LOC103025734 (LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883)


Basic Information

Item Value
gene id LOC103025734
gene name LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2828409 ~ 2854104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671953.1
AGGAGAGTAAACAGAGAAGCTGGATATATTTACCATAGGAGCAGCCTGCAGCAGCATCCGGAGAAGagtaaagaaaagaagaaagaatgaCTCCAAGATTATCTGAGCTCAGAAACCTGAAAGCATGAACACTGAGTGACAGGCAATGTCATATCGCAGAGTTACGATAAAGCGATCTGCTGCAGTGAGGACTTTTCAAAGGGCTTAAGAATGACCCATCACGTCTTTTCCGTCTCAGACACGCGTGCTGGAGCTGAGGATCGAGCACAGCTGATCATGAGTGGACAGAAGATTTGTGCGTTTCTGCGAGGGCTCTCCCGCAGGAAGCCCCTGGAGCCCGAGGGCGAGGTGTCCACGTTCCGCCGCTGTCTGAGCACGGTGGACCTGGTGGCTCTGGGCGTGGGCAGCACGCTCGGCGCTGGAGTTTATGTGCTGTCCGGTGAAGTTGCCCGGTCGCTGTCCGGCCCCAGCATCATCATCTCCTTCCTCATCGCTGCTCTGGCCTCCATATTCGCCGGCCTGTGCTACGCCGAGTTCGGCTCCAGAGTGCCCAAGACCGGCTCGGCGTATCTCTACAGCTACGTCACCGTGGGGGAGGTGTGGGCCTTCATCACCGGGTGGAACCTGCTGCTGTCCTACGTCATAGGCGCCTCCAGCGTGGCCCGAGCTTGGAGCGGCACCTTTGATGACCTCATTGGAAATGTGATGGCGAATTACTTCAGCAAACACGCCGCCATGGGGCTGCCTGGCCTGGCTCCTTACCCAGACATCTTTGCAGCTGGCCTCATCATGCTTCTCACTGGGCTCCTTGCTTTTGGAGTAAAAGAGTCAACCACAGTCAACAAGATTTTCACCAGTGTTAATATACTGGTGCTGGTGTTCGTCATCATCTCCGGCTTCATTAAGGGGAACCTGGCCAACTGGAACATCACTGAGACAACCTTGCTGAATGTGACAGCAGAACTGGAAAACGTGACATTCTCGCTGAACGTGACCTCCGAGTTCGGGGTCGGTGGGTTCTTCCCGTACGGGTTTGAGGGCACTCTGGCCGGAGCTGCGACGTGTTTCTACGCATTCGTGGGGTTTGACTGCATTGCAACTACAGGGGAGGAGGTGAAGAACCCTCAGAAGTCCATCCCTCTGGGGATCGTCTTCGCTCTGCTGATCTGTTTCCTGGCGTATTTCGGCGTGTCAGCTGCTCTCACTCTGATGATGCCGTACTACCTGCTCAACATCCACAGCCCTCTGCCCGTCGCTTTCTCCTATATAGGCTGGTCTGCGGCCAAGTATGTGGTGGCTGTGGGATCCCTGTGTGCTCTTTCTACCAgTCTCCTGGGTGCCATGTTCCCGATGCCTCGAGTGATATTTGCTATGGCCAGAGACGGCCTCCTCTTTAAAGTGCTGTGTAGAGTCAGCGCAAGGAAGAGCCCGGTGGCAGCAACTGTCGCTTCTGGATCCATAGCAGCAATAATGGCACTGTTATTCGACCTGAAGGCACTGGTTGATATGATGTCTATTGGAACGCTCTTCGCCTACACGCTGGTGGCCATCTGTATTCTCATACTCAGGTATCAGGAGATGGAGTCTGCAGACAATGATGTTCACATCACACAGACCTCCGCGTTCGAAATATTAaaacctccctctctccccacCAAAAAAACCTCCAACACCGTCACCGGATGTACCATATTCATCAtctttCTGGTGTTGATTCTGACAGTACTGTTGAGTAAGGGGATCagggatctgctgctgctggaggtttgggttctggtgtgtgtgtctgttataCTGTTCCTGATAGTGGTCAGCGTTCTGCTGATCTGGAGACAGCCGCAGAACCCCAGCAAAGCCACCTTCAtggtaccTTTCCTGCCTTTACTCCCTGTGGTGAGTGTGTTCATTAACACCTATCTGATGGTTCAGCTGGGAGGGGACACATGGATCCGCTATGCTGTCTGGATGGCTGTGGGACTTCTGATCTACTTCGGCTACGGCGTGAGGAACAGTGTGCAGAAACAGAGGCTGCTGggaaacatcatcatcatcgaaACCACTGAGACCAAACCTGAGAAAGAGGAGACCAAAGGAGGAGAAAGCACCGCCTCCAAGAGTTAAACCCCTCCCACCGGCCAGCGTTCACCAATCAGCATCAACCCTCAACTCTTATATCTCTAATATCACTTCATCTACTTTAATCACATTCCACTGTAAAGATGATAAATATgtgcttgtattttttatacctgtttttgtaatgtttccTGTCATTTTATAACATAGACCTAATGTC
>XM_022671954.1
AGGAGAGTAAACAGAGAAGCTGGATATATTTACCATAGGAGCAGCCTGCAGCAGCATCCGGAGAAGagtaaagaaaagaagaaagaatgaCTCCAAGATTATCTGAGCTCAGAAACCTGAAAGCATGAACACTGAGTGACAGGACACGCGTGCTGGAGCTGAGGATCGAGCACAGCTGATCATGAGTGGACAGAAGATTTGTGCGTTTCTGCGAGGGCTCTCCCGCAGGAAGCCCCTGGAGCCCGAGGGCGAGGTGTCCACGTTCCGCCGCTGTCTGAGCACGGTGGACCTGGTGGCTCTGGGCGTGGGCAGCACGCTCGGCGCTGGAGTTTATGTGCTGTCCGGTGAAGTTGCCCGGTCGCTGTCCGGCCCCAGCATCATCATCTCCTTCCTCATCGCTGCTCTGGCCTCCATATTCGCCGGCCTGTGCTACGCCGAGTTCGGCTCCAGAGTGCCCAAGACCGGCTCGGCGTATCTCTACAGCTACGTCACCGTGGGGGAGGTGTGGGCCTTCATCACCGGGTGGAACCTGCTGCTGTCCTACGTCATAGGCGCCTCCAGCGTGGCCCGAGCTTGGAGCGGCACCTTTGATGACCTCATTGGAAATGTGATGGCGAATTACTTCAGCAAACACGCCGCCATGGGGCTGCCTGGCCTGGCTCCTTACCCAGACATCTTTGCAGCTGGCCTCATCATGCTTCTCACTGGGCTCCTTGCTTTTGGAGTAAAAGAGTCAACCACAGTCAACAAGATTTTCACCAGTGTTAATATACTGGTGCTGGTGTTCGTCATCATCTCCGGCTTCATTAAGGGGAACCTGGCCAACTGGAACATCACTGAGACAACCTTGCTGAATGTGACAGCAGAACTGGAAAACGTGACATTCTCGCTGAACGTGACCTCCGAGTTCGGGGTCGGTGGGTTCTTCCCGTACGGGTTTGAGGGCACTCTGGCCGGAGCTGCGACGTGTTTCTACGCATTCGTGGGGTTTGACTGCATTGCAACTACAGGGGAGGAGGTGAAGAACCCTCAGAAGTCCATCCCTCTGGGGATCGTCTTCGCTCTGCTGATCTGTTTCCTGGCGTATTTCGGCGTGTCAGCTGCTCTCACTCTGATGATGCCGTACTACCTGCTCAACATCCACAGCCCTCTGCCCGTCGCTTTCTCCTATATAGGCTGGTCTGCGGCCAAGTATGTGGTGGCTGTGGGATCCCTGTGTGCTCTTTCTACCAgTCTCCTGGGTGCCATGTTCCCGATGCCTCGAGTGATATTTGCTATGGCCAGAGACGGCCTCCTCTTTAAAGTGCTGTGTAGAGTCAGCGCAAGGAAGAGCCCGGTGGCAGCAACTGTCGCTTCTGGATCCATAGCAGCAATAATGGCACTGTTATTCGACCTGAAGGCACTGGTTGATATGATGTCTATTGGAACGCTCTTCGCCTACACGCTGGTGGCCATCTGTATTCTCATACTCAGGTATCAGGAGATGGAGTCTGCAGACAATGATGTTCACATCACACAGACCTCCGCGTTCGAAATATTAaaacctccctctctccccacCAAAAAAACCTCCAACACCGTCACCGGATGTACCATATTCATCAtctttCTGGTGTTGATTCTGACAGTACTGTTGAGTAAGGGGATCagggatctgctgctgctggaggtttgggttctggtgtgtgtgtctgttataCTGTTCCTGATAGTGGTCAGCGTTCTGCTGATCTGGAGACAGCCGCAGAACCCCAGCAAAGCCACCTTCAtggtaccTTTCCTGCCTTTACTCCCTGTGGTGAGTGTGTTCATTAACACCTATCTGATGGTTCAGCTGGGAGGGGACACATGGATCCGCTATGCTGTCTGGATGGCTGTGGGACTTCTGATCTACTTCGGCTACGGCGTGAGGAACAGTGTGCAGAAACAGAGGCTGCTGggaaacatcatcatcatcgaaACCACTGAGACCAAACCTGAGAAAGAGGAGACCAAAGGAGGAGAAAGCACCGCCTCCAAGAGTTAAACCCCTCCCACCGGCCAGCGTTCACCAATCAGCATCAACCCTCAACTCTTATATCTCTAATATCACTTCATCTACTTTAATCACATTCCACTGTAAAGATGATAAATATgtgcttgtattttttatacctgtttttgtaatgtttccTGTCATTTTATAACATAGACCTAATGTC

Function

NR:

description
PREDICTED: cationic amino acid transporter 2-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13864 SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671953.1 True 2296 mRNA 0.52 14 2828409 2854104
XM_022671954.1 False 2201 mRNA 0.52 14 2828409 2854104

Neighbor

gene id symbol gene type direction distance location
gpx3 LOC108415088 coding upstream 127275 2690738 ~ 2701134 (+)
LOC103041625 ddah2,LOC108435833,LOC107660989,LOC106570066 coding upstream 1855566 957420 ~ 972843 (+)
LOC103041930 clic1,LOC108274855,LOC107660990,LOC107753388,LOC107708731,LOC107679037,LOC107564667 coding upstream 1915887 899894 ~ 912522 (+)
LOC103042240 LOC103042240 coding upstream 1951005 867909 ~ 877404 (+)
LOC103036550 NA coding upstream 2050403 640691 ~ 778006 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding downstream 3791 2857895 ~ 2866216 (+)
LOC103025421 n4bp3 coding downstream 17472 2871576 ~ 2946729 (+)
LOC103047122 LOC108439803 coding downstream 204420 3058524 ~ 3081939 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding downstream 241780 3095884 ~ 3113634 (+)
ndufb9 ndufb9 coding downstream 493664 3347768 ~ 3353595 (+)
G70678 NA non-coding upstream 48006 2764038 ~ 2780403 (+)
G70680 NA non-coding upstream 52838 2772613 ~ 2775571 (+)
G70676 NA non-coding upstream 64770 2763344 ~ 2763639 (+)
G70660 NA non-coding upstream 70575 2757143 ~ 2757834 (+)
G70643 NA non-coding upstream 123159 2658392 ~ 2705250 (+)
G70706 NA non-coding downstream 13332 2867436 ~ 2867850 (+)
G70715 NA non-coding downstream 14262 2868366 ~ 2868566 (+)
G70720 NA non-coding downstream 24345 2878449 ~ 2878654 (+)
G70722 NA non-coding downstream 30393 2884497 ~ 2884756 (+)
G70717 NA non-coding downstream 31049 2885153 ~ 2885559 (+)
G70604 LOC108436838 other upstream 469180 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 634850 2088920 ~ 2193559 (+)
G70522 NA other upstream 1559005 1268767 ~ 1269404 (+)
G70385 NA other upstream 1822571 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 1973251 845025 ~ 855158 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 267814 3121918 ~ 3292475 (+)
G70846 NA other downstream 523580 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 555566 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 1502961 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 2061709 4915813 ~ 4921820 (+)

Expression


Co-expression Network