duox1 (duox1,LOC108436899,LOC107712499,LOC106561775)


Basic Information

Item Value
gene id duox1
gene name duox1,LOC108436899,LOC107712499,LOC106561775
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18406321 ~ 18426094 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605114.2
AATCGAACTTTTTTGATAGTTTAAGCTCAGTTTAAACTTTTTTGAGGAGGCTAACTAGTGTAATTTCTCTAAACGACATGCAGCACCCTCAGGCTTTTCAtctactttgtgtttgtgttgtttttagctACAGCtcctgcttttctctctctctctctggagacGTTTTATCTCACGTCTTTTCTCATCAagtgttccctctctctctctctctttacaggACTTGCCTTCTGAAGAGCTTGGCGCTTGGCTgctcctctctgtctctgttaaGGATGGATTTACGCAGGAGCGCGTGCTGGACGCTGGTCGCGCTCTCTCTCATCTTCCTCACCGCGCaaACCAGCATCACGTGGGAGGTTCAGAGATACGACGGCTGGTACAATAACCTGGCCTATCACCGCCGCGGGACCGCAGGTGCGCCGCTCATGCGATTCCTGCCCGCGCGCTACTCGGACGGCGCGTACCAGCCTCTGCGCGGGCTGCCCAACGCCCGCAAGATCAGCAACGCCGCCACGCGGGGAGACTCCGCACTGCCCTCACAGCGCAACCTCACCGTGCTGTCCGTCTACTTCGGTTATCATGTATTGTTTGAGATTGCGGAATCCCGAAGACCTGGCTGCCCTCCTGAGTTCATGCACATCCCAGTCTCAGCAGATGACCCTGTCTTTGGGTCAAACTCCACAAATGAAAAAGTCCTGCTCCCTTTCCAGCGTGCCCAGTGGGACCACGACACTGGAAAGAGTCCAAACAATCCCAGAACACAGATCAACCATGTGACAGCTTGGATAGATGGCAGCTCAATCTACGGCTCGTCCAGCTCTTGGTGTGACGCACTGAGGAGTTTCCAAGGAGGTCTGCTCTTGGCAGGTTCTGATGACGGCATACCAAAGCAAAGTGACAGCAACTATTTCATGTGGAGTGCACCAAATCCCTGCAATGGACAAACTGGCCCAGAGGGACTCTATGAGTTTGGGAATTCCTGGGCCAATGAGAACATCTTCACAGTAGCTGAGGGGATTATTTGGTTTCGCTACCATAATTACCTAGCCTCCCAGCTGCAGAAGGAACACCCGTCGTGGTCAGATGAGGAGCTTTTCCAGCATGCCAGGAAGAGGGTTATTGCCACATTTCAGAATATTGCCTTCTACGAGTGGCTGCCAGCGTACCTCGCAGTCTCAGCTCCTCAGTACCCAGGCTATCAGAAATACGTGGATCCAGGCGTCTCTCCTGAGTTCCTGGCTGCTGTGGTGAGGTTTGGGTTGTCTCTGGTTCCCCCTGGTGTCTACATGAGAAACAGGACTTGTCACTACAGGAGCATTATGAACTCTGATGGGAGCAGATCTCCAGCTCTGCGCTTGTGTAACAGTTTCTGGAACAGAAATAATGCAAACCTGCAATCTGCAGAGGATGTGGACGATCTGTTAATGGGTATGGCTTCCCAGAtagcagagagagaggacaacATAATCGTTGAGGATTTAAGAGATTACATGTACGGCACACTGCAGTTCTCTCGTTCCGATGCAGTTGCTCTGACTATTCAGAGAGGACGAGACTTTGGGCTGCCCAGTTTTAATCAGGTCAGAGAAGCTCTCAACATGCCGCCAGTCCAAACCTGGGTAGAGATCAACCCCAAGCTAAACCAGACCAATCCACAGTTGTTTAAAGATCTTGCTGAGCTGTATGGGAATGATATCTCCAAGCTCGAGCTGTTTGTAGGAGCTCTGCTGGAGTCAGACGGGAAAACTGGTGATTTGGTCACCTCCATCTACTTAGATCAGTTTGAACGCATCAGAAATGCAGACCGATTCTGGTTTGAAAATAAGCAAAATGGtttgttTACAGAAGAGGAAATCCAGACTATAAGGAACACCACATACCATGACATCCTTCTGGCTGTTACCAGTGCACAGCAAGGAGACATTCAGGAGAATGTGTTCTTCTGGTTGAATGGTGATCCATGTCCTCAGCCTCAGCAGGTCTCAGAATCTGATCTCGAGCCCTGCACCAAAGCTATTTCCATTAGTTACTTCGGCATCAGCAGCAAAGTTGGCTATGGCATCATAGTGATCATCCTTTTCCTCTTTCCTGTGGTGAGTTTGCTTGCCGCTTACATAGTAGCAAGACTCCGGGCTACCAAGTACAGGAGGTTTTTGAAACGGCTGAGAGGCCCAAGCAAAGATAAAGAACCTGCCAATGGAATTACAGCTTATGAGTGGCAGGGGTACACAGAGACCCCTCAGGCAGTCAGCCTGGTGATCGATGAAAAGAAACGACTTCAGATTTATTCTGAAAATGGATCTACTATGCGCTGTCACAACCTGGGCACCCAGGACTGCATAGAagtgttgctgtccaatgacaGCCAGCATCGTGCCCTTCTCCTGAAGATCCCCAAAGAATACGACCTGGTGCTGTTTTTTGACCATGACATGCAGAGGACAGATTTTGTAGGTCGTCTGCGCTCTCACCTAGAAGACATGAACCAGAGCCTGGCAGTGTCAGAGATGAGTGAAAAAGATCTGCTGAAAGAGGCTGTGACCAAAGAGCAGCGAGCTCAGATTGTGGAGACCTTCTTCAGACAAGCATTTGCAAAAGTTCTAGACATTGAAAAAAGTGATGCAGGAGACCTGAGTGGTGTGTCCAGTAAGAAAACCAAAGAGGCTCTGCAGTGTGAGCTCACAGCAGATGAATTTGCCAACGCTCTTGGACTAAGGCCTGATTCCCTTTTTGTGGAGTCCATGTTTTCTCTGGCAGATAAAGACGGCAATGGATACCTCTCTTTTCAAGAGTTTCTCGATGTTATTGTCATCTTCATGAAAGGAACCCCAGAGGAGAAGTCCAAACTCATGTTCTCCATGCATGACATCAGAGGAGAAGGCTACCTGTCCAAGGAGGAGTTCTGTTCTCTACTAAGATCGTTCCTGGAAATCTCTAGTAGTGTTCTATCTAAGAATCAAGCAGATGATGCAATAGCTGCTATGCTTCAGGCTGCAGGCTTTGATAACAGAGATCGCATTACCTGGGAAGACTTTCATCTGTTACTGCGAGACCATGAAAATGTCCTGCAGTTTGCACAACTCAACATCAAAGGGATGGAGATGAACAGTCCTGACAGGCTGACCCAACCACGTGTGTCCTTTATCATTACAGACAAAAGCAGTTCCCCATTTGAAAAGGATGGTGACTTCATGCACCAGTGCCTCGTTGATGCTGGCCAAGAACTACGTcaaagaaaaaaGTTGGGCTTCTCCAGCCCCAAGCTTTATGTGAAGCCTCACAGAGAGCGTTACATCAGGAGCCCGGTCCAGCAGAAGATCCAGCAGTTTAAGCGCTTTGTGGAAAACTACCGCTGCCATATTGTGTGCCTTATTATCATCTATGGGATCACGGCTGGGGTGGCTCTGGAGAGATGCTATTACTATGGTTTACAGGCTGACTCCTCTGGAGTACCAGAAACCTCCATAGTGGGCATCATCGTGTCTCGAGGATCCGCTGCTGGCGTCTCTTTTCTGTTTCCATACATGCTCCTCACAGTGTGCCGCAACCTGATTACCTTATTCAGGGAGACCTTCCTCAACAGATACATCCCCTTCGACTCCGCCATAGACCTCCATCGCCTCATGGCAATGACGGCTATCATCCTTACAGTTATTCACAGTCTGGGTCATGTGGTCAATATATACATCTTCTGCATCAGTGACCTCAGCATCCTTGCCTGCTTGTTCCCCAAAGTGTTTTCCAATAATGGGTCAGAGATGCCACATGGATGGACCTTCTGGTTCTTTTCTACTGTTCCAGGCCTCACAGGGATCATTCTGCTGTTGATCTTAGCCTTTATGTACGTCTTTGCTACGCACTACTTTAGACGTATCAGTTTTAGAGGATTCTGGATTACACACTATTTCTACGTGCTTGTTTACACCTTGACGGTGATCCATGGTAGCTATGCCCTCCTCCAGGAACCACGCTTCTACATCTACCTGATTCCTCCtgctctcctcttcctcctggaCAAACTCATCAGCCTCAGCAGGAAGAAGGTGGAGATCCCTGTAGTGAAAGCTGAGCTGCTACCATCAGGAGTGACACATCTGGAGTTTAAGCGTCCCCAGGAATTTGCATATCGTTCAGGGCAGTGGGTACGGGTGGCCTGTCTAGAGCTGGGCACGGACGAATACCACCCCTTCACACTGACCTCCGCACCTCATGAGGAGACCCTGAGTCTACACATCCGCGCCGTTGGACCATGGACCAGCAAGCTGAGAGAGGTCTACAACCCAGAACGACTGAAGGAGATAGGATCTTATCCCAGACTGTATCTGGATGGGCCCTTCGGTGAGGGGCACCAGGAATGGAAAGACTTTGAAGTGTCTGTTCTGGTGGGAGGAGGCATTGGAGTAACTCCATTTGCCTCAATATTGAAGGACCTGGTGTTCAAATCTTCAGCGAAACTCAAAGTTCAGTGCAAAAAGGTGTACTTTATCTGGGTAACACGCACACAGCGTCAGTTCGAGTGGGTGTCCGATATCATACGAGAGGTTGAGGAGATAGATGATCACGAGCTGGTGTCTGTGCACATCTACATCACTCAGCTGGCAGAGAAATTCGATCTGCGGACCACCATGCTGTATGTGTGTGAGCGCCACTTCCAGAAGGTGTGGAACAGGAGCCTGTTCACTGGCCTGCGCTCCATCACACACTTTGGTCGTCCACCTTTCTTGGCATTTTTCAACTCCCTGCAGGAAGTTCACCCTGAGGTGGGGAAAATAGGCGTTTTCAGCTGTGGTCCTCCTGGTCTGACAAAGAACGTGGAGAAAGCCTGCCAGCAGATTAACAAACGCGACCAAGCACATTTCATTCATCATTATGAGAATTTCTAGTCTGACTCTTTCTCTTTAATGCACTGTAGCAAAATGCTGCACTGATAATCAAGGGATTTATTTCaatgatacatttattttccattCTGAGTTGAGGTGAACATGCACTGGGTCTGCAATTtgagcttgattttttttttatcagaatttCTTTTCATTAATAGTTTTTGTAAAAGTTTGATTCAGGTAATGAGATGTAAATGACTTTTGGTCTTCACTGTGACATAATAGCAATATGCACTGTTGTGAGTTCTTGATCTTGTACTGTTGTGGTTGTGATCACATCTAAATATCGActtttctgtaaagctgtttcTACGGCTACAGGCACTTTTGGGCTGTCTGCACTTTTAGAAAATTTACATAGAACTGTATTTTTGGCATCAGAGGTTGACATATAAATgacgaaataaataaaattaatcaaaattaaa

Function

symbol description
duox1 Predicted to enable superoxide-generating NAD(P)H oxidase activity. Involved in several processes, including hydrogen peroxide biosynthetic process; positive regulation of wound healing; and response to cAMP. Located in several cellular components, including cell leading edge; cell surface; and endoplasmic reticulum.

NR:

description
PREDICTED: dual oxidase 2-like

GO:

id name namespace
GO:0002523 leukocyte migration involved in inflammatory response biological_process
GO:0006979 response to oxidative stress biological_process
GO:0009617 response to bacterium biological_process
GO:0050665 hydrogen peroxide biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13411 DUOX, THOX; dual oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605114.2 True 5320 mRNA 0.48 33 18406321 18426094

Neighbor

gene id symbol gene type direction distance location
LOC103025779 tjp1b,LOC108414298,LOC107589322 coding downstream 30667 18228352 ~ 18375654 (-)
galk2 galk2,LOC107688931,LOC107557993,LOC107589326 coding downstream 217922 18177682 ~ 18188399 (-)
sqor sqrdl,LOC107662477,LOC107688928,LOC107589329,LOC105892492,LOC103363827 coding downstream 264629 18125787 ~ 18141692 (-)
LOC103024839 ctdspl2a,LOC108275364,LOC107712523,LOC107688927,LOC107589331,LOC107557990,LOC107662443 coding downstream 282623 18116445 ~ 18123698 (-)
scaper scaper,LOC107712524,LOC107662441 coding downstream 295490 17990487 ~ 18110831 (-)
LOC103028541 apba2,LOC108436900,LOC105892347,LOC106584731,LOC106530680,LOC103462423 coding upstream 4244 18430338 ~ 18448555 (-)
parp16 parp16,LOC107662480,LOC107589319,LOC107595248 coding upstream 35281 18461375 ~ 18468113 (-)
dld dld coding upstream 193042 18619136 ~ 18625195 (-)
LOC103034129 NA coding upstream 544318 18970412 ~ 18973313 (-)
LOC103027908 NA coding upstream 549214 18975308 ~ 18977165 (-)
G74640 NA non-coding downstream 55385 18350631 ~ 18350936 (-)
G74599 slc27a2,LOC108414297 non-coding downstream 178645 18218289 ~ 18227676 (-)
G74556 tpm1,LOC108441842 non-coding downstream 540183 17845126 ~ 17866138 (-)
G74447 NA non-coding downstream 592356 17805335 ~ 17813965 (-)
G74407 NA non-coding downstream 1151032 17254917 ~ 17255289 (-)
G74704 lamb1,lamb1a,LOC107662456,LOC107739090,LOC107595246 non-coding upstream 175883 18601977 ~ 18607745 (-)
G74711 lamb1 non-coding upstream 187282 18613376 ~ 18614926 (-)
G74716 NA non-coding upstream 202967 18629061 ~ 18629405 (-)
G74735 NA non-coding upstream 211169 18637263 ~ 18640185 (-)
G74740 NA non-coding upstream 223345 18649439 ~ 18649771 (-)
G74591 isl2,LOC105022634 other downstream 376574 17982747 ~ 18029747 (-)
nrg4 NA other downstream 520926 17877026 ~ 17885395 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other downstream 1935998 16467089 ~ 16470323 (-)
LOC103046265 pkp3 other downstream 2625643 15758303 ~ 15780678 (-)
LOC103040324 NA other downstream 2991708 15381329 ~ 15414613 (-)
G74791 NA other upstream 513080 18939174 ~ 18940464 (-)
LOC103034453 LOC108436916,LOC107753633,LOC107659484,LOC107573489,LOC107752304,LOC108181664,LOC107598834 other upstream 566574 18992668 ~ 19008366 (-)
G74838 wasl,LOC105896696,LOC108275301 other upstream 644844 19070938 ~ 19072888 (-)
G75100 LOC108436948,LOC108275266 other upstream 1433600 19859694 ~ 19865982 (-)
G75207 api5,LOC107696269,LOC107753602 other upstream 1601068 20027162 ~ 20032027 (-)

Expression


Co-expression Network