LOC111188173 (LOC108438827)


Basic Information

Item Value
gene id LOC111188173
gene name LOC108438827
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9196453 ~ 9225559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608793.2
CTCCTCGGCCAGACGAACTTCTGTCTGCTCCCAAAGTTTTGTGGCTGTGCAAAAACTGTGGATGGGTTTATGTGAGGCGCGTTATTCCCTACCCGTTTTCGGGCACACCCCTCATCctgctgctctctgattggctgaatgtCAATAGGAACTTTTTGTTGGTAATGATATATGAGCTGGCGGCCAGTTCTAACACAGGGGGTGGGAGTCCACCAGTCAGTCGTAGCCTGTGTTGTGAAGAGGGGAGATATCAGCAGCCAATCCCAACACAGTAGGCTAGGCTTAATGGAAAACGggtgtgaaaagaaaaaaactgctcTGAAGAGCCTGTTGCTCGCTTGTGGCCAATAGAAAGAGGCCCTTTGTGGCCTAGTCTCCTCCCCACCCCCGAACAACGGAGAGGCTCGGGCAGCGCAGGGAAGTTTGGGGAGACGGCTGGATGGGCTCATGTTTTTCTACTCGTTTGGAAATTTACCGAAGCGTTTTTCGGGCACCATGAACTCTTCAAAACGCCTCATTCTTCTGCCCAGCAAACGGATTAAGTTTCGAACGGCGTGGTAAAAACCTTTTAAAGGAAATATGGATTGAACACGGGAGGAGAACGCCTTCCGAACTTTCTCttctccagctctctctcttacaATGGAGTTGAGGCAGAGGAGCCGCTACCCGGAATGGCGCGCGCTCTGGCTCGTGCTTTGGCTCGTGCTCACCCTATCCTGTCTGTCCAGCGCGTCTGAGGAGTTCAGGTACTCCGTCCAGGAGGAGCAGAAGCCGGGCTCCTTCGTGGGAGACATAGCAAAGGATTTGGGCCTCACTCCTCAGAGGCTGACCGAGAGAAAAGTGCGCATAATTTCGGACTCCGAATACTTTGAAATCAACGCGGCCAGTGGCGCCCTGGTCATCCGGGAGATTATCGACAGGGAGCGCATGTGCGAGTCGAGCGCGGCGTGTTATCTACACCTTCAGATCGTTCTCCAGGACCCGCTGGAAATACATCGCGTGCGCGTGGATATCTTGGACGTTAACGACAACGCGCCGCAGTTCCCGGCGAGGAACTCCTCACTGGAGATCTCGGAGGCGGCCGCGCCTGGAACGCGCTTCCGTCTGGAGAGTGCGCGGGACCCCGACGTGGGTGTGAACTCTTTGCGTACGTACCAACTAGCACCCAGCGACTGCTTCAGTCTACGCGTCGAGACCAAGAGCGACGGTAGTAAGTTCCCGGAGCTCGTGTTGGAGAAGGCCTTAGACCGAGAGACGCAGGACTCGTTTCGGCTGCTGCTCACGGCCGTGGACGGTGGGCAACCCGAAAAATCGGGCACCACCCTGCTGCTCATTAAAATCCTGGACGTGAATGACAACGCACCAGTTTTTGATCAGTCTGTGAAAAGGGTCAGTCTTTTAGAAAACTCTCCAGTGGGAACTATTGTAGCTAAACTCAACGCCACTGATGCAGACTCTGGAATGAATGGGGAAGTGACTTTCCTGTTCGGTAAATACACCCCAAACAGAATTCATAATCTTTTCAGTGTGGATTCTAAAACTGGGGAAATTCGTGTTACAGGGGAGGTGGATTATGAGCAAACCAGTGTATATGACATTACATTTGAGGCCCGGGATGGCGGGACCCCTGCCATGGAAGGTTCTTGTAATGTCAAAGTAGAAATAACAGATGTGAATGATAACACTCCAGAAGTGACACTTACCTCACTCTCTAGCCCCATCAGCGAGGATGCTAAAACCGGCACTGTCATCGCACTAATCAGCGCAAAAGACTTAGACTCTGATAAGAATGGCCAGCTGACGTTAAAGGTGTCACCAGGCTTGCCATTTAAACTCAAATCTGCTTTTGGGGAACATTACACCCTTGTCACTGATGGCCGATTAGACAGAGAGACTGTCCCTGAGTACACTGTTGTTGTCACAGCAACAGATGCAGGCACACCTCCCTTGTCTTCTCAGAAGACATTTGTGGTTAGTCTTTCTGATGTAAATGATAATGCTCCACTGTTCTCCCAATCCTCTTACTCTGTAGACATTCCGGAGAATAATTCCCCCGGTACTCCCATAGTGGCTGTCTCTGCTTCAGACCCAGATTTGGGAGACAATGCCCGCCTAACATACTCAATTTTAGCCTCCACAATCCATGGCAGCCCTGTGTCATCTTATGTCTACATCAATCCAGAAAATGGGAATATCTTTACTATGCGCTCGATAGACTATGAGCAGATGAATGCTTTTAAAATAGAAGTGCAGGTACATGATGCTGGAACGCCCCCACACAGCTCCAATGTCACCGTCCATGTTTTTGTCATTGATCAGAATGACAACTCACCTGTCATTCTTTACCCCGCCCACTCGGACGACTCAGGCCTCCAGCTGACCGTCCCCCGCTCTGCCCCTGTGGGCCACCTAGTGAACAAGATTGTAGGCTTTGACCCGGACAGTGGGCACAATGCTTGGCTGTTCTACAGCATCACTGGAGACGATGCTGCATTCTTCCGCATTGGAGCAAACACAGGTGAGCTGCGCACCACACGAAAACTGGCTGACGAAGACCAAGATGGCAGGGAACGTTCAGCTTACAGTTTTGTGGTGGTCGTGCAGGACAATGGCCAGCCTTCCAAGTCCACTTCAGTCCCCATCACAGTCAGTGTGGAGGAGAAGAGCATTGATGCAGTTCCGGATTCCCACAAACCTTTCTCCCGGAAAGTTAGCGGGATGACAGATGTCACCTTGTACCTCATCATATCGCTGGGCTGTGTGACATTAGTCTTTCTTGTAACCACTGTAGTGGTGGTGGTGCGGTGCCTCAAAAACAAGGACGACTTGACATGCTGCTACTCAAGGAAGGGCTTCCGTTCCAGGCATGCCTACCAGCAGCGCCCTCATAAAGACCTACACCTCCAGCTCAACACAGATGGGCCGATCCGGTACATGGAGGTGGTCGGGGGCCCTCAGGAGCCCAACACACGCACATATAGGCCCTGCTACTCAACTCTTTCCAGCAGGAGTGACTTTGTGTTTGTCAAGACTCCCATGCTGAGCCATAACAACACATTAAACATGACTCTAACGAGGAAGCACTTAATGAACTCAGCCAATGAGCAAAAACCCCCTAACACTGACTGGCGTTTTACCCAGAACCAGCGGCCCGGACCCAGCGGAGCTGCTGCCACCCCAGAGGTTGCTGTGGGAACAGGACCCTGGCCCAACCCCCCCACTGAAGCCGAGCAGCTCCAGGCTCTTATGGCCGCCGCCAATGaAGTGAGTGAGGCTACCAACACTCTGGGTCCGGGCACCATGGGCTTGAGCACCCGCTACAGCCCGCAGTTCACCCTGCAGCACGTCCCCGACTACCGTCAGAATGTCTACATCCCCGGCAGCACGGCTACGCTCACCGCCAACCCCCAGCAGCCCCAGCAGGCCCTGCCGCCTCAGGTCTCTGCCGCCCAGCCTGAACCACCAAAGGCCCAGACACCTGCCAGCAAGAAGAAGTCCACCAAGAAGGAGAAGAAGTAAAGATTGAGAATGAGACAGAGGGGTGGTGCTGGATGAGGTAGACAGTGAGGACGGAAGGAGGTAGACATAAGAAAGCAGATaagaatggatagatggatggaaatatacctagagagagaaaaagaaagaggtgaGTTAGGGAAGAACATAGCTTACTCTTCTCTTGCTGCTTCAGAGATTGGTGAGCTTTGGTGCACTGAACTTTAAAGGATGtggaaaaaatgagaagaaGGAAGTGAGGAAACATCAGTGTATCAATGTGCACCTTCCTCTGGAGTTCTTTTGTcttctttattattttgatttttggttttgaaACACTTTTTGTTGTTACTCTCTTGACTTCTGACTGTGGTGGGTGTGTGCAAGAAAGACAGCCCACCGTCTGTTCCAGTCCTAGCTTTCATTCACTGTATTCCCTGTATTATACCACGGCtgattatacagtatgtgttgcGTATGATAGGATAATTTTTCACACAGAGATTTAATCACGGTTCCATTAGACCTCTGGTCTAGCTGAATGTTTTGGAAGTTGGGAgagattttactttttattttttttttgttggctttgttttgtttgctgtttCGTTTTGAAGGACAATACTTTGACGTGTATGGCATCATCAGGTGTATAACACAGTGCTTTTGTGATGGTGATCTTGCTTTTACTTCTTCACTCTGAGGGAGAGGGTTAACCTGTGGTGATCATCATGTTGAAAATGACTTATGATAGTAATGATTATATTGATGATAATTTGATTTGATGCtttgagtttttgtttttcttctttttgtataTCCTGTGCTGCATTTCCTGGCCTTACCCAGAAGAAAAGTGTTGATTTTTGTAATATATCACTTTGATGTTTGATTTGATTCTGATGTTTGacacttttctttcttcttcctcAAATCGTTTCCTTTTCAGGTAAATAAATAGCTGTTGCTGTGCCTAGGCTACCACTGATGGAATACatgaaatctaaaatctaacaAAGTATGTGAGGGTTCAGCTTTTAAGGAATATAATACAggtaatccttttttttttgcatgacgcATTTTAGCCAAACATCTTATAaatctaaagctaaaactaggaGTAACTATGCATTGCTTGACAGAGAAGAACCCCTTGAGATCAACTCCATTTGTAGCATCAATTGGATGTTAGAATGAGAAGATGAATAATTGCTCTTTTCTAAACGATCCATTgtgtccttttttctttttttctttagtttttgagCTTGACTCACTTCTCCATTAGTGAGTTGGgaagttttttaaaataatttcaaaagCTCTTCAAATTGTGCTTTCACCAGCCCAGTGCATGCGTAACTTCTAGCCTTGTGGCATGCTATGTGTTCAGAGCCAAACACGATACATGTACtgtaacagagaaagagagactgtaTCATTAATTACATCATAACATTAATTACCAGCTGCCTGAGAGTACAGTAGAGCCAAAATAAGATCTTTCAGAAACACTGGAAGTGTTTCGCTTTGACACCATAAAGTGTTCAATTGTTGTTCTGAGCCCTACAAGAGTCTCCTAAAAGTATCTTTATCTTAAATAGATCATCTTAACTGgtgtagagagagtgagtgtacAGTGTGATGCTCACCTAACAATTTAAGAACAGTCTTTTGGTTGTTTAAGTTAAGATACTTTCAGGAACCTCAGTTCAGAATGATGATTCAGAATTTAGTGACCCAACAATCAACAGTAAGCAACAGCAAGCTCAGTCCTAAAGCCACAATCATGGAAGTGCCACTCAGAAGGGGCAAATAGGACATTCAGTCCAGTTCCCAAAGCTCCACTCAGCTGGAAATCCTGATCATTTACCCCATACCTCCCATCCGTCCACACAATGCTAAAAAATCATGACCTGTTGTAAATAGATATCAGTCAGTATACAGAGTAAGATGCGTTCACTAAGAAAAGTATCCAATAAGATTTCTAAGCCTGGAACACAGGCCTACTACTGGAATGTGTtgcattacttttgttttttttatagtaaaatgatggggaaaaaacaaacaaacaaacaaaataactaaaaaaaacaatgttctcaGAGATGTGTTGCAGAAGTAGTACTTTAGCACATGAAGGCCAACACTAACTCGATTGTAAATAGAGAGATTAACTTCTAAGGATTTAAAAGAAAGTGGCACACACGTAGTCTAGAAACTTGTGAAgttttttgcatatatttttgtgttcacattttcttttctcctaCTTTCTTCTCCGATCGATCACTCCTAAATGCATAGACGCAAAAATAACAAACCTCCTAACTTCCTGTAGCCTTTCCTTTTCCTTTGTGATTTCTATTGTGCATATGTGCTAGACTGCTTCCTAATGTCTATATGaagaaacaaatataaatattatctatgtgtgtgtgtctctgccaATGCCGTAATGCTCTGTATCCCACTGTAACATCCCTCTTATTAAATGCTAAGACTCCCCCTCCCCCTTCTCCTCAGTGTTACACTTATTTTATATGCTAATATttatattgctgttttattttctcttgaACACtgacatttcaaataaaaagttATGAAATCATTAA

Function

NR:

description
PREDICTED: protocadherin gamma-C5-like isoform X1

GO: NA

KEGG:

id description
K16497 PCDHGC; protocadherin gamma subfamily C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608793.2 True 6131 mRNA 0.46 5 9196453 9225559

Neighbor

gene id symbol gene type direction distance location
LOC107197946 LOC108438827 coding upstream 1938 9187244 ~ 9194515 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding upstream 21554 9171322 ~ 9174899 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding upstream 33710 9158954 ~ 9162743 (+)
LOC111193089 NA coding upstream 38055 9156733 ~ 9158398 (+)
LOC111193051 NA coding upstream 43193 9134449 ~ 9153260 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding downstream 50987 9276546 ~ 9348427 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding downstream 565712 9791271 ~ 9799463 (+)
tbc1d2 tbc1d2 coding downstream 601728 9827287 ~ 9853057 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding downstream 684847 9910406 ~ 9957528 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding downstream 748665 9974224 ~ 9977824 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding upstream 44487 9142362 ~ 9151966 (+)
G72278 NA non-coding upstream 105835 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 403277 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 711690 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 758358 8437870 ~ 8438095 (+)
G72285 NA non-coding downstream 1956 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 366748 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 372390 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 467110 9692669 ~ 9698998 (+)
G72496 NA non-coding downstream 482878 9708437 ~ 9710214 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 47034 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 160427 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2310912 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2657659 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3239434 5871090 ~ 5957019 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 742947 9968506 ~ 9970042 (+)
G72621 NA other downstream 853020 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1047360 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3645925 12871484 ~ 12897931 (+)
G73533 NA other downstream 5423270 14648829 ~ 14649551 (+)

Expression


Co-expression Network