LOC111193051


Basic Information

Item Value
gene id LOC111193051
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9134449 ~ 9153260 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671909.1
GTTTGCCTGTTGTTTTTCAATacttacatgtttttatttgtaataatgagTTTTCTTTGTCTGAATAGTTTTTTACCCCAAGGAACCTTTCTCAGACATGATGTTTGTATAGATTTGTGTAGTTCTTAACGGCTTTTTGAATTTTTAGTTTCTTAGTGCTCCCATtaatttttaaccactcatttGTCCTACTTTTCATTACATTGTTCCTCTCACACACAAATGAATTTGCATCTGTGTGTAGTTCTTCAAGTTGGACTCACAGTGCCGCTGTTGGTCAGCGTGTTAGAGCATGGAGGTCTAGTTTGAGCAGAGCCTCCCCCACATAATGgaaataagagagagacagagcttcTCAGACGCACTTCAGTAATAAAGAGTGCACGAAACGTCTCGCGGATAAAGAGGCCAGcgttatattatactatactttcatcatcattatcttggaattttttttttttttgagctggaTTGCTATTTTTTGGATTAACCATTTATATAATTGAGCATATCGACTTTGTTTTGTTATGGCAATCCACAAAATGACGGAGAGAACAATAGCGCGGCAAGTactgctgtttgtgtgttttttctctttcagtccAGTGCGCGGGCAGGTCAGTTACTCCATTCCTGAGGAAATGCCGAAAGGATCATTAGTCGGTAACATAGCGCAGGATTTGGGTTTAGATGTAAAGCGTCTAAAATCAGGTAAAGCTCGTGTGTTTAGCGGCGACACTACTGAATACATAGAGCTTAATAAGGAGAGGGGGGTGCTGCTGATCAAAAAGAAAATAGACCGAGAAACGCTATGCAAACAAGCCTCACCTTGCGCTCTACATTTACAAATAATTCTTGAAACCCCAATTGAGCTGTACCGCATTACTGTCGAAGTCACAGACATCAATGACAATGCGCCCAGTTTTATCAGGACGAGAAGCGCTTTGAGATCAGTGAATCTGCTGTTGTTGGTTCAAAATTCGTATTAGAAAAAGCAGTGGATGCAGATATTGGAAAAAACGGTCTACAAAGTTATATTTTATCATCGACTGATTGTTTTAATCTGAAAATCGGTACTCAGGCCGACGGAAGCAAAACAGTAGAAATGGTTTTGCAAAAACCATTAGAtcgagaaaaacaagaaaacatgtCACTCTTATTAACAGCAATCGATGGGGGAGAACCGGTGATGTCAGGAACCGTACAAATACACATCACTGTGCTTGATGTCAACGATAATGCTCCTGTTTTTACGAAGCCATTATATAAAGCTGTGATAACTGAAAATGCACCAAAAGGCACTTCAATACTAACCGTTAATGCCACTGATCAAGACAAAGGCTCAAATGGCCACGTAGGTTATACAATTTCCAGTAACATAAACAGATTGTCTGAGATGTTTCATGTAGACGAACAGGGCGTGGTGACGTTAGTTGGAGACATCGACTATGAAACCGCCAAGCATTACCAAATAGATATAGAGGCTACTGATAATGGCGGACTTTCGGATTCTAGTAAAATAATGTTAGACGTTATTGACGTAAATGATAATAAACCACTCATCACTTTGATGTCAAAATCCTCTAGTATACTTGAAGACTCACGGCCAGACACGGTGATAGCTATTATAAGTGTATCTGATCCTGATTCCGACAGCAATGGCCATGTCCACTGTAGAATAAGTGAAAGGATTCCTTTCACAATTGCGTCTACGTCCAGCGACTTTTATAGTATTGTCACAGATAGTGATCTAGATCGAGAAAGAGAGTCTGGGTATAATATCAGTGTGATGTGCTCTGATGAGGGGTCTCCGTCTCTCTCCAGCAGCGTCACTCTCACCTTACAGATATCAGACGTTAATGATAACGCTCCTGTTTTTGAGAGGAGCTCATATGAGGCCTCCATTTCAGAAAATAACACACCAGGTCTCTCCATATTCACAGTCAAAGCCAGAGACGCAGACTGGAACCAGAATGCGCGTGTTTCTTACATACTACAGGACTCGTCCGTTAACGGAGTTTCCGTCTCCTCTTACGTATCGGTCAGTGCTGATACTGGCGTTATCCACGCAGTGCGTTCTTTTGATTACGAGCAGATCAAGGATTTTAATTTCCGAGTAATAGCTCAAGATGGAGGCACCCCTCCTCTCAGCAGCAATGTGAGTGTGAAGATAGTGATTCAGGACCAGAACGATAACGCGCCTCAGGTTCTGTATCCATTGCAGACTGGTGGCTCTGTGGTGGCTGAAATTGTGCCTCGTTCAGCAGAGGTGGGCTATCTCGTGACCAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCATATAAACTGCAGAAAGCTACAGACAGGGCGCTGTTTGAAGTGGGATTACAGAATGGAGAAATAAGAACTGTGCGCCAGGTGACCGATAAAAGATACTTAACAATTTTGCACTCTGTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671909.1 True 2458 mRNA 0.42 3 9134449 9153260

Neighbor

gene id symbol gene type direction distance location
LOC103033934 LOC105891230 coding upstream 4219 9127307 ~ 9130230 (+)
LOC111193087 NA coding upstream 11658 9120530 ~ 9122791 (+)
LOC103033622 LOC108438830 coding upstream 34219 9097379 ~ 9100230 (+)
LOC107197811 NA coding upstream 40972 9092223 ~ 9093477 (+)
LOC111193080 NA coding upstream 161043 8970578 ~ 8973406 (+)
LOC111193089 NA coding downstream 3473 9156733 ~ 9158398 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding downstream 5694 9158954 ~ 9162743 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding downstream 18062 9171322 ~ 9174899 (+)
LOC107197946 LOC108438827 coding downstream 33984 9187244 ~ 9194515 (+)
LOC111188173 LOC108438827 coding downstream 43193 9196453 ~ 9225559 (+)
G72278 NA non-coding upstream 43831 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 341273 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 649686 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 696354 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 714144 8420064 ~ 8420305 (+)
G72285 NA non-coding downstream 74255 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 439047 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 444689 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 539409 9692669 ~ 9698998 (+)
G72496 NA non-coding downstream 555177 9708437 ~ 9710214 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 98423 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2248908 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2595655 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3177430 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3455575 5672718 ~ 5678874 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 815246 9968506 ~ 9970042 (+)
G72621 NA other downstream 925319 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1119659 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3718224 12871484 ~ 12897931 (+)
G73533 NA other downstream 5495569 14648829 ~ 14649551 (+)

Expression


Co-expression Network