LOC111193057


Basic Information

Item Value
gene id LOC111193057
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15621981 ~ 15624917 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671919.1
atgacaaaaccaAGACCTTTTCCcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcacatcaGACCAGCCTCCCtctatcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcacatcaGACCAGCCTCCCtctatcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671919.1 True 1098 mRNA 0.66 2 15621981 15624917

Neighbor

gene id symbol gene type direction distance location
gas2 gas2,LOC107677431,LOC107728426 coding downstream 124 15581036 ~ 15621857 (-)
LOC103042382 LOC108442690 coding downstream 50441 15563971 ~ 15571540 (-)
ano3 ano3,LOC107677449 coding downstream 78201 15460687 ~ 15543780 (-)
fibin LOC108442682 coding downstream 187956 15431473 ~ 15434025 (-)
LOC103038669 kif21a coding downstream 331269 15228039 ~ 15290712 (-)
slc17a6 slc17a6,slc17a6a,LOC107555703,LOC107570095,LOC107677426 coding upstream 20162 15645079 ~ 15660833 (-)
LOC103041761 NA coding upstream 37085 15662002 ~ 15663287 (-)
ano5 ano5 coding upstream 41432 15666349 ~ 15710606 (-)
ccdc33 ccdc33 coding upstream 214769 15839686 ~ 15856661 (-)
islr2 islr2,LOC107662462 coding upstream 355064 15979981 ~ 15984118 (-)
G73877 svip non-coding downstream 44483 15572334 ~ 15577498 (-)
G73870 NA non-coding downstream 93519 15448674 ~ 15528462 (-)
G73869 NA non-coding downstream 167371 15449504 ~ 15454610 (-)
G73862 NA non-coding downstream 190674 15430147 ~ 15431307 (-)
LOC111193098 NA non-coding downstream 303894 15314637 ~ 15318087 (-)
G73910 NA non-coding upstream 18904 15643821 ~ 15644252 (-)
LOC111193099 NA non-coding upstream 228385 15853302 ~ 15953813 (-)
G74091 usp3,LOC107659494 non-coding upstream 478699 16103616 ~ 16108725 (-)
G74199 NA non-coding upstream 577607 16202524 ~ 16215525 (-)
G74202 LOC108433646 non-coding upstream 594179 16219096 ~ 16222273 (-)
LOC103040324 NA other downstream 207368 15381329 ~ 15414613 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other downstream 407697 15123814 ~ 15214284 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 824698 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 1076445 14542196 ~ 14545536 (-)
G73172 NA other downstream 3000625 12610834 ~ 12621356 (-)
LOC103046265 pkp3 other upstream 133386 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 842172 16467089 ~ 16470323 (-)
nrg4 NA other upstream 2252109 17877026 ~ 17885395 (-)
G74591 isl2,LOC105022634 other upstream 2357830 17982747 ~ 18029747 (-)
G74791 NA other upstream 3314257 18939174 ~ 18940464 (-)

Expression


Co-expression Network