LOC103041113 (ppt2)


Basic Information

Item Value
gene id LOC103041113
gene name ppt2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 988446 ~ 1005877 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671898.1
ACGTTGGTGAATGAAACAGGAACAAGCACAGCACCCCCCGCAGATCCACAGGGAAATCAGGTTCCtagagagcagcagcagcagcggcagcggcGGGGTGATACACatctggagcagctggactgtcCGCTAACCCGCCTGCTGCACACCCTGACCAGGTCTGCCCGCTCCTGATCCCGGGCTGATAGCGGAGCTGATAGCGGGGCTGATCCGGGGCTGATAGCGGGGCTGGTAGCGGATCGTACCCGGAGGAGAGATGAGGGAGACGGGGCTGCTGGTCTGCCTGCTCGCCTCCTGCCTGCTGGCCGCGGTTGTTCTCTCCCACAGACCGGTCATCATAGTGCACGGGCTCTTCGACAGCTCCTCCGACTTCATCACCCTCAGCCGCTTCATCAACCAGTCTCATCCAGGGACGAACGTGACGGTTATAGATCTGTTTGACCGCAGTGCCAGCCTACAGCCGCTATGGAAGCAGGTGGAGGGCTTCAAGGAGGCCATCTATCCCATAATGCAAAACGCGGCCGATGGAGTGCACCTGATCTGCTACTCTCAAGgagGACTGGTGTGTAGAGGAATCCTGTCCACTCTTCCCGACCACAACGTTCACTCCTTCATCTCACTCTCCTCACCTCAGGCTGGACAATACGGAGACACGGATTATCTGAAGTACCTCTTCCCCACGTTCCTCAAGTCCAACCTTTATCTAATCTGCTACACTGCTGTGGGCCAGAGAGTCTCCATCTGCAACTACTGGAACGatCCTCACCACAGAGACCTGTACCTGAACAGCAGCGACTATTTGGCTTTACTGAACAACGAGAGGCCAAATCCCAACTGCACAGGTAATCCTGTcctaacatttattaaaaatggttatATCGGCCACCCCTACTGCAGATTAATGAATGGAGatgcttttttttacactttgcaGGTGTTCCTGAGGGACTCGTTTGGGTTGAAGACTCTGTACAGTAGAGGAGATCTGGTGATGTGTTCAGTTCCGGGTGTGGAGCATGTGTACTGGCACTCCAACGAAACCGTCTACAAGACCTGCATCGAGAAGTGGTTGACATAGAAATGCGCAAAAAAATGACACAGAGAAACTATTTTTACAGATGAGATCAATATCGGTCAGTTTTTTATCATTAACGGCGGTTTGTTACAGTACAGTGTTGCTGATTCAGCGCAGCACTGCAGTGCTTTTATACTCCTGCGTGaggccctctctctctctctctctctttctctcaccagCGCTTTACATTTCTTCACTCATGCAtgttcatttttactgtattttatgaggtatagatatatatatatatatatatatatgtagagagagagagagatgtataaATGAGGCTGACTGGCTAAAGGGAGTGTCAGTCACAAGCACACCATAGTTGTGCACATCAGTGCCTGGAGGATATTTCTGTCCGTCTCtaaacacagaacacagttAACCCAGAAAGGGATGGAGATAACggctgttttaaacattttag

Function

symbol description
ppt2 Enables palmitoyl hydrolase activity. Predicted to be involved in fatty-acyl-CoA biosynthetic process. Located in intracellular membrane-bounded organelle.

NR:

description
Zgc:174932 protein

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671898.1 True 1511 mRNA 0.50 6 988446 1005877

Neighbor

gene id symbol gene type direction distance location
rps5 rps5 coding downstream 5843 975095 ~ 982603 (-)
LOC111193040 NA coding downstream 50262 932017 ~ 938184 (-)
LOC103044579 NA coding downstream 792163 178319 ~ 196283 (-)
LOC103026956 ctnna1 coding upstream 992279 1998156 ~ 2220364 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding upstream 1429803 2435680 ~ 2488996 (-)
LOC103022920 NA coding upstream 1495111 2500988 ~ 2535981 (-)
dctn4 dctn4,LOC107749746 coding upstream 1655634 2661511 ~ 2678905 (-)
anxa6 anxa6,LOC107750364,LOC107594885 coding upstream 1758268 2764145 ~ 2816535 (-)
G70477 NA non-coding downstream 74197 913078 ~ 914249 (-)
G70457 NA non-coding downstream 134841 845038 ~ 853605 (-)
G70455 NA non-coding downstream 148292 836229 ~ 840154 (-)
G70454 NA non-coding downstream 159890 826913 ~ 828556 (-)
G70443 NA non-coding downstream 206753 780327 ~ 781693 (-)
G70489 NA non-coding upstream 14858 1020735 ~ 1020992 (-)
G70502 NA non-coding upstream 81966 1087843 ~ 1088144 (-)
G70508 NA non-coding upstream 110050 1115927 ~ 1117269 (-)
G70512 NA non-coding upstream 139906 1145783 ~ 1146014 (-)
G70515 NA non-coding upstream 158326 1164203 ~ 1164470 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other upstream 4009 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 1698318 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 2274279 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 2438218 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 2569684 3575561 ~ 3703751 (-)

Expression


Co-expression Network