cd44 (LOC106561308,LOC106573350)


Basic Information

Item Value
gene id cd44
gene name LOC106561308,LOC106573350
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13794413 ~ 13828422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671916.1
acgcacacacacaccactgaaaAGTTAGAGCAAAGTCTCTCCGCTCCAACAGGCGACAGCCGCTAACTGCAACTCCCCTGCTCCCAGGGCACTGGACTTAGcctacctctctcactctctctttcactccctctctctctctctctctctctctctctctctctcagcctctcATTCAATCCAAATCTCAGCACCCTCAGCTGTCAGAGAAGAGCCAGAGGAGTAGAGGAGAGCCCCTCCAGCACGGTTTGTCTCCCTCGCTCTGCCACTACTGTCTACACTCTTAGCCAGCACTGTCTACActctcagccagcatgtggATTGTGTTCTGCCTTGGACTCACCTTTGGATTACTGGCCTCCTCCTGGGCGAGCCCCACTCAAGtTGCGAAGGTGAAGAGCTGTAGTCACAAGGGGGTATTCtatgttcagggtgatgagcgtCACTCTTTGAATTTTACTGAAGCCGAGGAGCTGTGCAAGGTTTTGGGTGCAACACTGGCCAGTGCTGAACAACTGAATGCTTCTCACGCCACTGGCCTGGAGATGTGCAGGTATGCCTGGATCAGTAATGGAGACATCGCCATTGTTCGCCAGAAATCAAACCCCTTGTGTAGAGCTGGCCTTACTGGAGTTATCGTTTTCAAACCTACGGACCCTGGGTACGATGCCTTCTGCTACGACAACACAGACGatgataaaaactgtaacaataCAGTGAACCctggtgctgctgctgatcCTGTACCTAAACCAGAAGATCCAAGTGATGCTACACCTACAACTGAAGATCCAGATGATTTCTATACTGATGGCCCTGAAATGATCCCCACTGCCCACCCACCTGTAAGTGCTCACAATGAGACAGATGCAGATGAAGATGTTGAGACCACACAGTCTACTGTACTGGAGACCACTGAGCCTGCTGGAAACACTGAAGTCCAGAGCACAGCGAGCTTTGCTCAGCCTGAGCCCCAAACACAGCAGACCACAGAGGAGGATGAAGCTGAAAAGAAGATCACCACCAGAGTGCTGTACAGGACACCCCAGGCTCAGGCATGGGGGAAAACACACATGGAAACCCTGGATCACACTGAATACACACAGAGCACATCACAGCACCCTGCCGCCACAGAGGAGACCACCCAGAGTCAAACTACACCAGTCTCTGAAGATGGCTATGCTGGATCAGTGGCTCCAGGTGTGGGTGGGAGAATGCTGAATTCACCAGAAGATGACAAGCCAAACAGCGGATCTTCAGATTGGCTGATTGTTGTGGGCGTGATTGTGGCTGTTGCTGCCATTCTTctggtttgtgctgctgtggcAACAAGGAAAAGGTGGTGTGGAAAGCGTCAGACTCTGATGATCACCTCGAAGAGCAGCAGCGAGGGGAACGGGGCAGCAGCTTCAGTGGCCAGCTCTCGCGCCCAGGAGCGAGAGCAGGAGATGGTCACGCTCATGAACAAAGAGAAGATCCAGGAGAACGGCAACACCGAGGAGTTCACTGTCATCACTCTGGAGGAGTCGCCAGAGAAGAACCAAGAAgcatgagaaagagagggagatatagacagaaagagtgaaatagagagagagagagagagagagagagagagagagagagagaaagaggcagggTGTGAGAGATGGAGGGTATGGTTTAAATAAAGAGAAGCTGGTAGCTGGTTGGTTTTGCACATTGGTAGACTGGCCTGGGAAGCAAATGGACACTCTGGTAGTGCTGGTGTGATGGGAGTGGGAGTGTCTGCAAAGATGGggccagtgtttttctttagttttttttttgtctttttgtatgtgattattaattaatgacATTTTCTATTCTAGAACTGTGCTGTTTTTTCCCCCTGTGACAAAAGGGATAGATCAACAATGGCGTCAATTTGTTTGAATGTCaggcaaaaagagaaaaa

Function

NR:

description
PREDICTED: CD44 antigen-like

GO: NA

KEGG:

id description
K06256 CD44; CD44 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671916.1 True 1939 mRNA 0.50 9 13794413 13828422

Neighbor

gene id symbol gene type direction distance location
pdhx pdhx coding upstream 29363 13694428 ~ 13765050 (+)
ehf ehf coding upstream 117337 13662809 ~ 13677076 (+)
rag1 rag1,LOC107750737,LOC107670202 coding upstream 851451 12934452 ~ 12942962 (+)
LOC103044030 LOC103044030,LOC108428802,LOC108428756 coding upstream 885352 12897785 ~ 12909061 (+)
man2a2 man2a2,LOC107750719,LOC107720774,LOC107670215 coding upstream 1078755 12680106 ~ 12715658 (+)
fjx1 NA coding downstream 180210 14008632 ~ 14011720 (+)
trim44 trim44,LOC107716865 coding downstream 249590 14078012 ~ 14161299 (+)
ldlrad3 ldlrad3,LOC106573355 coding downstream 409617 14238039 ~ 14389321 (+)
rccd1 NA coding downstream 718375 14546797 ~ 14550920 (+)
LOC103025904 metap2,metap2b,LOC108428789,LOC108275287,LOC107569354,LOC107701059 coding downstream 727598 14556020 ~ 14562537 (+)
G73361 NA non-coding upstream 255 13791330 ~ 13794158 (+)
G73354 NA non-coding upstream 26053 13768125 ~ 13768360 (+)
G73337 NA non-coding upstream 156711 13637016 ~ 13637702 (+)
G73332 NA non-coding upstream 284175 13509756 ~ 13510238 (+)
G73301 NA non-coding upstream 556201 13237960 ~ 13238212 (+)
G73359 NA non-coding downstream 297 13828719 ~ 13830765 (+)
G73404 NA non-coding downstream 94179 13922601 ~ 13923296 (+)
G73416 NA non-coding downstream 174650 14003072 ~ 14003426 (+)
G73417 NA non-coding downstream 176231 14004653 ~ 14005224 (+)
G73419 NA non-coding downstream 178400 14006822 ~ 14007135 (+)
LOC103043719 NA other upstream 896482 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 3167449 10272919 ~ 10626964 (+)
G72621 NA other upstream 3712273 10078579 ~ 10082140 (+)
LOC103043718 LOC103043718,LOC108442465 other upstream 3824371 9968506 ~ 9970042 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 4644994 9142899 ~ 9149419 (+)
G73533 NA other downstream 820407 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 1063112 14891534 ~ 14921003 (+)
svip svip other downstream 1743880 15572302 ~ 15577533 (+)
G74169 NA other downstream 2458254 16286676 ~ 16288329 (+)
G74649 NA other downstream 4626429 18454851 ~ 18455197 (+)

Expression


Co-expression Network