LOC103026657 (tspan17,LOC108436843,LOC107749748,LOC107680656)


Basic Information

Item Value
gene id LOC103026657
gene name tspan17,LOC108436843,LOC107749748,LOC107680656
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2435680 ~ 2488996 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671944.1
TCAGtatcgctgctgctgctgctgctttaatggATGTGGATGGTGTGTTGTTGTGTTCGGGACGTTTAAAACAAGGTTAAAGAGCGGAGAGCCGGGTGTCAGCGGGTCGGGCGGGTTCGGGCAGCGGTTCTGGCTCGGTTCGGCTGTGTGTTCGGGGCTGTGTGAGGAGTTTTAGCCCGCTGTGTGagtgtggaggaggaggaggagagggcgctgagctgctgctgctgctgctggttctgttgtggtggtggtggtggttgttgttgttgttagctAGTTATAGTTAGCTTAGTCAGCTGAGCTGGCTTGGCTGAGCTGGTTGATCTGAACTCCAGCTGCTCTAAAGGCTGATTTAAGCGAGTTCTGAGCCTCTGAATCAGACACTCTGAATGTATCTGCCGTTACTGGACCGGGTTCCTGCCTTTAAGTCGTGTTATTGCGGGCTGAGGACGGGTTTAAAGCTGGTAATCTGTAGGACAGAGAGCCCTGGAGGAAGTGACTTAAGCTGTTTAGTGAGTTAGTTGGAAGTTTAACTCAGGATGAGTAGAAAACACCAGCATTTTAAAGGAGCTGAAGTGAGCTGCTGTGTGAAATACTTTCTATTCGGATTCAACATCATATTCTGGttGCTGGGAGCGGCGTTCCTGGGTATTGGACTCTGGGCATGGGCTGAAAAGgGAGTGCTGTCCAACATCTCGTCCATCACAGACCTGGGCGGATTCGACCCCGTGTGGCTCTTCATTGTGGTGGGAGGGGTCATGTTCATCCTGGGCTTCGCCGGCTGCATCGGGGCGCTCCGCGAAAACACAGTCCTGCTCAAATTCttttcagttttcttaGGGCTCATCTTTTTCTTGGAGCTGACCGCTGGAATCCTGGCCTTCGTTTTTAAGGACTGGATCAAAGACCAGCTCAACTTCTTCATCAACAACAACGTCAAAGCGTACCGGGACGACATTGACCTGCAGAACCTCATCGATTTCGCCCAGGAATATtggtTATGCTGTGGTGCCCACGGGCCAAACGACTGGAACCTGAACATCTACTTCAACTGCACGGAGCTGAACCCCAGCCGAGAGCGCTGCGGAGTGCCTTTCTCCTGCTGCGTCAAAGACCCTGCTGGAGATGTCCTAAACACACAGTGTGGATATGATGTACGGCTTCAAGGAgAGCTGGCTCAGCAGGAGTTTATCTACACTAAGGGCTGCGTGGGTCAGTTTGAGAAGTGGCTGCAGGAGAATCTGATCGTGGTGGCTGGAATCTTCGTGGGTATTGCACTATTACAGATCTTTGGCATCTGTCTGGCCCAGAACCTCGTGAGTGATATCAAAGCGGTGAAAGCGAACTGGTGACCCGCGGCTGGCCTGGAGAGGAGAAGCCGGGCTCTGCGGGCGACGTTCGGGACCTGTGTGTCGCGTGGGTGGCGAAAGAGCACTGTTTACACGCCCACAGAGTGGAACCCCCTCTCACAGCTGTTCTCTGGAGCTTTATGTAAGCTGATGTTACAGAAATAGTgacattctgtctctctctctctctttctgtctctctctctgtctgtctgtttgtttctttctgtctctgtctttccatatatttttttattttattctcccACCACTATATTTGTTTTtggt

Function

symbol description
tspan17 Predicted to be involved in protein localization to plasma membrane and protein maturation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN17 (tetraspanin 17).

NR:

description
PREDICTED: tetraspanin-17

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K10303 FBXO23, TSPAN17; F-box protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671944.1 True 1640 mRNA 0.51 8 2435680 2488996

Neighbor

gene id symbol gene type direction distance location
LOC103026956 ctnna1 coding downstream 215316 1998156 ~ 2220364 (-)
LOC103041113 ppt2 coding downstream 1429803 988446 ~ 1005877 (-)
rps5 rps5 coding downstream 1453077 975095 ~ 982603 (-)
LOC111193040 NA coding downstream 1497496 932017 ~ 938184 (-)
LOC103044579 NA coding downstream 2239397 178319 ~ 196283 (-)
LOC103022920 NA coding upstream 11992 2500988 ~ 2535981 (-)
dctn4 dctn4,LOC107749746 coding upstream 172515 2661511 ~ 2678905 (-)
anxa6 anxa6,LOC107750364,LOC107594885 coding upstream 275149 2764145 ~ 2816535 (-)
rmnd5b rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding upstream 469653 2958649 ~ 2982646 (-)
LOC103025117 NA coding upstream 493051 2982047 ~ 3019753 (-)
G70629 NA non-coding downstream 778 2419559 ~ 2434902 (-)
G70628 NA non-coding downstream 31815 2403411 ~ 2403865 (-)
G70624 NA non-coding downstream 51513 2381317 ~ 2384167 (-)
G70605 LOC108436838 non-coding downstream 76451 2358811 ~ 2359229 (-)
G70597 NA non-coding downstream 88828 2311285 ~ 2346852 (-)
G70662 NA non-coding upstream 80891 2569887 ~ 2616400 (-)
G70666 NA non-coding upstream 149566 2638562 ~ 2703705 (-)
G70672 LOC108415088 non-coding upstream 184143 2673139 ~ 2701134 (-)
G70673 NA non-coding upstream 268147 2757143 ~ 2757834 (-)
G70691 NA non-coding upstream 277609 2766605 ~ 2766880 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 1400664 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 215199 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 791160 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 955099 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 1086565 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 1247630 3736626 ~ 3848624 (-)

Expression


Co-expression Network