slc15a5 (slc15a5,LOC107577043,LOC107598876,LOC107753711,LOC107575796)


Basic Information

Item Value
gene id slc15a5
gene name slc15a5,LOC107577043,LOC107598876,LOC107753711,LOC107575796
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19454053 ~ 19459308 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605117.2
GAACAAACATTACTCAGAAGTCACAGGAGAAGATCAGCATGAGCTTCTGCACGTGTAGATGCTGGCAAATAAGACTTCACAGTCCTGTGAGGAATTGCTTTGTTGTTTCCCAGATTGGATAGAGAAGATACTGCAGTGCTCAAGCAGCACTTCACACAGGAGGACCTGAAGAAGCAGCATGGCGTCTCTCAGTGTTCCTGGCCTCCATGGTGGCCGTCAACTGCAAAGGGTCTCGACCGCTCGACGCCCGAGTGGGATGGTCACCCCATATAAGCCTCGAAAGTCCAGAAAGAAGCTGCAGGTGATTATCTGTATTCTTTTTGTGGAATTGTTCGAGAGGTTCACCTTCTTTGGGATTGTTTGCAATATGATCCTCTTTTGCACCATCAAGCTGGGATATCACAATTACCAAGCTGCCACAGTCAACCTGTGTTTTGTTGGAGCCAGTACACTCACACCTGTTCTTGTGGGCTGGTTTGCAGAGACGTGTTTGGGGAGGACAAAAGTACTCTATCTTTGCGCTCTGCTCCATTTTATAGGTACTGCCATGCTCCCTGTTGTTGCATTCCCCTTTGAGGATTTCTACATTGACACACACAATATTATTCACCGACTAGAGCCACGAGAGCAACAGCTTCTCTTCTACGTTGGGCTGCTAGCCGCTGCCCTGGGTATTGGGGGCTTCCGTGCTATTCTATGCCCGTTAAGTGCCTATTACCTTCAGGGTTATGACCAACACCAGATACTGTCCTTTTTTAATTGGCTCTACTGGCTTGTGAATCTCAATTCTACAGTTGTGTTCCTGGGGATCTCCTATATTCAGCAGTCTGTGGGTAAAAACCTGGGCTTTCTCATTCCCTTCACCTCTGTTCTATTGGCTCTTGTTGCGATACACATGGCACGCAACAATCTCATCTTTCATCCAAAGAAAGCCAGTTTGTTGCTGACCACACTGGGTGTGTTCCTAAACTCCTTAAAAATGTCCTGCCTCCATTATCGTCATTTGAGTGGAGACGTGAATAATTGGCTGGACCGTGCCAAGGAGAACAATGGAGGACGCTACAGTGAGACCAGTGTTGAAAATGTTAAGATCCTGGTTAagctttttcctctttttggaCTGCAGCTGCTCTACCGGGCTTGTATAACCCAAATTCCATCAGGATACTACCTCCAGACCATGCATTCAAATCTGAACTTCAATGGTTTCCTCCTTCCTATAGCAGCTATGAATGTGATCAGTATCCTGCCATTGCTAATTTTAGCACCACTACTGGAATTTTTTGGCACCTGTTATCAGTCTTTGAAGAAAACACCTCCTTCTCCAGCCAAATTCATAACAGCGGGACATGCCTGTGCAGCTCTGTCTGCACTAGCTGCAGGGATTACTGAGATCCACAGGAAAGACTTCTCTCAGGTGGAGCAGACACTGTCAGGAACAGTACTACAGGTGTCCTCAATGGCCTGTTTTCAACTTGCACCTCAGTATGTCTTACTGGGTATAGCAGAAGCATTTGTCACACCAGCATGCTCCCTCATCTCTTTCTGTATGACTCCTAGTAACCTCAGAGGCATCTCCCTACACTTCCTCACTCTCTTCTATGGAGGAGGATGCTTTCTGGGTGCTGTTCTGACTCAGTTCTTTTATCTTGTTTCTGGGGGGAACTTCTATCCAAATACACTCAGCGACGGCAATCTGGAGAGATTTTTCTTCACTTTGGCAATTCTGATGACCATAAATAccctgctgttttggagattatCTTGCAGGTACACAGACCTGAGTGCTGAACTGTGTAAAGAAGTAAGACAGAGTCACCTGGCTGAGAAGCTCCTGCAGCATAAATCTTGTCTCCGATTCTACGACACTGTGGAttacactggaacatcagcatCCTTGGAAATGATCCTCTGACTCCTGCATGATGATGGTCAAGCCCCAAGATGCTGGCGTCACACAAACATGAAAGACTTAATACTGGCATACATAATTTAGGATTTTGCTTCCTTTTTCCTCAAAACTGTGCTAGTGAATTGGTTAATGTAACTGAGCCATTTTAAATCTacaataaagttattttgtaaTATG

Function

symbol description
slc15a5 Predicted to enable symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC15A5 (solute carrier family 15 member 5).

NR:

description
PREDICTED: solute carrier family 15 member 5

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14639 SLC15A5; solute carrier family 15, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605117.2 True 2089 mRNA 0.45 9 19454053 19459308

Neighbor

gene id symbol gene type direction distance location
aass aass,LOC107698474,LOC107752301,LOC107753626,LOC107678990 coding upstream 91132 19341280 ~ 19362921 (+)
fezf1 fezf1,fezf2,LOC102788291 coding upstream 119716 19330251 ~ 19334337 (+)
slc13a1 slc13a1 coding upstream 320173 19119547 ~ 19133880 (+)
iqub iqub coding upstream 339104 19098516 ~ 19114949 (+)
LOC103034777 wasl,wasla,LOC108275301,LOC107598884,LOC107659464 coding upstream 372654 19056787 ~ 19081399 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293 coding downstream 34614 19493922 ~ 19503421 (+)
LOC103044412 NA coding downstream 81153 19540461 ~ 19560568 (+)
amn1 amn1 coding downstream 103746 19563054 ~ 19569137 (+)
LOC103045341 NA coding downstream 115006 19574314 ~ 19590443 (+)
LOC103047790 pk,LOC108436941,LOC108275437,LOC107716749 coding downstream 200965 19660273 ~ 19688110 (+)
G74833 NA non-coding upstream 367822 19085803 ~ 19086231 (+)
G74831 NA non-coding upstream 371532 19082312 ~ 19082521 (+)
G74810 NA non-coding upstream 459190 18992678 ~ 18994863 (+)
G74770 NA non-coding upstream 483187 18957638 ~ 18970866 (+)
LOC111193102 NA non-coding upstream 750166 18702721 ~ 18703887 (+)
G74951 fnbp4,LOC107598873,LOC107681673 non-coding downstream 18690 19477998 ~ 19481987 (+)
G74958 kiaa1033 non-coding downstream 47810 19507118 ~ 19510980 (+)
G74970 NA non-coding downstream 68352 19527660 ~ 19527911 (+)
G74982 NA non-coding downstream 81612 19540920 ~ 19543821 (+)
G74992 NA non-coding downstream 134257 19593565 ~ 19595241 (+)
cadps2 NA other upstream 131278 19140149 ~ 19322775 (+)
G74832 NA other upstream 368497 19082816 ~ 19085556 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 974708 18470704 ~ 18479345 (+)
G74649 NA other upstream 998856 18454851 ~ 18455197 (+)
G74169 NA other upstream 3165724 16286676 ~ 16288329 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 650 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 67904 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 744311 20203619 ~ 20207955 (+)
G75383 morc2,LOC107754332,LOC107701074,LOC107674835 other downstream 1563948 21023256 ~ 21025128 (+)
G75391 pus7 other downstream 1629314 21088622 ~ 21096906 (+)

Expression


Co-expression Network