LOC111193056 (rsph3,LOC107580271)


Basic Information

Item Value
gene id LOC111193056
gene name rsph3,LOC107580271
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15355735 ~ 15357894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671918.1
tGTGGCTTAGAGCTGTACTTGGAGGAGCTGAGTGATCATCCTGAAGATGCCAGTGTGGGATGTCAGACTGATGCATTCCTAGACAAACCAGCCACTCCTCTCTTTATCCCTGCCAAGTCTGGAAAAGATGTAGCCACACAAATAGAAGAAGGAGAGCTGTTTCACTTTGACACAGAGGTGCAGCCTGTGTTAGAGGTGCTGATAGGAAAGACCATGGAACAGGCTCTGCTGGAAGTTTTGGAAGAGGAAGAGCTGGCGTCTCTTAGGGCTCAACAGCGCGCTTTCCAGGAGCTGCGTAATGCTGAACTTGTGGAGGTACAGCGACTGGAGGAACAGGAGAGGCGCCACAGAGAGGAGAAGGTTCGCAGACTTAAGCAGCAGAGAGAAGTCTtggagaatgagagagtgatagCAGAGAAAATAGCAGCTAGAGGATTTGCTCAGCAATACCTGGCTGACCTGCTGCCCTCCGTCTACAACACTCTGAGAGAACAGGGCTATTTCTACGACCCAGTGCAGAGAGATATAGAGACAGGATTCCTCCCCTGGCTGATGGCAGAAGTGGACAATGCTTTGGAGAAACGAGAGATTGCCCTTACAGTGCTTGACACTCTCATCTATGATGTGGCCAACAGCAGACAGGAGACTTGGAAAGACCCTCTTCCCCTGTTGGTCACGCCTGAGATATGATTTGAGTAACCAGCACCTCAAAgctgtaaataaaacattgtgtgATATCA

Function

symbol description
rsph3 Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 32. Orthologous to human RSPH3 (radial spoke head 3).

NR:

description
PREDICTED: radial spoke head protein 3 homolog

GO: NA

KEGG:

id description
K23965 RSPH3; radial spoke head protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671918.1 True 740 mRNA 0.49 6 15355735 15357894

Neighbor

gene id symbol gene type direction distance location
lrrk2 lrrk2 coding upstream 4391 15308529 ~ 15351344 (+)
irx5 LOC108428750 coding upstream 274712 15075459 ~ 15081023 (+)
hsd17b2 NA coding upstream 532401 14814804 ~ 14823334 (+)
LOC103031298 gpia,gpi,LOC108428767,LOC108274969,LOC107679975 coding upstream 543237 14801718 ~ 14812498 (+)
LOC103031607 LOC108274970,LOC108428766 coding upstream 558502 14788767 ~ 14797233 (+)
LOC103041261 clpx,LOC108442679 coding downstream 4874 15362768 ~ 15380544 (+)
LOC103040017 LOC103040017,LOC108442681,LOC108274534,LOC105913127,LOC107695923,LOC107555711,LOC107723960,LOC107701590 coding downstream 45948 15403842 ~ 15418547 (+)
slc5a12 slc5a12 coding downstream 78505 15436399 ~ 15449870 (+)
fancf NA coding downstream 266934 15624828 ~ 15627708 (+)
LOC103044315 ano9,LOC108442698 coding downstream 359171 15717065 ~ 15738062 (+)
G73715 NA non-coding upstream 166349 15188895 ~ 15189386 (+)
LOC111193097 NA non-coding upstream 167780 15186249 ~ 15187955 (+)
G73710 NA non-coding upstream 228748 15123872 ~ 15126987 (+)
G73598 NA non-coding upstream 511071 14844445 ~ 14844664 (+)
G73566 NA non-coding upstream 678941 14675873 ~ 14676794 (+)
G73799 NA non-coding downstream 7749 15365643 ~ 15368383 (+)
G73798 spi1a,LOC108442687,LOC108275191,LOC107555713 non-coding downstream 24184 15382078 ~ 15383583 (+)
G73800 NA non-coding downstream 26129 15384023 ~ 15384237 (+)
G73801 NA non-coding downstream 26961 15384855 ~ 15385124 (+)
G73817 NA non-coding downstream 70854 15428748 ~ 15429645 (+)
rpgrip1l rpgrip1l other upstream 434732 14891534 ~ 14921003 (+)
G73533 NA other upstream 706184 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 2457804 12871484 ~ 12897931 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other upstream 4728771 10272919 ~ 10626964 (+)
G72621 NA other upstream 5273595 10078579 ~ 10082140 (+)
svip svip other downstream 214408 15572302 ~ 15577533 (+)
G74169 NA other downstream 928782 16286676 ~ 16288329 (+)
G74649 NA other downstream 3096957 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 3112810 18470704 ~ 18479345 (+)
G74832 NA other downstream 3724922 19082816 ~ 19085556 (+)

Expression


Co-expression Network