LOC103026956 (ctnna1)


Basic Information

Item Value
gene id LOC103026956
gene name ctnna1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 1998156 ~ 2220364 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671943.1
CCTCCCCCCTCCGCTCCCACCCAGAACAGCCCTGAAAGGGAGAAAAGCGAGGCGTTCAGAAAGTGTGTATAGCGCGGATCTGCTGAGGAAACCAGCTGAGGATCATTTCAGCCTTTTTACCCGCGGTCTGAGTGCGTGTGCAGGGCTTTTCACCCACCGGAGAAAGCTTTAATACCGGGATCAGCGGCGGGAGGAAAACTTTCACCGGAATTTTAACCGCTCTTCCTCCATTTTGAGGTTTCGCCCAACTTAACTTTGTGTTTATCGTGTTTCGAACCACGAAATCATGACTAGTATTAATACTGCCAACATAAACTTCAAATGGGATCCCAAGAGTCTGGAGATCCGCACTCTCGCTGTGGAGAGACTGCTGGAACCTCTGGTCACTCAGGTTACCACCCTGGTGAACTCCAGCAACAAAGGACCATCTAATAAAAAGAAGGGGCGTTCCAAAAAGGCTCATGTTCTGGCTGCCTCGGTGGAGACGGCCACTCAGAACTTCCTGGAGAAAGGACAGAAGATTGCCAAGGAGAGCCAGTTTCTGAAAGAGGAGCTGACTGCTGCCGTGGAGGATGTTCGCAAGCAGGGAGATTCCATGCGGACGGCCTCTGGGGAGTTTGCTGAAGACCCCTGCTCCTCCGTGAAGAGAGGAAACATGGTGCGGGCTGCTCGCGCTCTCCTCTCAGCCGTCACTCACCTGCTCGTGTTGGCTGACATGTCTGACGTTTACCAGCTCCTGCTTCAGCTCAAACTGgtggaggagaacctgatGAAAGTGCGTAACGCAGGGACCGAGCAGGATCTGGGCATCCAGTACAAGGCTCTGAAACCTGAGGTGGACAAACTCAATATGATGGCAGCCAAGAGACAGCAGGAGCTGAAGGACGTCCACCATAAGGACCAAATGGCAGCAGCCCGAGGCGTTCTGCAGAGGAACATCCCCATGCTGTACACCGCTTCTCGCGCCTGCCTGCAGCACCCGGACGTGGCGGCTTACAAGGCCAACCGAGACCTGATCTACAAGCAGCTGCAGCACGCTGTCTCCGGCATCTCCAACGCTGCCCAGGCCACCAGCAGTGAGGACCCCTCCTTCAACCAGCCCGCGGGAGGAGGAGAGCTCGCCGGAGCTCTCAACAACTTCGACAGGCAGATCATCGTGGACCCACTGAATTTCAGCGAGGAGCGTTTCCGCCCGTCCCTGGAGGAAAGGCTGGAAAGCATCATCAGTGGCGCCGCACTCATGGCTGATTCGTCCTGCACTCGGGATGACCGCCGCGAGCGCATCGTGGCCGAGTGTAACTCCGTCCGTCAGGCTCTGCAGGACCTCCTCACTGAGTACATGGGCAATgcTGGACGTAAGGATAAGAGTGATGCTCTGAACACGGCCATTGACAGGATGACTAAGAAGACCCGTGACCTGCGCAGACAGCTGAGAAAGGCAGTGATGGACCACGTCTCCGACTCGTTTTTGGAGACTAACGTTCCTCTGCTGGTCCTCATCGAGGCTGCCAAAAACGGCAATGAAAAGGAGGTGAAGGAATACGCCCAAGTTTTCCGCGAGCACGCCAACAAACTGATCGAGGTGGCTAACTTGGCATGCTCCATCTCCAATAATGAGGAGGGCGTGAAGCTGGTCCGCATGGCCGCTTCCCAGCTGGAGACCCTCTGCCCTCAGGTGATTAACGCTGCCCTGGCCCTGGCCGCCAAGCCCAACAGCAAGGTGGCCCAGGATAACATGGACCTGTTTAAAGAGCAGTGGGAGAAGCAGGTGCGCGTGCTCACCGACGCCGTGGACGACATCACCTCCATCGACGACTTCCTCTCCGTGTCCGAAAACCACATCCTGGAGGACGTGAACAAGTGCGTGATCGCGCTGCAGGAGAAGGACGTGGACGGGTTGGACCGCACCGCCGGCGCCATCCGAGGCCGCGCCGCTCGCGTGGTCCACGTGGTCACCTCCGAAATGGACAACTACGAGCCTGGAGTCTACACCGAGAAGGTTCTGGAAGCAACTAAACTCCTGACTGAGACAGTGATGCCTCGTTTCACGGAGCAAGTGGAGGCAGCGGTGGAGGCTCTGAGCGCCAACCCGACCCTGCCGGTGGATGAGAACGAGTTCATCGACGCCTCGCGCCTGGTGTACGACGGAGTGAGAGACATCAGGAAGGCTGTGCTCATGATCCGGACTCCAGAGGAACTGGATGACTCCGACTTCGAGACCGAGAACTTCGACGCTCACAGCAGGACCAGCGTCCAGACCGAGGATGACCAACTCATCGCTGGACAGAGCGCCCGGGCCATCATGGCTCAGCTGCCCCAGGAGCAGAAGGCCAAGATCGCTGAACAGGTGGCCAGTTTCCAGGAAGAGAAGAGCAAACTGGATGCTGAAGTGTCCAAGTGGGACGACAGCGGCAATGACATCATCGTGCTGGCCAAGCAGATGTGCATGATCATGATGGAAATGACCGATTTCACCAGgGGGAAAGGGCCGCTGAAGAACACGTCCGATGTTATCAGCGCCGCCAAGAAGATCGCAGAGGCAGGTTCCAGGATGGACAAGCTGGGCCGAACCATCGCCGACCAAGTAAGTTCTAAGTCCAAAGCTTTAAAGGCCTCAGCTCCGGGCGTGACGCACGGGGGCTAACCCAGGCGGCTTGTG

Function

symbol description
ctnna1 Enables actin filament binding activity and cadherin binding activity. Acts upstream of or within tissue homeostasis. Located in adherens junction; cell cortex; and microvillus. Part of catenin complex. Human ortholog(s) of this gene implicated in patterned macular dystrophy 2. Orthologous to human CTNNA1 (catenin alpha 1).

NR:

description
PREDICTED: catenin alpha-1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005902 microvillus cellular_component
GO:0005938 cell cortex cellular_component
GO:0030057 desmosome cellular_component
GO:0016342 catenin complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0045296 cadherin binding molecular_function

KEGG:

id description
K05691 CTNNA; catenin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671943.1 True 2659 mRNA 0.57 16 1998156 2220364

Neighbor

gene id symbol gene type direction distance location
LOC103041113 ppt2 coding downstream 992279 988446 ~ 1005877 (-)
rps5 rps5 coding downstream 1015553 975095 ~ 982603 (-)
LOC111193040 NA coding downstream 1059972 932017 ~ 938184 (-)
LOC103044579 NA coding downstream 1801873 178319 ~ 196283 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding upstream 215316 2435680 ~ 2488996 (-)
LOC103022920 NA coding upstream 280624 2500988 ~ 2535981 (-)
dctn4 dctn4,LOC107749746 coding upstream 441147 2661511 ~ 2678905 (-)
anxa6 anxa6,LOC107750364,LOC107594885 coding upstream 543781 2764145 ~ 2816535 (-)
rmnd5b rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding upstream 738285 2958649 ~ 2982646 (-)
G70528 NA non-coding downstream 700127 1297709 ~ 1298029 (-)
G70526 NA non-coding downstream 709036 1288873 ~ 1289120 (-)
G70521 NA non-coding downstream 729714 1267968 ~ 1268442 (-)
G70515 NA non-coding downstream 833686 1164203 ~ 1164470 (-)
G70512 NA non-coding downstream 852142 1145783 ~ 1146014 (-)
G70578 NA non-coding upstream 10127 2230491 ~ 2230944 (-)
G70579 NA non-coding upstream 16935 2237299 ~ 2237515 (-)
G70597 NA non-coding upstream 90921 2311285 ~ 2346852 (-)
G70598 NA non-coding upstream 93432 2313796 ~ 2322706 (-)
G70602 NA non-coding upstream 110932 2331296 ~ 2346826 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 963140 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 483831 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 1059792 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 1223731 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 1355197 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 1516262 3736626 ~ 3848624 (-)

Expression


Co-expression Network