LOC103036550


Basic Information

Item Value
gene id LOC103036550
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 640691 ~ 778006 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671936.1
CAGAGTGCGGACCGTAAAGGCTGAAGGCGGAGATacgacacacgcacacacaggcgAGCGCGCGCTGCTGAACAGAGGAACGGCACGCGCGCGGACGGATCTGTCTGCTGCAAAGAAGATTAGCGCTCACCTGCTGCTGTTGCACGCGCGAGCTCCGGAACTCAGGAATTCATCTACGCTGATTGGTgtgttggtctggaagtgaggtgtgttcagGTGGACGGACGCTGGGACGTGGGCGGACGCCGCGCTGACCCCATTAAGTCAACAGCCTGAGCGGAGAAGAAGGCCGACGCTTGACCCTGTTGCGCTCGCCTCTTCACACTCTGGAGCTGTGATGAATGCTGAGAGTTCTGCGGCGCAAATGAGCCTGGTTGACACCTCCCGGAGAAGCCGATTTAATTAGCATCTCCTCCAAGTTCAACTACGGGAAATAAGAGTGTGGAAACTGGATGGATTAACCTTGACGCTTTAGCGCTTTAGCTTTTTAAAGAAGGCGAAAAGAACTGAGACAGAAGAACTGAGCAAGAAAAGGAACGACTTCTTGAGGCTTGACCTCTGGAAGAGATCTCAAGGTGGTACGTCTCGAGGTGAAGGACCTAAAGCTACGTAAAGCTATTGTGTTTTAGGACTATAAGTTAAagactgttgaactgttgaacagACTGTCGGCCAAGATGTTGTGCCAGAAGAGGAAGAAGCACACACTGGGCGTTATGCTCTTCATCGTTTCCTTCTCCATGTTTTTGTTTAGCTGCACCCTCCACAACCCCTCGCTCTTATTCAACAGATCCCTGAGGATCGCGGCCGGACGCTGCGCCTGTCAGCGCTGCATCATGGCGCCGGAGGACGACTCCTGGTTCAGCGACAAACTCAACCATTCTGTTCATCTTCTGCTGACCAGGACCAACAGCGAGCTCAGTAATGAGACCTACAGGTGGTGGCAGtgGTTACAGTCAGAGAGAAACCCGGCGAATCTGAGTGTGGTGGTGGATAAGTTGTTCCAGGTGATTCCGGGAGAAGATGATTTGATGGACTCGAGTCCGAGCCGGTGCCggacctgctctgtggtggggAATTCTGGGAATCTGCGCTCTTCCGGATACGGACCTCAGATCGACGCTGCGGAGATTGTCATCCGGATAAACCAGGCTCTGACGGAGGGCTTCGAGGAGGACGTGGGCCGCAAGACCACCCATCATGTGATGTATCCTGAGAGCGCACTAGACCTGAAGAGTAACTCCACCGCTCTGGTGCTGGCCCCCTTCAAAATCCTGGACCTGGAGTGGATCATTAGCGCACTGACCAACGGCAACATCACGTAtaccTACATGCCAGTCATGCCACGGATCCAGGCTAACAAGAACAAGGTGCTGGTCTACAATCCTGCATTCCTGAAGTACGTCCACGAGGTGTGGCTGGACGGTCACGGCAGATACCCGTCCACCGGCTTCATCTCGCTCATCTTTGCTCTGCACATATGCGATGagGTAAATGTTTTTGGGTTCGGAGCAGACCGGTTTGGTAACTGGCACCATTACTGGGAGGAGAATTTACTGGGCCAGGCGTTCAGACAGACGGGCGTTCACGACGGAGACTACGAGTATAACATCACCCAGGTGCTCTCCAACAAGGGCAAGATCAGACTGTTTAAAGGAGTCAACCGCCCCCTTACCATGGAGTGGGCGGACTAGATACACacgcactgcacacacacacacacacacaccaaatgtatacacacacaccaaatacaCACACGGATGGATGAGGCTGAGTACTCTGGATCTCTCTGAAAACTGAATATTTCTGAATATATTGAACTGTGAATATAAATATGATGGAGGACATAAGTTCAGAACTTCAGCGTCTAGTTGGAAGGAAAaagtctctttctctatttttctctttttctcattcattcattcattcattcatcatctttctctctctttctctttattcattttatatttatctctCTCATGCCGCGTCGTTCCATACAAACAGAATTATTACATATATGACTTTGACCACCTTGACCAGAGCACTTAACCCTCACtgctatttattcatttaattatttattaactgtgACCCATATTGGTTTACTTATAAGCAACTTAAACTTATTTGAGGGAGTGTCTATAAATATTTTGGACATGTAGAGTATACTATACGTATCACGTTCACATTACCACCAggctcaaatctgttttttttttttttctcaaatgtggctcagatctgatttttcatAGCCGTGTAAACGtaccaaatctgttttttttttttgttttgctcaaGTTTGTtttaagtcactttcatatATAGTCTTAAACCAGATATGTATCTGAtacatggacatgcgacattaatgtgaacggtcaaatcagaattcatgcgtctttttgatTTTAggccttagcattagc
>XM_022671937.1
CAGAGTGCGGACCGTAAAGGCTGAAGGCGGAGATacgacacacgcacacacaggcgAGCGCGCGCTGCTGAACAGAGGAACGGCACGCGCGCGGACGGATCTGTCTGCTGCAAAGAAGATTAGCGCTCACCTGCTGCTGTTGCACGCGCGAGCTCCGGAACTCAGGAATTCATCTACGCTGATTGGTgtgttggtctggaagtgagGTGGACGGACGCTGGGACGTGGGCGGACGCCGCGCTGACCCCATTAAGTCAACAGCCTGAGCGGAGAAGAAGGCCGACGCTTGACCCTGTTGCGCTCGCCTCTTCACACTCTGGAGCTGTGATGAATGCTGAGAGTTCTGCGGCGCAAATGAGCCTGGTTGACACCTCCCGGAGAAGCCGATTTAATTAGCATCTCCTCCAAGTTCAACTACGGGAAATAAGAGTGTGGAAACTGGATGGATTAACCTTGACGCTTTAGCGCTTTAGCTTTTTAAAGAAGGCGAAAAGAACTGAGACAGAAGAACTGAGCAAGAAAAGGAACGACTTCTTGAGGCTTGACCTCTGGAAGAGATCTCAAGGTGGTACGTCTCGAGGTGAAGGACCTAAAGCTACGTAAAGCTATTGTGTTTTAGGACTATAAGTTAAagactgttgaactgttgaacagACTGTCGGCCAAGATGTTGTGCCAGAAGAGGAAGAAGCACACACTGGGCGTTATGCTCTTCATCGTTTCCTTCTCCATGTTTTTGTTTAGCTGCACCCTCCACAACCCCTCGCTCTTATTCAACAGATCCCTGAGGATCGCGGCCGGACGCTGCGCCTGTCAGCGCTGCATCATGGCGCCGGAGGACGACTCCTGGTTCAGCGACAAACTCAACCATTCTGTTCATCTTCTGCTGACCAGGACCAACAGCGAGCTCAGTAATGAGACCTACAGGTGGTGGCAGtgGTTACAGTCAGAGAGAAACCCGGCGAATCTGAGTGTGGTGGTGGATAAGTTGTTCCAGGTGATTCCGGGAGAAGATGATTTGATGGACTCGAGTCCGAGCCGGTGCCggacctgctctgtggtggggAATTCTGGGAATCTGCGCTCTTCCGGATACGGACCTCAGATCGACGCTGCGGAGATTGTCATCCGGATAAACCAGGCTCTGACGGAGGGCTTCGAGGAGGACGTGGGCCGCAAGACCACCCATCATGTGATGTATCCTGAGAGCGCACTAGACCTGAAGAGTAACTCCACCGCTCTGGTGCTGGCCCCCTTCAAAATCCTGGACCTGGAGTGGATCATTAGCGCACTGACCAACGGCAACATCACGTAtaccTACATGCCAGTCATGCCACGGATCCAGGCTAACAAGAACAAGGTGCTGGTCTACAATCCTGCATTCCTGAAGTACGTCCACGAGGTGTGGCTGGACGGTCACGGCAGATACCCGTCCACCGGCTTCATCTCGCTCATCTTTGCTCTGCACATATGCGATGagGTAAATGTTTTTGGGTTCGGAGCAGACCGGTTTGGTAACTGGCACCATTACTGGGAGGAGAATTTACTGGGCCAGGCGTTCAGACAGACGGGCGTTCACGACGGAGACTACGAGTATAACATCACCCAGGTGCTCTCCAACAAGGGCAAGATCAGACTGTTTAAAGGAGTCAACCGCCCCCTTACCATGGAGTGGGCGGACTAGATACACacgcactgcacacacacacacacacacaccaaatgtatacacacacaccaaatacaCACACGGATGGATGAGGCTGAGTACTCTGGATCTCTCTGAAAACTGAATATTTCTGAATATATTGAACTGTGAATATAAATATGATGGAGGACATAAGTTCAGAACTTCAGCGTCTAGTTGGAAGGAAAaagtctctttctctatttttctctttttctcattcattcattcattcattcatcatctttctctctctttctctttattcattttatatttatctctCTCATGCCGCGTCGTTCCATACAAACAGAATTATTACATATATGACTTTGACCACCTTGACCAGAGCACTTAACCCTCACtgctatttattcatttaattatttattaactgtgACCCATATTGGTTTACTTATAAGCAACTTAAACTTATTTGAGGGAGTGTCTATAAATATTTTGGACATGTAGAGTATACTATACGTATCACGTTCACATTACCACCAggctcaaatctgttttttttttttttctcaaatgtggctcagatctgatttttcatAGCCGTGTAAACGtaccaaatctgttttttttttttgttttgctcaaGTTTGTtttaagtcactttcatatATAGTCTTAAACCAGATATGTATCTGAtacatggacatgcgacattaatgtgaacggtcaaatcagaattcatgcgtctttttgatTTTAggccttagcattagc
>XM_022671939.1
TAATGGATTAGTTGCCACGGTGTTGCTTTGAAGTAAGGGTTGGTTGATAAGTTGTTGCTATATTATAGATGTTAGTTGATAAAGAGTTGCTATAGGTGGTTACTGTTGTTAATGGGTGGGTTGCTATGGTTCTGCTATAGTATAGATGTTAGTTGATAAAGAGTTGCTATAGGTGGTCACTGTTGTTAACAGGTGGGTTGGTAAGGTGTTACAGAGTTCTGATTGCATCACATGTTTTGAGAGGCGTGTTTTACTCAGTAGAATGTGGTATTATTGCACAGTGCAcagctgtttttatttcctCATACTCTTTCAATCCAACCTGAGGATCAGGCTGAAACTAAAATCCCCACTCTCTGACTGACACCGTCCCTGGCTGAGGGCGGAGCAGTGTGGGGTTTAGTGTAGGACGCCGGTGCAGACGGCAGGCTGTACAGTCgcggtgtgtgagggtgtgtgtgtgtgtgagaaggacAGCGCTGGTGAAGAAGCTCTGTGAGCAGATGTTGCTGGTGTCTGGGCAGATGTGCACCTGCTCTTTTATCTCTGAGGTGGACGGACGCTGGGACGTGGGCGGACGCCGCGCTGACCCCATTAAGTCAACAGCCTGAGCGGAGAAGAAGGCCGACGCTTGACCCTGTTGCGCTCGCCTCTTCACACTCTGGAGCTGTGATGAATGCTGAGAGTTCTGCGGCGCAAATGAGCCTGGTTGACACCTCCCGGAGAAGCCGATTTAATTAGCATCTCCTCCAAGTTCAACTACGGGAAATAAGAGTGTGGAAACTGGATGGATTAACCTTGACGCTTTAGCGCTTTAGCTTTTTAAAGAAGGCGAAAAGAACTGAGACAGAAGAACTGAGCAAGAAAAGGAACGACTTCTTGAGGCTTGACCTCTGGAAGAGATCTCAAGGTGGTACGTCTCGAGGTGAAGGACCTAAAGCTACGTAAAGCTATTGTGTTTTAGGACTATAAGTTAAagactgttgaactgttgaacagACTGTCGGCCAAGATGTTGTGCCAGAAGAGGAAGAAGCACACACTGGGCGTTATGCTCTTCATCGTTTCCTTCTCCATGTTTTTGTTTAGCTGCACCCTCCACAACCCCTCGCTCTTATTCAACAGATCCCTGAGGATCGCGGCCGGACGCTGCGCCTGTCAGCGCTGCATCATGGCGCCGGAGGACGACTCCTGGTTCAGCGACAAACTCAACCATTCTGTTCATCTTCTGCTGACCAGGACCAACAGCGAGCTCAGTAATGAGACCTACAGGTGGTGGCAGtgGTTACAGTCAGAGAGAAACCCGGCGAATCTGAGTGTGGTGGTGGATAAGTTGTTCCAGGTGATTCCGGGAGAAGATGATTTGATGGACTCGAGTCCGAGCCGGTGCCggacctgctctgtggtggggAATTCTGGGAATCTGCGCTCTTCCGGATACGGACCTCAGATCGACGCTGCGGAGATTGTCATCCGGATAAACCAGGCTCTGACGGAGGGCTTCGAGGAGGACGTGGGCCGCAAGACCACCCATCATGTGATGTATCCTGAGAGCGCACTAGACCTGAAGAGTAACTCCACCGCTCTGGTGCTGGCCCCCTTCAAAATCCTGGACCTGGAGTGGATCATTAGCGCACTGACCAACGGCAACATCACGTAtaccTACATGCCAGTCATGCCACGGATCCAGGCTAACAAGAACAAGGTGCTGGTCTACAATCCTGCATTCCTGAAGTACGTCCACGAGGTGTGGCTGGACGGTCACGGCAGATACCCGTCCACCGGCTTCATCTCGCTCATCTTTGCTCTGCACATATGCGATGagGTAAATGTTTTTGGGTTCGGAGCAGACCGGTTTGGTAACTGGCACCATTACTGGGAGGAGAATTTACTGGGCCAGGCGTTCAGACAGACGGGCGTTCACGACGGAGACTACGAGTATAACATCACCCAGGTGCTCTCCAACAAGGGCAAGATCAGACTGTTTAAAGGAGTCAACCGCCCCCTTACCATGGAGTGGGCGGACTAGATACACacgcactgcacacacacacacacacacaccaaatgtatacacacacaccaaatacaCACACGGATGGATGAGGCTGAGTACTCTGGATCTCTCTGAAAACTGAATATTTCTGAATATATTGAACTGTGAATATAAATATGATGGAGGACATAAGTTCAGAACTTCAGCGTCTAGTTGGAAGGAAAaagtctctttctctatttttctctttttctcattcattcattcattcattcatcatctttctctctctttctctttattcattttatatttatctctCTCATGCCGCGTCGTTCCATACAAACAGAATTATTACATATATGACTTTGACCACCTTGACCAGAGCACTTAACCCTCACtgctatttattcatttaattatttattaactgtgACCCATATTGGTTTACTTATAAGCAACTTAAACTTATTTGAGGGAGTGTCTATAAATATTTTGGACATGTAGAGTATACTATACGTATCACGTTCACATTACCACCAggctcaaatctgttttttttttttttctcaaatgtggctcagatctgatttttcatAGCCGTGTAAACGtaccaaatctgttttttttttttgttttgctcaaGTTTGTtttaagtcactttcatatATAGTCTTAAACCAGATATGTATCTGAtacatggacatgcgacattaatgtgaacggtcaaatcagaattcatgcgtctttttgatTTTAggccttagcattagc

Function

GO: NA

KEGG:

id description
K00780 SIAT4A; beta-galactoside alpha-2,3-sialyltransferase (sialyltransferase 4A)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671936.1 False 2435 mRNA 0.48 8 640691 778006
XM_022671937.1 False 2425 mRNA 0.48 8 640691 778006
XM_022671939.1 True 2770 mRNA 0.47 7 714556 778006

Neighbor

gene id symbol gene type direction distance location
LOC111193065 NA coding upstream 230469 404610 ~ 410222 (+)
LOC103044001 NA coding upstream 363494 257979 ~ 277197 (+)
LOC103044287 NA coding upstream 394695 228631 ~ 245996 (+)
LOC107197271 NA coding upstream 417194 203641 ~ 223497 (+)
LOC111193039 LOC108435834,LOC108435830 coding upstream 473371 161625 ~ 167320 (+)
LOC103042240 LOC103042240 coding downstream 89903 867909 ~ 877404 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding downstream 121888 899894 ~ 912522 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding downstream 179414 957420 ~ 972843 (+)
gpx3 LOC108415088 coding downstream 1912732 2690738 ~ 2701134 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding downstream 2050403 2828409 ~ 2854104 (+)
G70330 NA non-coding upstream 109716 502689 ~ 530975 (+)
G70328 NA non-coding upstream 148107 492343 ~ 492584 (+)
G70320 NA non-coding upstream 195201 436237 ~ 445490 (+)
G70282 NA non-coding upstream 316424 322737 ~ 324267 (+)
G70214 NA non-coding upstream 361704 278246 ~ 278987 (+)
G70366 NA non-coding downstream 85515 863521 ~ 937620 (+)
G70361 NA non-coding downstream 135047 913053 ~ 914183 (+)
G70372 NA non-coding downstream 172901 950907 ~ 957398 (+)
G70373 NA non-coding downstream 194884 972890 ~ 974277 (+)
G70374 rps5,LOC107086176 non-coding downstream 200557 978563 ~ 1019860 (+)
LOC111193042 NA other upstream 319755 317331 ~ 320936 (+)
LOC103042548 NA other downstream 16706 794712 ~ 840214 (+)
LOC111193067 NA other downstream 67019 845025 ~ 855158 (+)
G70385 NA other downstream 227477 1005483 ~ 1005838 (+)
G70522 NA other downstream 490761 1268767 ~ 1269404 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other downstream 1310914 2088920 ~ 2193559 (+)

Expression


Co-expression Network