LOC103046819 (LOC108439802,LOC107669127,LOC107714775)


Basic Information

Item Value
gene id LOC103046819
gene name LOC108439802,LOC107669127,LOC107714775
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3095884 ~ 3113634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671961.1
gtctctctctctctctctctctctctctctctctcctccactcactcactcactcggaCTTTGCCTGGGCTCAGGATGGCTGTCCAGCTGGAGAACAGATAGACCTGctcctcttctttctttttttgtatcatcctttcttttttcatcCTTTCTTTGTGCACAGTCTGTTTGGACCAGGCTGTTCTACTGACTACTGACCCACCAGCACTCAGCATCCCCTGGACCATCACCATACCTGCCCCACTGCTTTAGAACCCAGAGGacaaaaagaggaggaggaaaaagaaggaggaggaggaggaggaggaggagaagaagggcAGAGGGAGGACGAGACGGTCGCGAGACGTGCACcgccaccacctccaccacagTAGAAAAATGCATAGAAGAAATGATGGGTTTGCATGTTGAGAGAGAGTGCTAAGCTAAGTGGGTTTTGAGGAGGTCCCATTCTTGATAACAAAGCTGCATGCAGGCCTCTGGAAATATACTCCTATATACTGCTATACTCCTATATAGCCACCTGTATTaaggtgtttgtttgtttataaggCATGCTAGATATGGAGTAATCAAAGTATAGAGTTTATAAGGCATTCTTTTTGGttgtatacatatacatatgcatATATTGGCTAGTTTTTGCACTCCTGCAAATCTCAGGACCAGCACATATCCAGGTCAGTCTCAGGTCTTGCCTTTTTAAACTAGTTCatctagctaattagctagctattATTGCGCCACTGCAGCTGTGTTTAAACTCATTTAACGCAgcaagcaataataataaagagcaggGAGGGAAATAAAAAGTGTGTACTTTGTGCTTGTGCACTCGTGCACTTTGCTATGCATGTTGAGCCAAAGAACTGAGGCACTTTGATGGTGAGCATGTGAGCTTGAGTATGCATGcgtatgtttatttatagtctCCTTCTTTCAGAAGCTTCTataaatgctgctttaaaagaAGCCAGCTGCTGCTAGGGGCCCTGATACACACTGAGACACTATTTTTGTAAGCTGAAGTTGCACAGATATAGATATTTATTGGTAAAGAGGCCTAAAAGCTGGGAAAACTAGGAGGAAAACTAGGAGAAAAACTAGGAAAAGTGGCCTTCCGCTCTTGCAACCTTCCCCAAGATCAAAAGTAGCTTAGCTCACGCTCACTAGGCTTTGAGAATTGGGATAAGGCCTTGTTTGTGGACTCTAGTGGTCTAGTGGTGGCTATAGGGTacgaagaaaaagaaaacacattgttttGTCTGCTTCGGCTGATGTAACAGCCgagtacagtacagcacagtacagtacattaagctacagtgtgctgctgaCTCTAAACAAACTgctgacccaaaaaaaactgctgCTCTGCCAGCCAACAGCACCGCTCGCTCGCACCAGGCAAAACAACAAGTCCACAAAGTCAGGCAGGCAACCGGTGCAGAGATGACGTCAGCATCAGCAACAGCAGCCAGAGACCAGTCCCTTCCACCCCTCGCAGCAAAGATGGCCCGGATGGCACATCACTTCCTGTCCGGCCTGTCCGCCAGGTGCCTCCTGTtcctgtgtgtgctgtgtgctcTGTGTGTGTCTCTGGGTGACGCTGCGTGTGCCGAGGTAGACTCAGATACAGAGGCTGTGGCCGGACAGGACTTTAAACTGGGCTGCATCTCCTGTAAGATGAGAGGAGAGGTGGAAGCCTCAGCTACAGCAGACTGGTTCTTCAAAGCCAGAGGAGAGACTGAGTTTGCACATATCTACTCTTATGACGGTGAGCTGTCCACCATAATAAACGAGCGTTTTGAGGGTCGTGTGAACTGGACGGGCAGCAGAAAGACCACTGACCTGCAGGACGCGTCCATCTACCTCCTCAACGTTACCTTTAATGACTCTGGGGTCTATCAGTGCTTCTTCACTCGGACCCTCAACTACGATTACTATGAGTACGAGACCACAGCCAGCAAATATGTTCATCTCACTGTGGTGCCCAAAGcgACGCGTGGCACGGCCTCCATCGTTTCAGAGATAATGATGTACGTGTCCATCATCGGGCTGCAGCTGTGGCTACTGGTGGAGATGATTTACTGCTACAGAAAGATCGCTGCGGCCGGAGACGAGGCGCTCAGAGCCAGCGCggcGGAGTATTTAGCGATAGCATCGGAGAGTAAAGATAACTGTGCAGGCGTGCAGGTGGCTGAATAACAGAGGTTTTTCCTGCTCTGACCATAATGTGTGGCCAAAACCTGATGTCCACGTCTTCCTTACACCGTCACAAATGTCCAGAATTTCTTGATTTTTGTACTGCCTACTTCTTATCCAATACAGGACTGGCGgagtaaaaaaacaaagccCCCTAAGCCCTGTCCTGTAGCACCCCTGTTGCCACAACTGACCCTAGAGTTGGCTTAGCTGGTGGGATGAAGagtatttgaaaatgaaatgcaCAGACATGTGCCGTGCAGATACACTGCAGGATGGGTGATCAAAAGTGAAATAAGGACTTTAATGTAAAGACTTCCTGTTTGCATGAGTTTATTAACTTCCAATTGCAGCATGACATCAGCATCCCTTCTAACCATGTATATGCTATACCTCATATAGTATAAAGGCGCACATATAAAAGTATGTTATATAGGCTTTGTAATGAAAACTGACTGAATCATGCTTTCCCCACCTTACTGTATGTGCTCATGCAtataggaaaaaaa

Function

NR:

description
PREDICTED: sodium channel subunit beta-1-like

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0007155 cell adhesion biological_process
GO:0043025 neuronal cell body cellular_component
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0043209 myelin sheath cellular_component
GO:0017080 sodium channel regulator activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG:

id description
K04845 SCN1B; voltage-gated sodium channel type I beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671961.1 True 2723 mRNA 0.47 6 3095884 3113634

Neighbor

gene id symbol gene type direction distance location
LOC103047122 LOC108439803 coding upstream 13945 3058524 ~ 3081939 (+)
LOC103025421 n4bp3 coding upstream 149155 2871576 ~ 2946729 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding upstream 229668 2857895 ~ 2866216 (+)
LOC103025734 LOC108439812,LOC108275395,LOC105903016,LOC107749739,LOC107653313,LOC107594883 coding upstream 241780 2828409 ~ 2854104 (+)
gpx3 LOC108415088 coding upstream 394750 2690738 ~ 2701134 (+)
ndufb9 ndufb9 coding downstream 234134 3347768 ~ 3353595 (+)
LOC103043978 NA coding downstream 306606 3420240 ~ 3439155 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding downstream 810338 3923972 ~ 3935104 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding downstream 841374 3955008 ~ 4105963 (+)
LOC103045063 LOC108435620 coding downstream 1018388 4132022 ~ 4215716 (+)
G70779 NA non-coding upstream 38920 3046392 ~ 3056964 (+)
G70742 rmnd5b,LOC106612137,LOC105026275,LOC107653309 non-coding upstream 133774 2958702 ~ 2962110 (+)
G70740 NA non-coding upstream 139702 2954496 ~ 2956182 (+)
G70739 NA non-coding upstream 145979 2947454 ~ 2949905 (+)
G70716 NA non-coding upstream 148784 2946839 ~ 2947100 (+)
G70819 NA non-coding downstream 160961 3274595 ~ 3276522 (+)
G70820 NA non-coding downstream 179825 3293459 ~ 3322968 (+)
G70821 NA non-coding downstream 191899 3305533 ~ 3306021 (+)
G70848 NA non-coding downstream 285709 3399343 ~ 3458582 (+)
G70859 NA non-coding downstream 346321 3459955 ~ 3460502 (+)
G70604 LOC108436838 other upstream 736655 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 902325 2088920 ~ 2193559 (+)
G70522 NA other upstream 1826480 1268767 ~ 1269404 (+)
G70385 NA other upstream 2090046 1005483 ~ 1005838 (+)
LOC111193067 NA other upstream 2240726 845025 ~ 855158 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other downstream 8284 3121918 ~ 3292475 (+)
G70846 NA other downstream 264050 3377684 ~ 3378610 (+)
LOC111193071 NA other downstream 296036 3409670 ~ 3574758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 1243431 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 1802179 4915813 ~ 4921820 (+)

Expression


Co-expression Network