LOC111193054


Basic Information

Item Value
gene id LOC111193054
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 12343475 ~ 12348986 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671914.1
ATGACgCTCCTCTCCCGTAAGCCCAAAGCTGTTAGCCACACTCCTGCGGTTCGCCCTGCCACTACTTCAGTTCCGGGAATTCCAGTTCCGGAATTTGCGCCTGCACCCAGCCCTGAGCCCATGACATCACACGATCCAGACTATCCGTCGCTGAGAGGCAGCGTCGCATACGCCTTCACCTGTGCCTCTATTGTGGATGattctgggtcggaggggaactttATCAGCCTGGATTGGTGGAGGAGCACGCCATACCCACGAAAGTTCTCCCCAAGTCGATCTCCATCCATGCCATCGATGGAGAGACTGTACGCTCCAAAACCTGTTGACCCTGCAGACTCTTCCTCTCACCCTTCAAGCCAGCGCTCTACATGTGgaacagctctctctctatgtgctcCCACGCACAGAACATCCACTGGTTTTGGGAGCGCCATGGCTAAAGACACACGACCCCGTCATTTCATGGAGCCTGGGAGACATCACTGCCTGGTCTCCTTTCTGTCCCTATGGTCCCGGGTCCGCTCGCTGACGCTGCACCGGCTGATGTTCCACCCGCGGctgtggagggggaggggtCGTCCACGTATGCTGTCCGGGAGGTGCTGGATTCACGCAGACGTGGGGTGTGCTCCAATACCTTATCGATTGGGAGGGGTATGGTCCGGAGGAGCGTTGTTGGGTGGCTGCCAAAGACGTGCTGGACCCTGCCTTGCTCGTGGAGTTTCATGCGCTGTTTTCCtggtaagcctgctcctaggccCCGTGGACGTCCCAAGCGTCCTCCGACCTCCTCTGCTCCAACTCGTCGGGTTTCTCGCTCTGGTGAGCCCCGTCTGTCTGGCACCTCCGCTCCGACACCTGCacctcccgccggtactccctgtcCGCCGGGTGGTCGTCGCCGGGGTCGGCCCCGTTCTGCCTCCGCTCGTGCCTCAGGGGGAGGGATTTGATCTTAACAAAAGGATGAAACTTCTAGAGCTCTCCAAACTGAGGTTCTGCGCTGTCGTTTCCAAGGTGACAGATACGAAGGAACGGTCGTCAGATCCTTGCCCATCTGGGCCAAGTGTGGCTATCCGCCCAAGCTCAGAGGACACTGAGTTCAGCTGTGTAATTTAG

Function

GO:

id name namespace
GO:0043543 protein acylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671914.1 True 1122 mRNA 0.59 5 12343475 12348986

Neighbor

gene id symbol gene type direction distance location
LOC103035544 LOC107742058,LOC107675302,LOC107595230,LOC107758756,LOC107549283,LOC108275297,LOC107675455 coding downstream 302413 12036675 ~ 12041062 (-)
LOC103034366 tnni2,LOC103034366,LOC108428827,LOC107742057 coding downstream 307428 12033289 ~ 12036047 (-)
LOC103031193 LOC108428829 coding downstream 347274 11957570 ~ 11996201 (-)
LOC103031503 tnnt3b,LOC108428830,LOC108275000 coding downstream 389686 11944425 ~ 11953789 (-)
ush1c ush1c,LOC107675293,LOC106561052 coding downstream 508735 11805817 ~ 11834740 (-)
LOC103038241 kras,rask,LOC105900436,LOC103038241,LOC107675271,LOC108428819,LOC108274959 coding upstream 96690 12445676 ~ 12456034 (-)
LOC103039697 NA coding upstream 136660 12485646 ~ 12489180 (-)
polg polg,LOC107557431 coding upstream 238253 12587239 ~ 12602241 (-)
rhcg rhcg coding upstream 289885 12638871 ~ 12651916 (-)
gdpgp1 NA coding upstream 309907 12658893 ~ 12661807 (-)
G73098 NA non-coding downstream 146897 12194573 ~ 12196578 (-)
G73030 NA non-coding downstream 216652 12125536 ~ 12126823 (-)
G72974 NA non-coding downstream 608629 11734144 ~ 11734846 (-)
G72967 mob2,LOC108411394,LOC108274974 non-coding downstream 610326 11694678 ~ 11733149 (-)
G72881 NA non-coding downstream 1111797 11231179 ~ 11231678 (-)
G73119 LOC108428815,LOC108428741 non-coding upstream 153877 12502863 ~ 12539230 (-)
G73125 NA non-coding upstream 161055 12510041 ~ 12510921 (-)
G73159 fanci,LOC107670230 non-coding upstream 224325 12573311 ~ 12574584 (-)
G73162 fanci non-coding upstream 229872 12578858 ~ 12582454 (-)
G73173 NA non-coding upstream 264620 12613606 ~ 12620513 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 291986 12048626 ~ 12051489 (-)
LOC111193052 NA other downstream 798229 11520887 ~ 11545246 (-)
LOC111193093 NA other downstream 1117521 11224779 ~ 11225954 (-)
LOC103046452 rassf7 other downstream 2180991 10101773 ~ 10162484 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other downstream 2289441 10051952 ~ 10054034 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other upstream 199704 12548690 ~ 12564978 (-)
G73172 NA other upstream 261848 12610834 ~ 12621356 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other upstream 2193210 14542196 ~ 14545536 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other upstream 2360072 14709058 ~ 14797283 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 2774828 15123814 ~ 15214284 (-)

Expression


Co-expression Network