LOC111193061


Basic Information

Item Value
gene id LOC111193061
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 24865790 ~ 24871366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671925.1
ATGGTTGTGgcctgtTATATAATTGATTCTTATAGTACAAGATTACATAATCTATTTCTTTTTGGgcctttctccctctttctttcagaAGTTAGTCCTGCTCCCACCCCTGCAAGTATTAACAAAAAGGCAAAGTCTCGGGTGCTGGATAAGGAAAGCAGGAACAGAAACCGGCTTAGCCACACTTCAGCCCCTCTCTTCCTCAACAAGGTCAAGAAACCCCCTCAGCCTCCTGACATGGACACCAGCAACCGCCTGCCTGGGGGTCAGCAACCCCTGCCTCGTAGACAACGCAGCATACACACAGAAGGTGGAAATGTCCGTCCGTCTCTAAATAAACTTTACATTCTGGAGTCCAATCAGGAGTTGAGGACATTGAATTGTGCCTCATCAGACAGTTGCAGCTACACAATATTTCTGCACAGAAGTGAAAATTCATCCATGTCTCATATCACTCTACACATGAGATCCTCTGAAATTGTGTGGGTGTGGCAGTGTAAAGTCACTAGGGGGCGCTCATGTCTAAACAACACAGTTTCAGAATCTGAATTCTCTGACCAGAAGATTGCCTTCACAAAGGGGAACACTCACTCATGGTCAGTTCCAGTGGCATCCTTTCAAGATATTGCCTACCATTTTCGGgtgtctctgtctGGTGAGGTAAGCTGCTCTGGTGAAAAGGAGAGGAAGGACTCTGTGCAGTTCTCTGATTACTATGTCCTCATTCAGAGCAGGTGTGCTTGAGAGGAAGTGTCCAGTGAACAGCTTCTTTGAACCCATTTTTAATCTTCACTCATTTGCAGTGTGCTCAAGGTTGACTGAAAGTAGCCATAACGATGGAACACCTttgaaaaatgtgtgttttagaagAGAATGTGACACATcccagtgttaaaacaagcacaGCTTTTTACCTGTAGGGGAATCTACCAGTAAATTACACACCTGAGAGAGATAACAGACTCTAAGCtcccagatgtttttttttccgggTTTCTGTCTTACTGTTATGCCGATAACACAGACAACTGtatggtgtgtgagagtgtgtgtgtgtgtgagtgagagtgtgtgtattaggCACTTACTTAGGGACATTTTCCCCATTGTTCATCTCCGTCCATGGGTAATTCTGGGTATATTATAAAGATATGCTTTGTGCTGGGACACTGTCAGACTCTTAAGATCTGGAGGTGAAGAGTCACCGGCCCACGTAAGCATTTACTGGAAAGTAAACATAATTGAACTAGCAACTGGAAGCAGTCATCCAATGACCTGAATTGCATTGTTTTGGATATATCACACGATTTTGTACTAGTTGTTAatagttattaatattattaaaagaagGCCAGAGCCTAAGCCATGGTATTAAACCATCTCAAAAAGCAACCACTGGACCTTAATTAAAATCACTGGATTGAAGAAACTGGAAGACATTACAGAAATACACTGGAAGGAGGTATATTAAGTCTAACACTGACAAGTGTCAGAAACACTGGATTATAACTCcatattaaaatgctttaatgatgACAGATGTTGACAATTGACTTTGTTAAAGAAACATTGccttcttaaaaaaatacatttactatCAAATGAACATCATGCTTTAACAGGTTATTTTTCTCTACTGAAATGTATAGAAATTGTTGTGTTTATTAGATGTTACATTTCTCTACATGTATCAGTGTGCGTTATGTACCTACAGTAAGCACATAatctctgtttcttttcttccttttttgtttcaaaaactgattcagaattttTCATTTGATCCATTAGTCTTAAGTTTTCCAAGGGAAAAAATCATTTATCACTGAAACTTTTCTAAAGTGCAGCACAATGTTTATCTCAAACGCAGTACTTTACTGCCAAGTTTGTACTCTTTTTACATGTATACTGTTCACAATAATGTAAAGATTTCGTGATTCATACAGGTTCAGTGCATGGATATGGAACATGGATGCAATATttcaaagcaataaaataagcTGAGGCTGTGGAAGGAGACATATGCAGTATGTTTGGTGATTATGTTTATTAGATTGCTAAAATGATTATCTGTTCATCTGAGTCCTGCATTAGAGACCAACAGCATGTTTATAAGTGCCTCAGATATGAAGCTTGCTCATTTTCAGCTGAACCAATAAATGAAAGACACAATGAGAGAGCTAGAGGGTAACAGAAGATCTGAAAATGAAATGTAAGAAAAGTgtagtttattttgtttctcCTGTTTCGAAGTAGCAGTCGCATGCATTACTCAGTGGCCTTTGATGGAAGATGCAACGGGCAGCTCCACACTAtgcactgtaaatatatttctaaCGGCTTCTTGTGTAGGCTGAACTGCTTTATAATGCTCTGGGGAGAAGGCAGTgtgattttattgtatttttaatgttttgtagtAATTATTATTCATTGCATCACttactcttctttttttataacttaCTCTTTATTAAGTATGGTCATGCAGAATTGGTGTGCTTGTACAATTATCACAATTTATTCAAAACTGTTTTCTTCTTAATTcttgctattttatttttagagcaTTAAAAATTAgcacaaaaatcacagtttctgtatgctgtttgtatttaattcCTATAATCTCAGCAGTTTAAAACCTTGTGTGCACTAAAGTATGAAATAGCTTATTTAATCATATCTTACTATTGTTCACATGGACCTTAaaaatgtcagtgttttttcctttattatgACCTACATAATAATTTGTGTTCATATCATGGAAGTGTACTGATCTTGTAATATGAATGTATGTCGATATAAtgattaaattaacatttttgaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671925.1 True 2835 mRNA 0.37 7 24865790 24871366

Neighbor

gene id symbol gene type direction distance location
myrf myrf coding upstream 4864 24802002 ~ 24860926 (+)
fads2 fads2 coding upstream 125707 24725144 ~ 24740083 (+)
LOC103028282 syt7,LOC108432693,LOC107754343,LOC107551433,LOC107655153 coding upstream 218241 24426129 ~ 24647549 (+)
LOC103029007 si:dkey-201c1.2,slc25a22,LOC107561181,LOC107732297,LOC107551436 coding upstream 464065 24361414 ~ 24401725 (+)
LOC103029535 pidd1 coding upstream 506615 24342743 ~ 24359175 (+)
LOC103024697 NA coding downstream 27670 24899036 ~ 24919450 (+)
LOC103025216 NA coding downstream 55647 24927013 ~ 24946686 (+)
hdac10 NA coding downstream 81459 24952825 ~ 24966947 (+)
LOC103044987 NA coding downstream 315259 25186625 ~ 25230901 (+)
gtf2h1 gtf2h1,LOC107572319 coding downstream 365053 25236419 ~ 25246778 (+)
LOC111193114 NA non-coding upstream 154839 24566804 ~ 24710951 (+)
G76226 NA non-coding upstream 279658 24561664 ~ 24586132 (+)
G76225 NA non-coding upstream 302630 24527631 ~ 24563160 (+)
G76217 NA non-coding upstream 403231 24441085 ~ 24462559 (+)
G76349 NA non-coding downstream 49769 24921135 ~ 24922440 (+)
G76367 NA non-coding downstream 112786 24984152 ~ 24984391 (+)
G76463 NA non-coding downstream 422039 25293405 ~ 25293928 (+)
G76468 NA non-coding downstream 445829 25317195 ~ 25318657 (+)
G76472 mpi,LOC106560745,LOC106584640 non-coding downstream 452027 25323393 ~ 25327069 (+)
G76192 NA other upstream 605284 24258509 ~ 24260506 (+)
LOC103035272 LOC108432640,LOC107569703,LOC107720762,LOC107670190,LOC107740887 other upstream 782946 24053061 ~ 24082844 (+)
LOC103038709 LOC103038709,LOC108432651 other upstream 827929 24032092 ~ 24037861 (+)
G75974 NA other upstream 948187 23915791 ~ 23917603 (+)
G75938 LOC105900730,LOC105912833 other upstream 1377920 23487530 ~ 23487870 (+)
LOC111193110 NA other downstream 2034 24873400 ~ 24898537 (+)
G76358 NA other downstream 75422 24946788 ~ 24948149 (+)
LOC103022391 parvb,LOC108432702 other downstream 103575 24974941 ~ 24983714 (+)
LOC103022708 NA other downstream 117030 24988396 ~ 25004515 (+)
G76423 NA other downstream 312719 25184085 ~ 25184732 (+)

Expression


Co-expression Network