LOC103032021


Basic Information

Item Value
gene id LOC103032021
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18637244 ~ 18644079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605105.2
AGCCATCCACACAATCTCACAGACAGTGCGAGAATTTCAGTTTGATTTTGGTGGAAGGAAAAGGGTCTGAGTTCACGCGGTAAATCTGCCTCACTGCAGGTAAAAGCACTGCGAAGCGCCACGCCAGGAGATATGGAAGGTATGGTGCAGTCCCGTTCTTTACCGATGAGGATGCGTAATTCTGTTCAGAATCAGgGCGTTAAACAGACTTTTAAGAAGAAGAAATCTAACTCTGTGAATAAGAAGTCTGTGGCTGAAACATACTGCCAGACTGTGACTATGCAGATTAAAACAGAGGACATTCCTGCTGAAGGCCTGACCATAAGCAACCATAGCCAAAATGGCACTGGACCATACTGTGACCAGCCAACTCTGCAATGTCCACAGACTCCAAACGCAACATTAGtGTATTCTACTGAACTTGGAGATCCCCCTTTGCTTCGACAGCCACAGCCCACCACTATGACTGGAATTCAGCAAATCATTGAATGTTTTCGCTCagGTACAGTTCGGGCTAAACTCACGCTCCTGAAAGAGGTGGACACCATTTTTGAGTGTCAACTTTGCAGAAGTCTTTTCCGTGGTATTCCTAATTTGCTTGAACACAGGCAGTCCTACTGCTTGTCCAGGCATCCAGAACCAGAAGACCCATCTCAAGTAATGAAAGACCTACTAGAGGCTGTATTCCCTCAAACAGATTGTCAGGAATCGCCTCTTGAAGTCATTGATGAACCTGTGTATAGGGACCAGACTCCGGCACCAGTTCCTGATTCCCAGCAGCAAAACCCTACGTTATGGAAACTGTGTGGCCGTGAACCTGTCGTGGTCCTCAGAAGGGTTCATCAGCTGCAGCATACTTTATCTGTTACAGTAGATTCAGTTTCCCAGGAAAGAGGGGGCCGTGAGCAAATTGACAGGGAGGCTAATTGTGGAGAGGGTTCTCTCTCACCTGCACAGGACACAATGTCATCACCAAAAAATGATCTAGAATTAAACAGTACGTTTCAATCAAATGTCAAAAAGCAGCGTTACTCCACCCGTAAGGCTGTAGGATTGAAAGATGGAGAAAAAGATAGCAGTAGAGTGAACAGGAGAAAGATCATTCGGCAACAAACTCCGGTGATTGAACGTAATGTCAGAGCATTACGAAAAGACACTGCGAAGAAAGCCAAATCCATGCTTGGACCTGAGAGTATGAagggagaaagaggagaagcCAGTAAGAAGGAGCACCTGTCTGCTGGCAAAATGTGTTCTGTAGGCCAAAGGTCTCCTGACAAGGAACCAAAAGCTCATGGCAACTCTAATGAGGTACAGTGTAACAGTTCGCAAGATGGCACCACACCTGCATCTACTGCACAGCCTGACCAACACCTCTCCACTTCGACTACACCCGTTCCTCAGAAACAACTAAATTCAAAGCCTAATACAGCGGATGTTTCCCCCAAAGGACAGCGTGTCATCCCCTGGATGAAGGACTTGTTTTACTGCGGCCTGTGCAAGTGTAAGTACAGCTCCCAGGTGCTGCTGATGAAACACATGAGCATCGCCCACAAGTTCCTACTGTTGGGAAACAGCCCTGCAGCGAGCCGCACCCCCCCTTCAAGGggagcaaaaacaaaagttaaACCTGAAGATAAGGCTTTTGTGAGGGTCTACTGTTGGTTTTGTGGAAAGCCCTTCTTTACAAAGAAGGCAGTGCGCCGTCACTGTCACAGAGACCACAGACAAAAACTGCAGGAGATTAATGTGCTTTTAAAGCAAGACACAGGCAATAGTCTTGTCCGTGAGCTGCAATCCTTGGAAAGTGGTTTTGTTGCCAGACACACACCACCAGCACCTTCGCTCCAAGCAAGATAGATAGCCTAAGCAGCCTTCCACAGTACTAAACTCAGCTAACAGATGTAGTGTGAACGGTGAagtgaagaggaaaaaaaaaaaaacaaacaaaaaaaaacacaacagtgactCTGTCTATGTGAAGATGAAGGTTATACGAATTATAGAAATGATTCTTTAAAAAAGGGcagtgtcaattttttttttataatttctagTAATTCAACATGTTACAGATATTTGTAAatgcttacatttttattacagttacatTTTTGTGGTTGTTgtgattgttgttgtttttgatgataaatattagtaaaaacattttttatcctttttggAAAACAAGTACGTACTTCCATAGCATATTTAGCATATGGATTCTTGCCCAAGGTTTATTGGTGCGGCCTTTGTAATACTTAAGCTGTTTGAAGTTATTGCTAATACGAGTTATGTCTTTAAGGAGAAATAAAACTTGTCTTGTTTCATTATCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605105.2 True 2337 mRNA 0.44 7 18637244 18644079

Neighbor

gene id symbol gene type direction distance location
LOC103027288 NA coding upstream 2297 18632303 ~ 18634947 (+)
LOC103026996 lamb1,lamb1a,LOC107662456,LOC107595246 coding upstream 22123 18577789 ~ 18615121 (+)
LOC103026700 lamb4 coding upstream 61877 18535874 ~ 18575367 (+)
LOC103030871 NA coding upstream 113069 18514747 ~ 18524175 (+)
ubl7 ubl7a,ubl7,LOC108436908,LOC108274434,LOC107703185 coding upstream 123929 18506606 ~ 18513315 (+)
LOC103032349 znf800 coding downstream 9197 18653276 ~ 18668460 (+)
LOC103033497 grm8,grm8b,LOC107659486,LOC107698172,LOC107598887 coding downstream 28322 18672401 ~ 18838757 (+)
pot1 NA coding downstream 249148 18893227 ~ 18937127 (+)
gpr37 gpr37,gpr37a,LOC107753714,LOC107698235,LOC106584563 coding downstream 295016 18939095 ~ 18950348 (+)
LOC103034777 wasl,wasla,LOC108275301,LOC107598884,LOC107659464 coding downstream 412708 19056787 ~ 19081399 (+)
G74714 NA non-coding upstream 9216 18627649 ~ 18628028 (+)
G74672 NA non-coding upstream 10834 18625071 ~ 18626410 (+)
G74668 NA non-coding upstream 103114 18533808 ~ 18534130 (+)
G74654 NA non-coding upstream 174608 18461444 ~ 18462636 (+)
G74535 LOC108436883 non-coding upstream 261705 18371716 ~ 18375539 (+)
LOC111193102 NA non-coding downstream 58642 18702721 ~ 18703887 (+)
G74770 NA non-coding downstream 313559 18957638 ~ 18970866 (+)
G74810 NA non-coding downstream 348599 18992678 ~ 18994863 (+)
G74831 NA non-coding downstream 438233 19082312 ~ 19082521 (+)
G74833 NA non-coding downstream 441724 19085803 ~ 19086231 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 157899 18470704 ~ 18479345 (+)
G74649 NA other upstream 182047 18454851 ~ 18455197 (+)
G74169 NA other upstream 2348915 16286676 ~ 16288329 (+)
svip svip other upstream 3059711 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3716241 14891534 ~ 14921003 (+)
G74832 NA other downstream 438737 19082816 ~ 19085556 (+)
cadps2 NA other downstream 496070 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 815879 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 883133 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1559540 20203619 ~ 20207955 (+)

Expression


Co-expression Network