTCGTCAAGTCAACAAGCTGCTCTTAGCTCACGAGACTTCGTTCTTACAGAACGTACGCAGCCTCCGCAAGAAACTGAGCCTGCTACAGAGCAGCATGGCCAAACCAAGCAACAACACCACTACAGGCAAGAATAGAGCATCCTGCCCGCCCCCAGAGCTGCTAGCTAATGGCAAGATGCTTGGGAGAGTGTTTCGAGTTGGCCATGAGGTTCACTTCCTTTGCAATGCTGGTTTTGAGCTGACAGGGGCAGAGACCAGAGTGTGTCAGGATTCCCTCACCTGGAGTGGAGAGCATGCAGCCTGCAAGGCTACAGATGCTGGCATAAACAATGATGGTACTTCCTCTATGCCCACATCTCCTTCATCCTCACCCTTAATATCGACCTATGTGCGACCCTCCCGCTGTATTGAGTTCCAGGGTTCGAAACACTGCACCTGTGAGCAGGGTTACAGCATTTACAGCCAGGACAGAGGGCTGTGCACAGACATTGATGAATGTGCGCTCTCCCGTCTGACTCAGCCTGGTCGTCTTTGTCTGCACACCTGTGTGAACACGGCTGGAAGCTTCCGCTGTGAATGTCCCAGAGGGTACGctctcagcagagacagcagaAACTGCCAAGACATTGACGAGTGTGAAGGGGGTTTTCACAACTGCACAggtgagcaggtgtgtgtgaaCACTTTTGGAGGTCACCGCTGTGTGGAGGTTGAGTGTCCTCGCTTCCGCAATGCCTCCTATGTCAAAACATCACCCCAGCGCTGTGAGCGTAATCCATGCCTCGAGGGGGACAAAGCCTGCCTCCAGGCTCCAGTCTCTGTGAACTTCCACTTCATGTCAGTGGTGTCAAACATGACTGCCCCCCGAGTTCTGTTCGGAGTGTCTGCGGCTCGTGTGCTGGGGGACACACTGCGCTTCGGCCTGCTGGGAAACCGGGGAACAGCGCACTTTGCCGTTCAGCGCTCAGGCAAGCAGACCGGACAGCTACTGCTGGTGGACCCTGTTCAAGGCCCTGCCACGCTGGAAGCTGAGGTAGAGATGAGTGAACTGCAGAAGAGGACACTGCTCGGACGATACGTCACCAAGGTCACACTGTTCGTCTCCCCGTATACCTTCTGAACGGAAAGTGAGGAGGAGCTGGACTGGACAATTAAAGTGCTCAGTGCAAAAGTAATTACACCCTGAGACTTACACAAGGAAGTGGTGTTtaatacctgttttttttacccGCCTGACAGGTAACAGTCAGACAAGAGCTTCACCTGAGAAAAATCTAATTCATTCGTTTTAGAAGACCATCAAAGCattttatttccaaatatttcatatttctttaattgcaatatttcatgtctttttcaGTATCTTTGTATCTATCACAATATCTTTGTGTATTTCCACGTTTACTTTAGCCATAATTTCACAGGCTTATGCAATGGTTTATGCTCCTCTGATGAATTCACAAGAtccttatttttctttcaaatgATCTACATTTTAGGtcagtttatatttatcttttttaatgtttcaaataaacagtaattgttTATTCAAA
>XM_015604527.2
TTtctgaaaacaaacacacagttcaGAGCAGGACTAGCACACTCACAAACCTGCTGCACTGAGCTCAGCTAAGGAGTCGACCAAGGGATTTTTACTTGAAGGTAGTTTGATACAGACGCTGATACAGACACCTTTGACAGTATGTATCGTGGTCTGGTGTTGTGGGGGATATTTCTCTGGGGCCAGGTGCTCAGGTCTGAGAGTCAGGATTGTGTGAACAGGCAAGAACTGCAGAGCACTCTTCGTCAAGTCAACAAGCTGCTCTTAGCTCACGAGACTTCGTTCTTACAGAACGTACGCAGCCTCCGCAAGAAACTGAGCCTGCTACAGAGCAGCATGGCCAAACCAAGCAACAACACCACTACAGGAGCATCCTGCCCGCCCCCAGAGCTGCTAGCTAATGGCAAGATGCTTGGGAGAGTGTTTCGAGTTGGCCATGAGGTTCACTTCCTTTGCAATGCTGGTTTTGAGCTGACAGGGGCAGAGACCAGAGTGTGTCAGGATTCCCTCACCTGGAGTGGAGAGCATGCAGCCTGCAAGGCTACAGATGCTGGCATAAACAATGATGGTACTTCCTCTATGCCCACATCTCCTTCATCCTCACCCTTAATATCGACCTATGTGCGACCCTCCCGCTGTATTGAGTTCCAGGGTTCGAAACACTGCACCTGTGAGCAGGGTTACAGCATTTACAGCCAGGACAGAGGGCTGTGCACAGACATTGATGAATGTGCGCTCTCCCGTCTGACTCAGCCTGGTCGTCTTTGTCTGCACACCTGTGTGAACACGGCTGGAAGCTTCCGCTGTGAATGTCCCAGAGGGTACGctctcagcagagacagcagaAACTGCCAAGACATTGACGAGTGTGAAGGGGGTTTTCACAACTGCACAggtgagcaggtgtgtgtgaaCACTTTTGGAGGTCACCGCTGTGTGGAGGTTGAGTGTCCTCGCTTCCGCAATGCCTCCTATGTCAAAACATCACCCCAGCGCTGTGAGCGTAATCCATGCCTCGAGGGGGACAAAGCCTGCCTCCAGGCTCCAGTCTCTGTGAACTTCCACTTCATGTCAGTGGTGTCAAACATGACTGCCCCCCGAGTTCTGTTCGGAGTGTCTGCGGCTCGTGTGCTGGGGGACACACTGCGCTTCGGCCTGCTGGGAAACCGGGGAACAGCGCACTTTGCCGTTCAGCGCTCAGGCAAGCAGACCGGACAGCTACTGCTGGTGGACCCTGTTCAAGGCCCTGCCACGCTGGAAGCTGAGGTAGAGATGAGTGAACTGCAGAAGAGGACACTGCTCGGACGATACGTCACCAAGGTCACACTGTTCGTCTCCCCGTATACCTTCTGAACGGAAAGTGAGGAGGAGCTGGACTGGACAATTAAAGTGCTCAGTGCAAAAGTAATTACACCCTGAGACTTACACAAGGAAGTGGTGTTtaatacctgttttttttacccGCCTGACAGGTAACAGTCAGACAAGAGCTTCACCTGAGAAAAATCTAATTCATTCGTTTTAGAAGACCATCAAAGCattttatttccaaatatttcatatttctttaattgcaatatttcatgtctttttcaGTATCTTTGTATCTATCACAATATCTTTGTGTATTTCCACGTTTACTTTAGCCATAATTTCACAGGCTTATGCAATGGTTTATGCTCCTCTGATGAATTCACAAGAtccttatttttctttcaaatgATCTACATTTTAGGtcagtttatatttatcttttttaatgtttcaaataaacagtaattgttTATTCAAA
>XM_022672304.1
CCAGAGGGCCATCTGAGGATCCAAGCGGTGCAGACTGAGGGCCATGCGTGCTCCAGGAACTCCATCTGCAGTGTTCAGCACATGAGTAGATTGTGTGAACAGGCAAGAACTGCAGAGCACTCTTCGTCAAGTCAACAAGCTGCTCTTAGCTCACGAGACTTCGTTCTTACAGAACGTACGCAGCCTCCGCAAGAAACTGAGCCTGCTACAGAGCAGCATGGCCAAACCAAGCAACAACACCACTACAGGCAAGAATAGAGCATCCTGCCCGCCCCCAGAGCTGCTAGCTAATGGCAAGATGCTTGGGAGAGTGTTTCGAGTTGGCCATGAGGTTCACTTCCTTTGCAATGCTGGTTTTGAGCTGACAGGGGCAGAGACCAGAGTGTGTCAGGATTCCCTCACCTGGAGTGGAGAGCATGCAGCCTGCAAGGCTACAGATGCTGGCATAAACAATGATGGTACTTCCTCTATGCCCACATCTCCTTCATCCTCACCCTTAATATCGACCTATGTGCGACCCTCCCGCTGTATTGAGTTCCAGGGTTCGAAACACTGCACCTGTGAGCAGGGTTACAGCATTTACAGCCAGGACAGAGGGCTGTGCACAGACATTGATGAATGTGCGCTCTCCCGTCTGACTCAGCCTGGTCGTCTTTGTCTGCACACCTGTGTGAACACGGCTGGAAGCTTCCGCTGTGAATGTCCCAGAGGGTACGctctcagcagagacagcagaAACTGCCAAGACATTGACGAGTGTGAAGGGGGTTTTCACAACTGCACAggtgagcaggtgtgtgtgaaCACTTTTGGAGGTCACCGCTGTGTGGAGGTTGAGTGTCCTCGCTTCCGCAATGCCTCCTATGTCAAAACATCACCCCAGCGCTGTGAGCGTAATCCATGCCTCGAGGGGGACAAAGCCTGCCTCCAGGCTCCAGTCTCTGTGAACTTCCACTTCATGTCAGTGGTGTCAAACATGACTGCCCCCCGAGTTCTGTTCGGAGTGTCTGCGGCTCGTGTGCTGGGGGACACACTGCGCTTCGGCCTGCTGGGAAACCGGGGAACAGCGCACTTTGCCGTTCAGCGCTCAGGCAAGCAGACCGGACAGCTACTGCTGGTGGACCCTGTTCAAGGCCCTGCCACGCTGGAAGCTGAGGTAGAGATGAGTGAACTGCAGAAGAGGACACTGCTCGGACGATACGTCACCAAGGTCACACTGTTCGTCTCCCCGTATACCTTCTGAACGGAAAGTGAGGAGGAGCTGGACTGGACAATTAAAGTGCTCAGTGCAAAAGTAATTACACCCTGAGACTTACACAAGGAAGTGGTGTTtaatacctgttttttttacccGCCTGACAGGTAACAGTCAGACAAGAGCTTCACCTGAGAAAAATCTAATTCATTCGTTTTAGAAGACCATCAAAGCattttatttccaaatatttcatatttctttaattgcaatatttcatgtctttttcaGTATCTTTGTATCTATCACAATATCTTTGTGTATTTCCACGTTTACTTTAGCCATAATTTCACAGGCTTATGCAATGGTTTATGCTCCTCTGATGAATTCACAAGAtccttatttttctttcaaatgATCTACATTTTAGGtcagtttatatttatcttttttaatgtttcaaataaacagtaattgttTATTCAAA

Function

NR:

description
PREDICTED: fibulin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015604526.2 True 1798 mRNA 0.48 7 20192525 20200984
XM_015604527.2 False 1792 mRNA 0.48 7 20192525 20200987
XM_022672304.1 False 1682 mRNA 0.49 7 20192525 20206698

Neighbor

gene id symbol gene type direction distance location
alkbh3 alkbh3 coding downstream 111190 20073506 ~ 20081335 (-)
c8h11orf96 si:ch1073-281m9.1,cunh11orf96,LOC103025886,LOC107696240,LOC107661503,LOC107575890,LOC107580776 coding downstream 130450 20060386 ~ 20062075 (-)
ticrr NA coding downstream 141240 20037455 ~ 20051285 (-)
LOC103024527 fam19a5b,LOC103024527,LOC108428378,LOC107696241,LOC107753604,LOC107598818,LOC108274593 coding downstream 219867 19939635 ~ 19972658 (-)
LOC103030439 ube2q2,LOC108436947,LOC107696278,LOC105015542,LOC107661444 coding downstream 420200 19762795 ~ 19772325 (-)
LOC103029688 si:ch1073-174d20.1,dbndd1,LOC108428370,LOC108275320,LOC107723994,LOC107742629,LOC107559144,LOC107570651 coding upstream 36668 20243366 ~ 20253823 (-)
ankrd27 ankrd27 coding upstream 633806 20840504 ~ 20863315 (-)
LOC103032734 LOC108428429,LOC108275416,LOC107577622,LOC107566260,LOC107682256 coding upstream 662989 20869687 ~ 20877379 (-)
trnat-agu_2 NA coding upstream 689405 20896103 ~ 20896176 (-)
LOC103033388 LOC103033709,LOC108428427,LOC105941050,LOC101483816,LOC102290823 coding upstream 696380 20903078 ~ 20905520 (-)
G75232 LOC108428438,LOC108274991,LOC107559147 non-coding downstream 6038 20181150 ~ 20186487 (-)
G75224 rfwd3,LOC106584535 non-coding downstream 34321 20153547 ~ 20158204 (-)
G75223 NA non-coding downstream 41089 20148689 ~ 20151436 (-)
LOC107197502 NA non-coding downstream 62955 20101712 ~ 20129570 (-)
G75208 api5,LOC107753602,LOC107661449 non-coding downstream 157766 20032610 ~ 20034759 (-)
G75265 NA non-coding upstream 66077 20272775 ~ 20276444 (-)
G75243 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 non-coding upstream 71778 20278476 ~ 20284642 (-)
G75270 NA non-coding upstream 95187 20301885 ~ 20302545 (-)
G75286 NA non-coding upstream 362149 20568847 ~ 20569357 (-)
G75295 NA non-coding upstream 587786 20794484 ~ 20794959 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 92275 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 160498 20027162 ~ 20032027 (-)
G75100 LOC108436948,LOC108275266 other downstream 326543 19859694 ~ 19865982 (-)
G74838 wasl,LOC105896696,LOC108275301 other downstream 1119637 19070938 ~ 19072888 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other downstream 1184159 18992668 ~ 19008366 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other upstream 415943 20622641 ~ 20748208 (-)
gatd1 pddc1,LOC102788149 other upstream 858621 21065319 ~ 21071246 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other upstream 1062806 21269504 ~ 21273017 (-)
LOC103024007 LOC108428399 other upstream 2236038 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 3117879 23324577 ~ 23366216 (-)

Expression


Co-expression Network