LOC111193065


Basic Information

Item Value
gene id LOC111193065
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 404610 ~ 410222 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671935.1
AACCACAATAGGCTACTCCATGCCTATTTGCGTTTTGAAGCCCTAACTGAACATGATTACACATTTCATTGTGTTACGTGTGGACACCACCCTCCAGTAGTGCTGATGGACCTTCACAAAAAAGGGGTTTTTAACATGCCTGGTGCAAAAAGAAACCAATTCAGTGTACAGCCCTCATTTGATTTCTGGGCTCCCTGGATAGGTCTGATGTTGTGCTGAACACTGAATGGGAGAAAGTGCACCGATCAAGAGAACCAGCAGAGATTTCTGAAGTGTCTTTCACTGAAGACAGACTTCTGAATGAAGTGGATTTGGTAAGGCAGCTATGTAAAGAGACTGGTCTAGACCATACAGGATCCAAAATGGATCTCATTCTTCGCCTCAGGGATGAAATACAGACCAGGAATATGTATGACAAAATATTTGAGAAGATTTGGGGAGCTTCAGGTGGCTGGGCTGTAATAATGTGCCCATGCGGAGTCGTGTACAGTGTGAAGTTCAATTGACGTGCAGAAAGTCCAAGAGACTACATGGATCTTCTCTTCTCTGGGAAACATATGCCTAATGTGGCAGTATATGATTTTGCCCGGGGATTGGCAACACATGGTAACTTAAGACAGCCAGAGGATTTGCCTTTTACCCCTCATGAGGGAAGACTTCTGCAGCCAACCGAAGAAAATATAAGGCTTGCCAAAGACAAGAAAATCTCTGTCAGTCTCCCATGGCTTGTAGAGAAGAAAATGCCATCAGATGTAAATGGACATCCAGTCACCGGTTCATCTAAACACTATGTAATCTATGACACGCTGCATGAATCAAACACCAAAGACGAAAAAGACTTCCTACGAAGAATCAACCTTGTACCTGAACTTGTGGAACAGTTCTTTTCGAGGATGGAAAGAAACAATTATTATCTTAACATGATGTCCCCTGCTAGCCAGGTATTTTTGATCAGATCTATAATACACCATGGAAATGTCAAATTAAATGAGGCAAGGCTAGAGAAGGTAAAGAAAGGACTGGGACTGGAGAACATTTCATTCGACAGATATGGACGAGCGACAATAgGAGATGTGCCAGAGCCTTTTTTGGCATACTCCATTGGTACAACAGCTCAGATGCAAGATGCAGTGACAGCACCCACAAGTGTGGCAGCAGATGACATGAACATAAGTAGATGTGAGGTTATTACTCAGTTGGAGCATATTCATGCCAATCGAGAAATTTGGAATCAGACCTTGACAACAGAACAAATCAGACTGCTTGACCGTGTGTTGGACACTCAGAAATCAAATGATGAAAACATTGTTCAAATCTACAAGTGCACTTTGAAAAGATCAGACTTTTTGACCCTGGGGTTAAGCATGGAACTGGAGGCAACAATTGCCAACTGTTGCCTGCAGCTAGTTACTGAAATTGCCAGACATCGGGGAATTGATGCCTACACTGTGGATCCGTATGTTGTGGTGACCTGGAAGCCTCCATACAATCAAGATCCTTTTCGTTCCCTTCCGcctGATGCTGGATCAAAAGATGTCATCTTGCTCCCCTCTTGGCAACCAGGACACTGGGTTTTATGTTAAAATTGCTACAATGATGTGCCCGGGGAGGTGGATTGTTGCCAAAAACAAGAACATACCACAGCAAACTCCTGGTTCACTAGACTGTGGAATATATATGTTAATGTACGCTCTTCACATGACTTTGAGGGAACAGTTTGATTTCACAAACGTAAGCCTTTTAGTGTGCagtacagttttttattttttatttcctctgGTTACCATTATTagctaattattaaatatttgtgtCTTAGGGTGATATTGCAGATCTAAGGAAGTGGTGGTGTTTACTACTTCTGGAAAACTGTGACACAAGATTTTTCAGTGGCACCAGTGGGCTGACTGGCGAAAACAAAGACCAGGAGATGGAGACAAGCAGTGATGCATCCTCAGCTACAAGAGAGAAACAAATCTGTGAGGCTGCTGATGCGAGCAGGGCTGCACGGAATTCAGAAAATGCATTGTTACTGGACTTCATCACAAAAAGCCATGGTGCAGATGAACATTTCATGaaTGTCGTAACTGGACAAGTGGCATCCAAGTGGATAGAAAATTTCCGAAATCCTAGAGGTCAACGAGTCATGACATATATTGAAGATGAGGAGCAGATTGACTCACTTTATAGCTACCAGTGTATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671935.1 True 2204 mRNA 0.43 16 404610 410222

Neighbor

gene id symbol gene type direction distance location
LOC103044001 NA coding upstream 127413 257979 ~ 277197 (+)
LOC103044287 NA coding upstream 158614 228631 ~ 245996 (+)
LOC107197271 NA coding upstream 181113 203641 ~ 223497 (+)
LOC111193039 LOC108435834,LOC108435830 coding upstream 237290 161625 ~ 167320 (+)
LOC107197418 LOC106526644,LOC104958602 coding upstream 255661 146445 ~ 148949 (+)
LOC103036550 NA coding downstream 230469 640691 ~ 778006 (+)
LOC103042240 LOC103042240 coding downstream 457687 867909 ~ 877404 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding downstream 489672 899894 ~ 912522 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding downstream 547198 957420 ~ 972843 (+)
gpx3 LOC108415088 coding downstream 2280516 2690738 ~ 2701134 (+)
G70282 NA non-coding upstream 80343 322737 ~ 324267 (+)
G70214 NA non-coding upstream 125623 278246 ~ 278987 (+)
G70220 NA non-coding upstream 215823 188241 ~ 188787 (+)
G70200 NA non-coding upstream 238503 73530 ~ 166107 (+)
G70320 NA non-coding downstream 26015 436237 ~ 445490 (+)
G70328 NA non-coding downstream 82121 492343 ~ 492584 (+)
G70330 NA non-coding downstream 92467 502689 ~ 530975 (+)
G70351 NA non-coding downstream 290349 700571 ~ 702486 (+)
G70345 NA non-coding downstream 331114 741336 ~ 781737 (+)
LOC111193042 NA other upstream 83674 317331 ~ 320936 (+)
LOC103042548 NA other downstream 384490 794712 ~ 840214 (+)
LOC111193067 NA other downstream 434803 845025 ~ 855158 (+)
G70385 NA other downstream 595261 1005483 ~ 1005838 (+)
G70522 NA other downstream 858545 1268767 ~ 1269404 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other downstream 1678698 2088920 ~ 2193559 (+)

Expression


Co-expression Network