faap24 (faap24)



Basic Information


Item Value
gene id faap24
gene name faap24
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20877417 ~ 20880566 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_015604555.2
GCGACACAATCTCGCGATACTTTGGGTTTGGCGGGCGCGAGATTTAACTAATACTGTGCGTTGTTGACACTTACTGGACTCATCAGTAAACCTCTCAACAAACATCTGCCGCATTAACTCTTTACCTCTTAAATAGAAGAGAGCTGTGTGGTGTTCGACAGACATTAAACGGGGAGATACGATAAGTCTTTAAGAGTTAAGTTTATACGTtgtgtaggtttttttttggtaggttaggttaggttaagttGGTTGAGAGTTTGTTGAGCTACTTTTTTTATTCGTCTAATGTTTAATCATTCTCGCGGCTCTTCtatctgtcagtgtgtgtgtgtgtgtgtgtgtgtgagagagagcacacagtcCAGCATCACCACCGCGCAGAGCTGTTAAAATGATAGTTAACGCTAGGCTGTAATATTGCTAGCTCATTAAATAGGGACAGATGAAGACTGTGGGGCTGTGATGGATTTAAAGCCCTCGACCGCGGTCAGTGTTAATGCTGTGCCCCCATACGGACATCTCATCATCAGCTCCAAGTGGAGGGGCTCTACTCTAGTGCAGCATTTTAAAGGCAGTGTGAGTCTCATCTATGAAGAAGAGCTTGGTGTTGTAGACATCCACCTCAGTAACAGAAGTTGCATCCTGTATGTGTCAGAAAGTGATCAGATTGCTGGAACTGACTATAAGAGGAAAATTGTCAGATTCAGGAATTCAAACAGCAAACTACAAGGGATTGTTCTTGTGGAGAAAACCCGTCTCAGTGAGCAGTACTTTAGTGGACTGCAGAAGTTTGTGGTGTTGGAGCTGGGCTTAACCTTGCTGCCTGTTTCCAGCCCTGCTGAAGCAGCCCAACTCATTGAGCGAATGGTACATGTAGAAGGCAAGGAGAACCCATTCCGAAAGAGAAGCATGTCCAGACTGCTAGACCCAGTGGTGTTTGACATGGTGCAGCTGATCCCTGGGGTTGGCAAAGTGAAGGCCGTGGCCCTGCTAGAGCAATTCCCCAGCGTCTATGAAATCAATAATGCTTCAGTCCAGGAGCTTGAGTCTGTTGTAGGGCATTCTGCGGCTCAGCGTATCTGGAGTTTTTTCCACAGTCCGTTTAACTGATATTACACCAAGACTTGTGTAACAGGAAACTCACCTGGTCACTGTTAAGTAAAAACATTAACTGGATGCAAAACATGTATtctaaaatcatttatttatataacaggACAGGCTCTacctatggaagcccatttctgccacctgaagaagaa

Function


symbol description
faap24 Predicted to enable chromatin binding activity. Predicted to act upstream of or within interstrand cross-link repair. Predicted to be part of Fanconi anaemia nuclear complex. Orthologous to human FAAP24 (FA core complex associated protein 24).

NR:

description
PREDICTED: Fanconi anemia-associated protein of 24 kDa-like

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0043240 Fanconi anaemia nuclear complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10898 FAAP24; fanconi anemia-associated protein

RNA


RNA id representative length rna type GC content exon number start site end site
XM_015604555.2 True 1265 mRNA 0.45 4 20877417 20880566

Neighbor


gene id symbol gene type direction distance location
wwox wwox,LOC107559152 coding upstream 244874 20289830 ~ 20632543 (+)
LOC103030013 LOC108428369,LOC107701578,LOC107742623,LOC107559153,LOC107723981,LOC107570647,LOC107688789 coding upstream 592744 20278577 ~ 20284673 (+)
LOC103030550 LOC108428435,LOC108274760 coding upstream 600862 20253846 ~ 20276555 (+)
tdrd12 NA coding upstream 647417 20209281 ~ 20230000 (+)
LOC103028218 LOC108428438,LOC108274991,LOC107559147 coding upstream 685800 20160901 ~ 20191617 (+)
LOC103033048 slc7a10b,slc7a10,LOC108428368,LOC108274532,LOC107679961,LOC107752484,LOC105900738,LOC107555706 coding downstream 1264 20881830 ~ 20895098 (+)
ccdc34 NA coding downstream 32215 20912781 ~ 20915900 (+)
LOC103034349 LOC108428426,LOC108274949 coding downstream 36940 20917506 ~ 20923676 (+)
ccdc77 ccdc77,LOC107754361 coding downstream 47724 20928290 ~ 20936087 (+)
LOC103037268 incenp,sb:cb986 coding downstream 94224 20974790 ~ 20990577 (+)
G75309 LOC108428429,LOC108275416,LOC107566260,LOC107682256 non-coding upstream 3536 20869710 ~ 20873881 (+)
G75300 NA non-coding upstream 36436 20840533 ~ 20840981 (+)
G75192 NA non-coding upstream 300172 20576278 ~ 20577245 (+)
G75184 NA non-coding upstream 424965 20452187 ~ 20452452 (+)
LOC111193104 NA non-coding upstream 589370 20284677 ~ 20288047 (+)
G75313 NA non-coding downstream 6589 20887155 ~ 20910244 (+)
G75310 NA non-coding downstream 58785 20939351 ~ 20941050 (+)
G75323 ankrd26,LOC108428422,LOC105913370 non-coding downstream 65047 20945613 ~ 20947024 (+)
G75342 NA non-coding downstream 95401 20975967 ~ 20976313 (+)
G75381 NA non-coding downstream 166249 21046815 ~ 21047280 (+)
LOC103028745 NA other upstream 669462 20203619 ~ 20207955 (+)
LOC103044129 NA other upstream 1339800 19527212 ~ 19537617 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other upstream 1415230 19459958 ~ 19462187 (+)
cadps2 NA other upstream 1554642 19140149 ~ 19322775 (+)
G74832 NA other upstream 1791861 19082816 ~ 19085556 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 142690 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 208056 21088622 ~ 21096906 (+)
mov10l1 NA other downstream 369901 21250467 ~ 21264776 (+)
LOC103028957 rfx7,LOC108428391,LOC108275305,LOC107695007,LOC107563886,LOC100538179,LOC107741823,LOC100694937 other downstream 1874407 22754973 ~ 22780959 (+)
LOC103047784 LOC108428360,LOC108274708 other downstream 1901169 22781735 ~ 22815522 (+)

Expression



Co-expression Network