gpx3 (LOC108415088)


Basic Information

Item Value
gene id gpx3
gene name LOC108415088
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2690738 ~ 2701134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671900.1
CTTCTGCAGGTATGTAATAAAGACGTGGACGGCTCCATATACGACTATGGAGCGAACACTATAAACGGAAGTGTGCACATCCCTCTGCGGCAGTACGCCGGGAAATACGTCCTCATCCTGAATGTGGCGACCTTCTGAGGACTCACCTTCCAGTATGTGGAACTGAATGCACTACATGACGAGCTGAAGCACATGGGGTTCACTATTCTCGGCTTTCCCTGCAACCAGTTCGGGAAACAGGAGCCTGGGGCCAATTATGAAATCCTGCCTGCATTAAAGTACGTCCGCCCAGGCAACGGGTTCGTTCCAAATTTCCAGCTGTTTGAAAGAGGTGATGTGAACGGAGACCATGAGCAAGCCCTTTTCACCTTCCTGAAGAATGCCTGTCCACCTGTGGGCGACAGCTTTGGAAACCCCAACGAAAGGCTGTTCTGGGATCCGCTGAGGGTCAACGACATTAAGTGGAACTTCGAGAAGTTTCTGGTGGGGCCGGACGGGAAGCCGCTGAGGAGGTGGTTTCCGAGGGTGAACATTTCCGAAGTGCGATCCGACATCATTCGCCTGATTCGTCAGCAGTATTCCCAGCACTAATCGACTCCAGAATCTATATAGacaaggtaccactttaaaataaggctcctttataaatagtttacgaaggagtttataaatagttattaatcaagttgcaaatactttaaaaacattactaAACAATCGATAAACACAAATAGATAAAAGAACAGTAACAATGacctttttaacatatttaataaaataatatataacctCCTGAGACCCGAACATTTTCTTGAtgtgcatttttaatgtattatatctATGTGGAATCTGTAGGACCGAATAAgtattaaaaactaaactttgtctttgtacagaaatagtttttttgcaaaaaacattgCCCTAATATAGAGAgaacagtttattttaacatttaaaaatgatccttGCAATTTGGGATCAGAAGAACCCAATTAgtacaaaaaactaaattttagctttctacagtaagtaaataaattagcTTCAAAcgtaaaattgaaaaataatttttaccTGGCTCATGTTTctctctggactggctgtagaaacatgtgactgggattcccaccatcttatttttaatcaattgagaGTAATGTTGTCATGCGACCACCAAATGGTTAAAAAAGTGTAGAATTATGatgcagaaatgcagaaatgtaatgtaaatgtaaagggtctcaagaggataaaGTCAATTTAGtcctttaatatgtttttttatagctaaaaaaataaagttattaactgAACTGAAGTTAATGATAACTGGtggaaaagaaaaagtaagataAGTATCTTTTAgtagtaagatctgaggtttaacagtataaattataaatgaatgtataaAGGAATCACTATTCGATACATGAGAGGccactgttgccttttctatttatgtgttgtagctgtgtattaatggtttataacctaattaataacctgtaataaactccttcataaactgtttataaaccatttataaagaagccttattttaaagtggtaccatagaaaaaaataaagacaaatccTGTCCTGTGTGTCTGTTGAGTTTGGTTAGCAAGCGGTCCactgtgccaaaaaaaaaaaaaaacgcaaggGGGGAAAAACAAGTGTAAACTACAGAATAATTGATATTATGAGGTTAATTAtggttaatattaatatttttaccatattgtaGATGTATTTACATCATTGTTCTTCACGTCCAGTCCTGAAGGACCACAGTACTGAGCAGTTGAGGGTCCAGTTCAATCATTCCAAACCCGAGCGCACCCAAAACTATTAAGGTCTGCTCGGGTGAGGATGTTCCCTCTACTGTCCAGAAGCTGCCCCTCCAGGACTGGCCGTGTGGAGGAGACTGAGCGGAGAAGTCGAGGTGGAGATCTCACGCCGGCAGGGCTGTGCTGGTGCTGGATACGGAGGTGTGGCGTCTGGATGAAGGTCAGGTTTGAAAGCAGACCCTCTGCAAAGCCTGACTAGAAGCTTGGGGCCAGAGAGGTTCTTCAGTGCATTCAGGCCGCTCTGCTGCTTCCATTAAGCCACGCCCATTCTCCTGACCCGCCCACCCAGCCCTGCTCCGGCCCTGTGTGTGATCTTTATGATTTTATCCATACAATAAAGCTTTCAGTGCAAGA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: glutathione peroxidase 3

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004602 glutathione peroxidase activity molecular_function

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671900.1 True 2210 mRNA 0.40 4 2690738 2701134

Neighbor

gene id symbol gene type direction distance location
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding upstream 1717895 957420 ~ 972843 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding upstream 1778216 899894 ~ 912522 (+)
LOC103042240 LOC103042240 coding upstream 1813334 867909 ~ 877404 (+)
LOC103036550 NA coding upstream 1912732 640691 ~ 778006 (+)
LOC111193065 NA coding upstream 2280516 404610 ~ 410222 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding downstream 127275 2828409 ~ 2854104 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding downstream 156761 2857895 ~ 2866216 (+)
LOC103025421 n4bp3 coding downstream 170442 2871576 ~ 2946729 (+)
LOC103047122 LOC108439803 coding downstream 357390 3058524 ~ 3081939 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding downstream 394750 3095884 ~ 3113634 (+)
G70642 NA non-coding upstream 28134 2626162 ~ 2662604 (+)
G70623 NA non-coding upstream 153403 2535466 ~ 2537335 (+)
G70618 NA non-coding upstream 186433 2498649 ~ 2504305 (+)
G70608 NA non-coding upstream 254660 2434979 ~ 2436078 (+)
G70611 NA non-coding upstream 286806 2403414 ~ 2403932 (+)
G70660 NA non-coding downstream 56009 2757143 ~ 2757834 (+)
G70676 NA non-coding downstream 62210 2763344 ~ 2763639 (+)
G70678 NA non-coding downstream 62904 2764038 ~ 2780403 (+)
G70680 NA non-coding downstream 71479 2772613 ~ 2775571 (+)
G70697 NA non-coding downstream 148825 2849959 ~ 2850374 (+)
G70604 LOC108436838 other upstream 331509 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 497179 2088920 ~ 2193559 (+)
G70522 NA other upstream 1421334 1268767 ~ 1269404 (+)
G70385 NA other upstream 1684900 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 1835580 845025 ~ 855158 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 420784 3121918 ~ 3292475 (+)
G70846 NA other downstream 676550 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 708536 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 1655931 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 2214679 4915813 ~ 4921820 (+)

Expression


Co-expression Network