LOC111193047 (LOC108430978)


Basic Information

Item Value
gene id LOC111193047
gene name LOC108430978
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7567400 ~ 7588582 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671906.1
ATGGCTCTGACCGAGACCTGCAGACTCTACCAGTCTCCTAAAGACGTCGGCGGCTCGGCGCATGGAGCTTCGGACGTCATCGAGCTGAACGTGGGCGGCCAGGTGTACTACACGCGGCGCGCGACCCTCGCGGCCTTCCCGGACTCCGTGCTGGGCCAGATgttctccagcgcggccggcgaGCTGGCGAGAGATGCGCGCGGCCGCTGCTTCATCGACCGGGACGGGTTTCTGTTCCGCTACGTGCTGGACTACCTGCGCGACCGGCGCGTGGTGCTGCCCGAGCGCTTTCCGGAGCGCGCGAGACTCCGCCGCGAGGCCGAGCACTTTCGCCTGCACGAGCTGGCGGGCATCCTCGCGTCGGTGGAGGACGAGGCGGACGAGGGCGGCGGGGGCGGCAGGGGGGTCCCGGACGACGCGTCCCCGTCCAGCGAGAGGACAGCGCGCGACGGCGCGTGCGGCTTCCTAACTGTGGCGTGCAAGGGCGCGCGCGTGGGGGAAGCGCCGGCGCCGAGGATCTCGGTGTGCGGGCGCGTGGGGCTCGCGCGCCAGTGTATTGGCAGGGCAAAGCGTAGCACGCGGTGCCAGCACTCATCAGGCAGCAGCATCAAAGTCACTCTCAGCAGCCCGGCTTTAACGAGCCGAGAGCATTACGCTGGCTGCTCATCGCTCATCGTTCCCACTTTCTCCAGCAGCCTGGCGGATCGCTCTCCTGGTGGGGTCGCGTAG

Function

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671906.1 True 729 mRNA 0.69 2 7567400 7588582

Neighbor

gene id symbol gene type direction distance location
LOC103030823 LOC108430979 coding downstream 80762 7446578 ~ 7486638 (-)
kif3a kif3a coding downstream 122527 7424683 ~ 7444873 (-)
LOC103022894 drd1a,LOC108430983,LOC108274482,LOC107553333,LOC107677717,LOC107598377 coding downstream 301479 7260981 ~ 7265921 (-)
LOC103024994 stc2a,stc2,LOC108430941,LOC108274458,LOC107677705 coding downstream 560466 6985218 ~ 7006934 (-)
LOC103025318 LOC108430942 coding downstream 611207 6949576 ~ 6956193 (-)
LOC103026574 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889 coding upstream 87705 7676287 ~ 7685366 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding upstream 101603 7690185 ~ 7696908 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding upstream 111308 7699890 ~ 7719056 (-)
med12 med12,LOC106604460 coding upstream 138036 7726618 ~ 7768361 (-)
enox2 enox2 coding upstream 278619 7867201 ~ 8174894 (-)
G71914 NA non-coding downstream 45659 7521532 ~ 7521741 (-)
G71911 NA non-coding downstream 68917 7497781 ~ 7498483 (-)
G71900 NA non-coding downstream 223966 7343234 ~ 7343434 (-)
LOC111193041 NA non-coding downstream 265092 7301826 ~ 7302308 (-)
G71845 NA non-coding downstream 385948 7165132 ~ 7181452 (-)
G71975 NA non-coding upstream 68080 7656662 ~ 7666552 (-)
G72022 NA non-coding upstream 290097 7878679 ~ 7879316 (-)
G72023 NA non-coding upstream 336812 7925394 ~ 7929086 (-)
G72118 NA non-coding upstream 728069 8316651 ~ 8316977 (-)
G72312 NA non-coding upstream 787505 8376087 ~ 8376585 (-)
G71862 NA other downstream 254474 7309775 ~ 7312926 (-)
G71826 NA other downstream 509757 7057110 ~ 7057643 (-)
G71771 NA other downstream 742644 6777239 ~ 6824756 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 1725693 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 2091025 5471666 ~ 5476375 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 185313 7773895 ~ 7842280 (-)
G72336 NA other upstream 1050956 8639538 ~ 8645601 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 1577296 9165878 ~ 9174309 (-)
G72453 NA other upstream 1599817 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 2212473 9801055 ~ 9824519 (-)

Expression


Co-expression Network