LOC103033622 (LOC108438830)


Basic Information

Item Value
gene id LOC103033622
gene name LOC108438830
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9097379 ~ 9100230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015608816.2
agagagagagagagagagagagatgaagagaaaaaTATAAGCCGACAGTATCAGGCTTCACAGTGCAGGATCTACTCCATTTTTGAACTCCGGATGGATGAAGAATCTAcgtatatttttgttatttttgtgttggcttttaaacttatttaaatttttatttatgtaagatGTTTTTTCCAACAagatacattctttttttaaggGTGCAATGCATTAAGATGCTTGTGGTAGtgctgtctgtttgttttttttccggACGTGCACTCGGTGAAGTGCGCTACTCAGTTCCAGAAGAATTGCAGCGTGGCTCGGTAATTGGAAATCTAGCACAAGACTTGAAACTTAACGTGGATGAACTGATACGACGCAATGCACGAGTCGTGGCAGAAGGGACTCGACAGTTTTGTGAGCTGAGTACAGAGACAGGCTCTCTCTTAGTCAGTGAGCGAATGGATCGGGAAGAGCTTTGCACACAGACTGAGGTATGCATCATACAGTTTCAACTGCTCCTCGAGAACCCACTTAAAGTGTACAGCCTCGTACTGGATATACAAGATATCAATGACAACAGTCCCTTTTTTGATAATGGACAAATTGAAATGGAGCTTTTGGAGTCAACAATTCTGGGGAGACGCTTCCCACTGGAGAGCGCACAAGATCCTGATATGGGAGCTAACTCAGTTCAGCACTACCGACTTAGCGAAAACGATTATTTTGCTTTGGAAATGAACACTCAGATGAATGCAAATGCGTACCCTGAACTGGTTCTTAAAAAGCCACTGGACCGCGAAAGCCAAGTTGATCACTTCTTGACCATCAGTGGGGTGGATGGGGGTCATCCACCTCGTTCTGGTACAGCTTCTATTCACATTCATGTGCTGGACGCAAACGACAACATTccagtttttggtcaaagagtTTACAAGGCCTACATACATGAAAACTCTGACCATGGAACAGTATTGGCAAAGTTAAATGCAACGGATTTAGATAGTGGACTGTATGGTGAAATTAGCTATTCGTTTAGTCACATGCCAGACAAAACTAAAGGGGTTGTTATGATTGACCCTGTGACTGGTGAGGTGCGGGTGGCTGGGTCGATTGATTATGAAGAGGCAAGCACACATGAACTGGATGTTCAAGCCAAAGATGGAGGAGGACAGTCATCACACTGTAAACTTATTATAGAAGTGACTGACCTCAATGACAATGCACCAGTTATAGAAATCAAGTCtgcctccctctctgtctctgaggATGCTTCTCCTGGAACTATGGTTGCTTTGCTCAATGTTTACGATTTGGACACTGGAGCAAGTGGTCGAGTAATTTGTGTCATTTCAGATGATGTACCATTTAGACTTGTGTCAGAagttaaaaattactttatgcTCATTACTGATGGAGTTTTAGATCGGGAGAAGCAGTCTTACTACAACATAACAGTAACTGCAATGGATGCAGGTACACCTCCTATGTTCAGCAGTAAAGTAGTGCCTATAATGATTGGAGATGTTAATGACaatcctcctgtttttactcACAGTGAGTACACCATTCAGGTGCCCGAAAACAAAGCTCAAGGCTTCCTTGTGACAAGGGTGAGGGCTATGGATGCAGATGCCAGGCAGAATGCCCAAATACAGTACTCATTAGCAGAGGATGCAATTTCTTACTTCTCACTGAATGCAGAGACTGGAGAGATCTTTACATTACGCCCATTCGATTATGAAACATCAAGTCACTTCTGTATACGTGTAATGGCGCAGGATGGGGGGAACCCCCCATTTACAAGCACTTGTACTGTTAGGGTTTTCATTGGAGATGAAAATGACAATGCACCAGTTGTCCTTTACCCAGTTCAGTCTACTGTGCACATTGCAGATGATATAGTACCCTTGGCTGCTCCTAAAGGATATCTGGTCACTAAGGTGGTAGCTGTAGATGCAGATGCTGGACATAATGCCTGGCTGTCTTATCATATAGTAAAAGCAACACAACATAATTTATTCTCCATTGGATTACATTGTGGAGAAATCAGAACTCTCAGACCGTTTGCAGATGATGATGAACCAAAACAATTGTTGGTCATTGCAGTTAGAGATAACGGACATGAATCTTTTTCCACCACGGCCACTGTGAACATTGCCATTGGGGAGGGCCTTCCCGTTATAGATGAGCTTTCTGCCTTTGGCCTAGATGAGTCACGAGTGAGAGATgattttataatgtatttaataatcaCATTGGCTGTGGTGTCTGTTCTTTTTCTCATCCTAATCACTGTAGTTGTTTACATGAGATTTTGTAGGCGCAGCTACATGCACCGCTCCTCCACAAAGCTACCTGTTTTCCCCTCAACATATGGGCCTCCAGGCTACTTTGATGTTAGTCGGTGTGGTACGTTGCAGGACGATGATAGGTACAGTTCATTTTTAACAACAGGGTCGTGGAGAGGTGATTTTAGATTTGGGCCAGAGGTCTTTGATTATGATACTCCAAAAAAGAGTGGAACAATGCTGCATGTGATAGGAGACAAAACAGCCAATGTAAAGGTGGGACCATGTGCAAATCTTTCTGTAAGACGCtaatttcagtaaaaatattaaagatttCAGACTAAGCGAAATTAAAACATAGAATGAATAGTTTTGATAACTAAAATCCACATTCACAGAACTAATTTGTGCATTTATGTGTTCTATATTTGTCTATTCAAATTGTGTATTAttcctttaatttatttttttccagtactGCATGTGACTTTGTGCTCTATATCTATCTTAATTCTACTGCgtatgtactgtattgtatCCAATCTAAGGGGTAATTAAAAATcactctgt

Function

NR:

description
PREDICTED: protocadherin beta-15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015608816.2 True 2852 mRNA 0.41 1 9097379 9100230

Neighbor

gene id symbol gene type direction distance location
LOC107197811 NA coding upstream 3902 9092223 ~ 9093477 (+)
LOC111193080 NA coding upstream 123973 8970578 ~ 8973406 (+)
LOC103029169 LOC108430921 coding upstream 135551 8958444 ~ 8961828 (+)
LOC111193082 LOC108430922 coding upstream 167138 8927031 ~ 8930241 (+)
LOC111193084 LOC108430922 coding upstream 193285 8902284 ~ 8904094 (+)
LOC111193087 NA coding downstream 20300 9120530 ~ 9122791 (+)
LOC103033934 LOC105891230 coding downstream 27077 9127307 ~ 9130230 (+)
LOC111193051 NA coding downstream 34219 9134449 ~ 9153260 (+)
LOC111193090 LOC108438833,LOC108438834,LOC108274937 coding downstream 37557 9137787 ~ 9142082 (+)
LOC111193089 NA coding downstream 56503 9156733 ~ 9158398 (+)
G72278 NA non-coding upstream 6761 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 304203 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 612616 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 659284 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 677074 8420064 ~ 8420305 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 42132 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 127285 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 492077 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 497719 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 592439 9692669 ~ 9698998 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 61353 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2211838 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2558585 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3140360 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3418505 5672718 ~ 5678874 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 42669 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 868276 9968506 ~ 9970042 (+)
G72621 NA other downstream 978349 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1172689 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3771254 12871484 ~ 12897931 (+)

Expression


Co-expression Network