LOC103022920


Basic Information

Item Value
gene id LOC103022920
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2500988 ~ 2535981 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671945.1
actccagagagagagagagagagagagacctctAAGCAGATGTAGTGGgtggaagctttttttttccttttttcccgcAAGTCCAAAGAGCTAGAAACCCCCCTCCCATCTGAGCCACTCTGACCTCCAgtcagaaacacaaacacaaagcttCGGTCAAGCCTGGACAGGCAGAGAAGCAAGCAGACGAGACGCTACAGACCACAAGACGCTTCCTCGCTCTTAAAACTCCTAAACTAATAACCTCCGCTGAACTTTCTCCAGCCTCGGGCCAGGAGGAAAGGATGGAGCAGGAGCACGACCCCGTCAGGAGAGGTGTCAGCTGGTCAGGGCCCGGGGCTACCACGCTGACCACGCTGGGAAGAGCCGAATCGCAGGAAACCCACGAAGAAGTGATCTCCTGTGGGGAAAGCGAGGACAGGACTAGCCCTCATGGATGGGAGAAGGAGAAGCACAGCTGGGTCAAAGTGAAGCCAGCCCTGACCTCTGGCTCCAGCCGGCTGGGACGCAAAACAAACCTCAGCCGAAGTGCCAGTCTCTCAGAGAAGGAGCTGAAGGAAGCACGAACACGAAGTCAGATCATTGCTGCACAGCTGACCATTTCGTCCAACCCCAACTCCAGAGGCGTCCAGCTTTTTAATCGACGGAGACAGAGGGTGAATGCCTTCACATTAGTGAGTGTAGGAGGAGGAGGCAACAACGAGTCCAGGAATGAACCGTACTCTCCTGCTTCAAGCACATTGACATGGGACAGAGACCACTCGCCTGACAACCAGTTCAAAGACTCACAGAATCACAGACGCAGTCAAACGCAAGTCCTGCAGGGACGTGACATGGAAGCAGGGGAGGTAGAGCGTGAGCTGGCAGATGTGGAGGACAGTGCAGGAGACAGACACTTTCTCCCTGTAAATGAGAAGGATGAGGAGATACTTGAAGAAGCAAAGGATGAGGTTACCTCTCTTGGCGACAGTACCACTGCAGTTCTTGATCAAGATGAACGAGAGGAACTGGAATTAAAAGCAGAGGCTTTTAAAGACATGCCGAACGGCTGCCACAGCGCACAACCCAATGGAGATGCATCCAAGCCAATGGCAAAGCAGCCAACCATTGTGAACAGGACAGCTCGACCCTTTTTCTCTCCAGCCACGGTGACCATGGCTAGTTCTGGGAGTCCTGCTCCAGACATCCCTCCAGCACTCTCCTACTCAACTCCTCCACTTACCTCTAACCAGGTACCACTCAGCAGTGCATATTCTGACCCACAACCACCAACCCGTGTCGATCCACCTTTCCCAGTGTTATCCAGACCAGCGTTCTCCCCTCCACCTCCTGCACCTTCGTACCCAACCCCTCCGCTTCCCACCTACATGAGCCCACCTCAGTCTATCCATTCAAACCCACCACCCTCCACCATGTCTGTCACATCACCTCCTCCCACCCCCACCTACTACGCTCCCCCGACTGCACCTCGGCCATTGTTTGTCCCTCAGTTCTTGAGCGAGAGAAGGTCGCTGACTCCCATTCGTACGGGAATTCTGGATGAAGGCGTTGTGCGGAGGTCCACGCGCAAGTCCATGTTCACGTTTCAGGAGAAGCCCAAGTTAGCTCCAAACCCTGAGCTTCTGTCACTGGTCCAGGGGACAGATCAGATGAGAAGAGGGAGGGGACAACCAGAGCCACAACAGCCAGAAGAGGAGCTGCTTGCCCTTGGTGCAGAGGCCTCCAATTTCCTAGCCAAAGATGGGGGCGGAGTGGAGGAGGCCTTGGTGCCAGAGTGGGCCTCCACACTCAAAAGCTCAAGGACTCGCAGCAGGATGGAGCACAAGCCAGAGCAAGCCCTGACTGATGCATCTGGTAAGGGAGCAGAGCTTTTTGCCAAGCGTCAGACCAGGATGGAGAAGTATGTCCATGAACACAAAGCCGGACCGAGGTCTCCTTCTCCGACTTCATCCCTGCCTCCTTCTTGGGTGTATCCATCAAACATGCCGGGTCGAGTCAAGGCTATCGTCAGCTCTTCCAATATCAGTGCAGAGATTACGAAATCTCTCAAAGTCAAGCAGGCCACGCAGAAGAAGAATGTTCCAGCAAAGATACAAGTATCTATTCCACCTCCAGTGCCAGAAACCCCAGCTTTGGAGAATGGCTGCAGCAGAGTGGAAATGGAACTGTCTAGGCACCAACCGTACCAGCTCAGTTCCTCCTTGTTCATCCTTAACCCAACCAAGGACCCCATGAGCACCCTTCCAAAAGCAGCACCACCACCAAAACCTGTACTGGCTGGATCCTCCTTCCCCAGACAGACCTCTCTCCCAGCAAGCCCCATCACCACCCAGTACAGTCCCTCAGCTGCCTACATATCTGCCCATTGCTTCTCACCCACCATGATGCCTCCAGGGTCCATGAGCAGTGGCCTCCAGTCAACTCCTGTGTCAGGTTTAGCGCCAGAACGTGTGGCTTCACCGAGGTCGGCTGCACAGGCACCCAAGCCAACCTTCTCTGCCAAGAAAGCTGGAATTGCCCCACAGGTTAAGGAAGAGTTACCAACTGCAGCTCCATCCAGCCGCTCAAGCACTCCAACGCCCTGGACGCCCAACCTTTCACGCCGCCTCAGCAGCCCTGAGGGCCCCTCGAGTCCAGTTTGGTCCCCCATCAGCCATCGCAGCACTTTGGTCACCTCCCCACCCCCTAGACCCATCCATAACCGAGTGACATCCTCCCCATCCCCTTCTTCATCATCCCCAAGACCCTTCTATGATCCGGTTACCTTCTCACCAACCCCAAAGTCAATCAAAAACCCCATCACCTCCCCTTCAACCCCAAGAGCATTCCAAAACACCAACCCAGTCCCACCATTCTCCAGGCCTGTCAACAACCGCACTGCCACGTCTCCAGTGTCTCCACCCTGGGAGACAAGGTGCCAATCCCCCATCAGCCCCCAGGACACCAAGGCCAATCACCGCCTCCTGGCCAAGAACATCATCAATGCAGCCAAGCGGAAAAACAGCCCCTCACCTGGGGCTCTAAGTGGACACAGTCTTCCTATGTCACCTGTAAGCAGCAGCATCCTGCCCTTCGAACACAAACCTGTGAGTCCATTTCAGTCTCGCTCACTGGGGGCCCAGTCCCCAACCTTCACCAGCCCCCCGCCTACTCCTACAGGCATGGTGCGGTCCCCCCTGCGACTCTACAACACCCGGTCGCTCACCGATTCTGATGCCTCGCTGGAATCCGAGGATTCGGGTGTGCGTTCATCTGGGGTGCGCAGCTACAACACCTGCCCACGTGGCTGGACTGGGAGTCTGAGAGTGAAAAGAGGAGGAATGTCCGAAGACCTGTAGGATGAAAGGGCTATGGGAGATGACAAACTGATGCTGGATGACAAACTGATAAACTGACAAACTGACAAACTGGCCAAGACAGTGGACCAAATGTTGATGGACCACCTGCAATGGGCTTCAACTACCCTCTTGGAAATGTACCTGCCTAAAGAGTTAAAGTCCAATCCCAAACTTGCTATGCTACCTTGCTACCTTGGATGTTCCTCAGTTGCAATATCCTAAAGAGTAGACTTGTGTACCTGGGATTAACCTTCTTGTCAAGTGACCAGGCAAAAGCAAACAAGACTTTAAGATGTTGACTGCTAAACATAGCTTCTTACCAAATGTGGGACCAAACTTTCATAGTCAAATATTGGTTGTACCAAGTGAACTAAAATACCTGGCATTCTTGTGATTTATGGGAACTTCAGTATTGTTTTGATATCAAGCCTCAAACTCATGTCATTATTCTACCAGTGCAATTAATTGTAATGCCTCAAGCATTTCACATTTAGGTTGAAGCTCAATGCAAGCAGAAAAGTTGATTGGCCTGATGGCCAATGAAGTATAGAACAAGTCTCAAACAGATACAAGCTCCTGTCAGTACTCAACCTATGCAGTTtaatgaaacatatttttttcaaatttgggATGGACCTTAACTCTGCAGGAAGGTTGGATAACTTGATGGCCAATGGAGTATAGAACAAGCCTCCAACTGATGCAAGCTGTTGCGAGTACTCAACCTTTTTGGTTTTATGGAATGGATTTGTACGTTGTGTTTCAGATTTGGATTTGAACTCTACCCTGCCCAAAGGTCCAAAGGGCTGCTGGCCAATGGAATACAGAACTTGTCTGCAACTGATGCTACCTTTTTATGTCAATGGGACGGAATTGGAGCTAGGCATCAAGCAAGTCAACAAGCCCTTAGTATGGTTCAGCTTTGGGTTGGACCTCAACTCTGTAGGGAGGTTGAAAGGGTGGATGGCCAATTGAGTACAGAACAAGTCACCAACTGATGCAAGCTGTTGTCAGTACTGTTCTTATTCAATTGTATGGAATGTATTTGGAAGCTGGGCATCAAGCAAGTCAACAAGAttctttgtgatttttttagattttggtTGGACCTCTAATCTGTAGGAAGTTTGAAAGTGTTGATGGCCAGTTGAGTACAGAACAAGGCTCCAACTGATGCAAGCTGTTGTCAGTACTGTTCTTATTCAATTCTATAGAATGGATTTGGAAGCTGGTCATCAGACAAGATTTGGGTTGAACCTCAACTCTGCAGGAAGGTTGAAAGGGTTGATGTCCAATTGAGCAGCGAATGGACTATAAACTAGAGACTCTTGGGCCGTTCTATTCCTGCTGTTTTAATTCCAAAGTGGCCTTTAATTTCAGAATGTAATGCTGGAGTTTGGGATTTGCTAACTGCCAGTGTTGAAGACTTGGGTTTATGAAGCAATAATGAAAATACTTTATCTTCTAATTCAGTGGCATTCAGTCCCAGTCATCAAGACACCAACTTCACCCCTTTGCTTTGTGTTTTACCAACTCGTACACATCTGATTTAGCTCTTGAAGGGATTGGTAATGGGCACTTTTGCACCTGAAGACATTTCTTCAATTCCTTTGCACCTTACTGTATACAGTCAGCATGCTCATGTGGTGTTCACACAGGCGAAACATGGGCTAAGTGGGTTCCCATGGACTTTGAATGGAAACCAAGTTGGGCTTCCTAATTTGGCCCCTATTGTTACAGTCAACCTTAATTCATGGACAAAAGTTTATGGTCTAAGTGTCTAAAGTTGGGCTTTTCTTACAAGCCCTACATAGGTATGTTACACGGGCAGTTATTTTGATAATCTATGCAGTACATGGACTGGAACAGTTCTTAACCAAAGACATTCCATTGCTTCTAGTGACCAAAGAAATAACCAACATGCAAGAACCTTCACAGCAGTGCTAGAAGGTCTTATTTTCTGTGTTGTCTCTTCTTGTATAATTCTAAAACaagcttttttttacatagagtTGCTTTGCAAAGATTTGAGAGTACAAGAACGTAGTTTGTGGATGAAGTTTTGGGTCTGACACAAACCAAATGTGGAAGGAATCTATTGGTACATAATGGATGATTGTCGTTTTTTTGGAAGTTTAATAGGATAATAATAACGATGACAGTTGACAGTTGACAGTTCACTTTGGATGTCATGAATGTTGTATATGAGTTACAGTATGTACAAAGTTGATGTGAGCTGGTGTTTAAACAAGGGATTATGGCActatgcttttcttttttcgAGTGCAAACCATATGGACAATGCTGGTGACTTGCAATTTAACCGAAAACTCTGCAATATACTGTTTACATGCCTATGTGTCTGTATATACTGATGATTTTACCATTCACAATGcttaaaatatgcaaaaaatacaagGTAAAGCGTTATCGGGAGAATATAGAACTGAGTCTAGAGGCTTGCATACTGAATTACGTCATGTAAactgtagaaataaaaaaaaaa

Function

GO: NA

KEGG:

id description
K21112 SYNPO; synaptopodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671945.1 True 5844 mRNA 0.49 5 2500988 2535981

Neighbor

gene id symbol gene type direction distance location
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding downstream 11992 2435680 ~ 2488996 (-)
LOC103026956 ctnna1 coding downstream 280624 1998156 ~ 2220364 (-)
LOC103041113 ppt2 coding downstream 1495111 988446 ~ 1005877 (-)
rps5 rps5 coding downstream 1518385 975095 ~ 982603 (-)
LOC111193040 NA coding downstream 1562804 932017 ~ 938184 (-)
dctn4 dctn4,LOC107749746 coding upstream 125530 2661511 ~ 2678905 (-)
anxa6 anxa6,LOC107750364,LOC107594885 coding upstream 228164 2764145 ~ 2816535 (-)
rmnd5b rmnd5b,LOC105026275,LOC100306854,LOC106612137 coding upstream 422668 2958649 ~ 2982646 (-)
LOC103025117 NA coding upstream 446066 2982047 ~ 3019753 (-)
LOC103047641 c14h5orf24,LOC108439806,LOC107594921,LOC107668575,LOC107749736 coding upstream 487438 3023419 ~ 3027693 (-)
G70632 NA non-coding downstream 45524 2424036 ~ 2455464 (-)
G70629 NA non-coding downstream 66086 2419559 ~ 2434902 (-)
G70628 NA non-coding downstream 97123 2403411 ~ 2403865 (-)
G70624 NA non-coding downstream 116821 2381317 ~ 2384167 (-)
G70605 LOC108436838 non-coding downstream 141759 2358811 ~ 2359229 (-)
G70662 NA non-coding upstream 33906 2569887 ~ 2616400 (-)
G70666 NA non-coding upstream 102581 2638562 ~ 2703705 (-)
G70672 LOC108415088 non-coding upstream 137158 2673139 ~ 2701134 (-)
G70673 NA non-coding upstream 221162 2757143 ~ 2757834 (-)
G70691 NA non-coding upstream 230624 2766605 ~ 2766880 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other downstream 1465972 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 168214 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 744175 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 908114 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 1039580 3575561 ~ 3703751 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other upstream 1200645 3736626 ~ 3848624 (-)

Expression


Co-expression Network