LOC103043978


Basic Information

Item Value
gene id LOC103043978
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3420240 ~ 3439155 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671973.1
agaaaACAGGCAgcgagagagataaagagaaagaaaaagagagatgaagagaaaaaaaacaaaaagaaagggAAAGGTGGAGCATGATGTAGGCATGATAACATATGtttgtcttgtgtgtgtgtgtgtgtgtgtttaggatgAGTTCCTCTGATGAAAAAGAGATGGACACAGAAAGGGGGAGACCAGTTCAGAGAACGATATCTGCCTCATCTGGATCCAGCAGTGTATCTTTTAAGAGTGATCAGTCAGAGGACAGACCATTTCAGAGAAAGAGATCTGCCACATCTgaatccagctgtgtgtctatgaaaAGTGATCAGGATGACTCTCCTGAGAACAGACCAGTTCAGAGATCTGCTTCATCTGAATCCAGCTGTGTATCTATGAAGAGTGATCAGTCAGTGGGCAGAATAATAACCTTCGGTGACAGACCAGTTCAGAAAAAGACATGTCCCTCTCCTGAATTCAGCTGTTTGTCCATGAAGAGTGACCAGTCAGTGTACAGATTAATAACTTTCAGTGACGACTCTACTGAAAACAGAGGAGTCCAGAGGGAGGGGTCAGAAATACCTGGGAGAAATATGGAGACCTcagtacagAACCTGGATTACCCATCATACCCTGGGGATGTGCCAGTGGGTGGTGACGACACATTGCATGCCTTTGGAGACAGGATGAAACAGGATGACCTCGCTACTACATCGCAAACCACACTGGCTCTTTCTTGCCATCAAAAACTCAAATTCACGCTGGGGGAAAAATGTCAGAAACTTACTGAAGGAATCCTAAAAACTGGATCTTTAGTACATTTGCATGAGATCTACACAGAGCTGTACATTGTAGAGGAAGGCAGTGACGAGGCCAATAAAGAACATGAAGTGAGCCAGATTGAAGCAGCATCCAGGAGACGAGATACACAGGAAATACCCATCAAATGCAATGACATcttaaaacacaaagacaagGTTATCAGAACTGTGCTGACtaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctAGACTGGGCTGAGGGAACAGCTAATCAGGACGTGCTCTTCATCtttccacttccttttagaAAGCTGAATTTGATAAAAGAGGAAAAACTCAGTCTGGTGAATCTTCTACATCGTTTTTTTACGGACACAAAGAATTTAAAACCAGAGGAATTTCATCACAACAAAGTCCTGTTCAtctttgatggtctggatgagtgTAGACTTCCTCTAGATTTCCAGAACAGTGAGAGTGTATCTGATGTAACACAGTCAGCTTCAGTGGATGTGCTCCTGACAAACCTTATCAAGGGGAAGTTGCTTCCTTCCGCTCTTATATGGATAACAACTCGACCAGCAGCAGCTGATCAGATCCCTGCTGACTGTATTAACCAGGTAACGGAGATACGAGGGTTCAGTGACCTTCAGAAGGAAGAATACTTCAGGAAAAGGTTCAGGGAGGAGCATGTTGCAGAAAGAATCATCACCCACCTCAAGTCCTCAAGAAGTCTCTATATCATGTGCCACATCCCAGTCTTCTGTTGGATTACAGGCAGTGTTTTAGAGAGGATTCTGGGGGAATCTGAGATATCAGAGATCCCCAAGACTCTGACTGAAATGTTCACACAATTCATTGTGTTTCAGATCAAACACAGCAGGAAAAAGTACCAAGAAAAAGGAGATGTAGATCATGAGCAGGCTAGAGAGATTATCCTGGCTCTGGGAAAACTGGCTTTCCAACAGTTGGAAAAAGGCAACCTGATCTTCTATGAGGAAGACCTGATAAAATGTGGTATTGACGTCAGAGAGGCGTCTGTATACTCAGGTGTTTGCACCCAGATCTTTTGGGAAGAGTCTGTGCTACACTTGGGAAGGGTTTTCAGCTTTGTGCATCTGAGTGCTCAGGAGTTTTTGGCTGCCTTGTATGTCATTCTATCATTCATCTTCAAAAACAAGAATGTGTTGCAAAGGCAACACTTCCCCACAAAGTCAACACTGTCTGATGTCCTCAAGTGTGCCGTGGACAAGGCCTTGGAAAGTGAGACCGGACACCTGAACTTGTTCCTCCGCTTCCTTTCAGGCCTCTCGTTAGAATCCAATCAGACTATCTTACAAGGTCTCCTGTCCCAGAGAGTAAGCACCTCTCACAATACAGAGGAAATTATCAAATACATCAAGGATAAAACCTGTGAGACCACTCCAGAGAAAACAATAAATCTGTTCCACTGtttgaatgaactgaatgatcaCTCTCTGCAGCAGAAAGTCCAGTCATATGTAAACAAGGAAACTATTGGTGGTTCTTGTGATCCTAAGTTCTGTCCTGGGCAGTGGTCAGCTTTGGCATTCATAATGCTGAATTCTGAAAATCAGCTGGAAGAATTTGACTTGAGGAGGTATCACCAATCAGAGGAGTGTCTTCTAAGGTTGCTGCCAGTGATTCGAACATGCAGAAATGTTATACTGCGTAAGTGTAATCTGACAGGGAAAAGCTGTGCtgctctggcttcagctctCAGCTCAAACTCCTCATGTATAAGGGAGCTGGACCTGAGTTACAATAAGCtccaggattcaggagtgaagctcCTCTGTgatggactgaagagttcacagtgTAAACTAGAGAAACTGGGGCTGGAATGCTGCAGTCTTGGAAAGGAAGGCTGTACAGCTCTGACTGCAGCTCTGACATCAAACCCCACACACCTGCAAGAGCTCAATATAAAGCACAATAAACCAGGAAATTCTGGAGTTAAGCTGCTCCAAACTCTGGTGGAGGATCCACAATGTAAATTGGATAAATTACTGATAGATTAGGTTGTTAACATTGTGTTTCTTTAAACATACACTAAGCATTAAGCATAACTGTTGGGTAACAAagtacaaatattgtcaaatcTTAGAtcttgtctgtcttgtgttttttttttcctttttttttgctctttctgttttatgtcttttcctgtctgcttgtttttttcagccatgTGCTCTTTAGCTTTAGTTTCTATCTTGTTTCTTCCCTTGGCTCTGCCCTAGTCATTAGTGTTTCCACCTGTCTTGTCACCTGTTACCCCACATCCTCGTTAATAGCCCCAGTTGTTTCCAGTCACTCAGTGTgtatattacataatattacattacatttggaagACGATGTTGTGCAAAGCCACTTACAATGATTTACATAATGATGTACATAGAGTAATGAAAGTTCAagataaaaaacatgtttagacagggcctaaaggaggccaaattgaaatagtgggatagaagAGTAAAGGAGGGGGAGCAGGAAATAAAGTTAGAAGTAGTTTTGTAAAGTAGGTTTGTAGGTTAATATGtcagaggtgttaggagagtaagtgctctttgaagagctcagtcttcaggagtttcttaaagatagtgagagattctcctgatctggtagtagaagCTTCGGCCCTGACTTTGGGACCACTAGCCGAAGCTGATCGTCAGATCTTAGGGACTGAACGAGAACATAAGGCATGAACATTTTGCATCAACTATAACTTAGTAACCAATGTGTAAATAGCACCAATGTACAGTGAGTTACAATAATAGATCCTTGTGGAAATAAATGCATGACTTAACATCTTTATCTCAAAgtcagagaaagacaaaaaagcttagcttagctttggaTAGCTGTGGATAGCTGAGGTCTGAGTAAAGGTTTACCAATGGCGTAGGTTTCATTGGTGATTACATGGCCAAGGTCTCTCCAGGCCAAATAAGATAATTTCTGTCTTGGCCTCGTTaagatttaaaaagtttaaagccGTCTGTGCCTTTTATTTCCTCGAGGCAGCTCAGTAGATTGCCCACCATCTAAGCCATCTGTCGACTAATTGCCATTGTTTGCATTGGTGTCTTGAAATATAAATCTGCACTGCTACAGCCTGAAAATTAGCATGCCAGTGATCAAAATTGGTATGCTAGAGATTTTGAGAGACAGTTTTAGTGCTCTTAATATACATACCTATTTACTGTATGCCagcattacatttttcatgttttatgtgTATGATATTAACAGTCATATAATTGCATGATGTATTTGTAATTACATCCTGGGCTTTCATATAATGTACATTTTCTTGTAAAATTGACTTATTAGTTCAGTAATTTTACAttgattctgtttttttcaacattgactcaatgttatgttatttttatgtatttgcaTTAAACTTTAATTTGTCTATGTCAACGGATTTTGGTCCAAGTGATTTTGGAGCGTTtcttggtccattcatcatgaatgTTTGACACCATGTACAAGGCatttaaactttttacatttgtttttgttgcaACCTTTTGCTGAATAaaaagagtggcataaagttatccaaaagcagt
>XM_022671974.1
ACGAAAGTAAACACTGGATAAAGAGATCACGAGGAGAAGCTGAACAAACAGgatgAGTTCCTCTGATGAAAAAGAGATGGACACAGAAAGGGGGAGACCAGTTCAGAGAACGATATCTGCCTCATCTGGATCCAGCAGTGTATCTTTTAAGAGTGATCAGTCAGAGGACAGACCATTTCAGAGAAAGAGATCTGCCACATCTgaatccagctgtgtgtctatgaaaAGTGATCAGGATGACTCTCCTGAGAACAGACCAGTTCAGAGATCTGCTTCATCTGAATCCAGCTGTGTATCTATGAAGAGTGATCAGTCAGTGGGCAGAATAATAACCTTCGGTGACAGACCAGTTCAGAAAAAGACATGTCCCTCTCCTGAATTCAGCTGTTTGTCCATGAAGAGTGACCAGTCAGTGTACAGATTAATAACTTTCAGTGACGACTCTACTGAAAACAGAGGAGTCCAGAGGGAGGGGTCAGAAATACCTGGGAGAAATATGGAGACCTcagtacagAACCTGGATTACCCATCATACCCTGGGGATGTGCCAGTGGGTGGTGACGACACATTGCATGCCTTTGGAGACAGGATGAAACAGGATGACCTCGCTACTACATCGCAAACCACACTGGCTCTTTCTTGCCATCAAAAACTCAAATTCACGCTGGGGGAAAAATGTCAGAAACTTACTGAAGGAATCCTAAAAACTGGATCTTTAGTACATTTGCATGAGATCTACACAGAGCTGTACATTGTAGAGGAAGGCAGTGACGAGGCCAATAAAGAACATGAAGTGAGCCAGATTGAAGCAGCATCCAGGAGACGAGATACACAGGAAATACCCATCAAATGCAATGACATcttaaaacacaaagacaagGTTATCAGAACTGTGCTGACtaaaggagttgctggaattggaaaaacagtctctgtgcagaagttcattctAGACTGGGCTGAGGGAACAGCTAATCAGGACGTGCTCTTCATCtttccacttccttttagaAAGCTGAATTTGATAAAAGAGGAAAAACTCAGTCTGGTGAATCTTCTACATCGTTTTTTTACGGACACAAAGAATTTAAAACCAGAGGAATTTCATCACAACAAAGTCCTGTTCAtctttgatggtctggatgagtgTAGACTTCCTCTAGATTTCCAGAACAGTGAGAGTGTATCTGATGTAACACAGTCAGCTTCAGTGGATGTGCTCCTGACAAACCTTATCAAGGGGAAGTTGCTTCCTTCCGCTCTTATATGGATAACAACTCGACCAGCAGCAGCTGATCAGATCCCTGCTGACTGTATTAACCAGGTAACGGAGATACGAGGGTTCAGTGACCTTCAGAAGGAAGAATACTTCAGGAAAAGGTTCAGGGAGGAGCATGTTGCAGAAAGAATCATCACCCACCTCAAGTCCTCAAGAAGTCTCTATATCATGTGCCACATCCCAGTCTTCTGTTGGATTACAGGCAGTGTTTTAGAGAGGATTCTGGGGGAATCTGAGATATCAGAGATCCCCAAGACTCTGACTGAAATGTTCACACAATTCATTGTGTTTCAGATCAAACACAGCAGGAAAAAGTACCAAGAAAAAGGAGATGTAGATCATGAGCAGGCTAGAGAGATTATCCTGGCTCTGGGAAAACTGGCTTTCCAACAGTTGGAAAAAGGCAACCTGATCTTCTATGAGGAAGACCTGATAAAATGTGGTATTGACGTCAGAGAGGCGTCTGTATACTCAGGTGTTTGCACCCAGATCTTTTGGGAAGAGTCTGTGCTACACTTGGGAAGGGTTTTCAGCTTTGTGCATCTGAGTGCTCAGGAGTTTTTGGCTGCCTTGTATGTCATTCTATCATTCATCTTCAAAAACAAGAATGTGTTGCAAAGGCAACACTTCCCCACAAAGTCAACACTGTCTGATGTCCTCAAGTGTGCCGTGGACAAGGCCTTGGAAAGTGAGACCGGACACCTGAACTTGTTCCTCCGCTTCCTTTCAGGCCTCTCGTTAGAATCCAATCAGACTATCTTACAAGGTCTCCTGTCCCAGAGAGTAAGCACCTCTCACAATACAGAGGAAATTATCAAATACATCAAGGATAAAACCTGTGAGACCACTCCAGAGAAAACAATAAATCTGTTCCACTGtttgaatgaactgaatgatcaCTCTCTGCAGCAGAAAGTCCAGTCATATGTAAACAAGGAAACTATTGGTGGTTCTTGTGATCCTAAGTTCTGTCCTGGGCAGTGGTCAGCTTTGGCATTCATAATGCTGAATTCTGAAAATCAGCTGGAAGAATTTGACTTGAGGAGGTATCACCAATCAGAGGAGTGTCTTCTAAGGTTGCTGCCAGTGATTCGAACATGCAGAAATGTTATACTGCGTAAGTGTAATCTGACAGGGAAAAGCTGTGCtgctctggcttcagctctCAGCTCAAACTCCTCATGTATAAGGGAGCTGGACCTGAGTTACAATAAGCtccaggattcaggagtgaagctcCTCTGTgatggactgaagagttcacagtgTAAACTAGAGAAACTGGGGCTGGAATGCTGCAGTCTTGGAAAGGAAGGCTGTACAGCTCTGACTGCAGCTCTGACATCAAACCCCACACACCTGCAAGAGCTCAATATAAAGCACAATAAACCAGGAAATTCTGGAGTTAAGCTGCTCCAAACTCTGGTGGAGGATCCACAATGTAAATTGGATAAATTACTGATAGATTAGGTTGTTAACATTGTGTTTCTTTAAACATACACTAAGCATTAAGCATAACTGTTGGGTAACAAagtacaaatattgtcaaatcTTAGAtcttgtctgtcttgtgttttttttttcctttttttttgctctttctgttttatgtcttttcctgtctgcttgtttttttcagccatgTGCTCTTTAGCTTTAGTTTCTATCTTGTTTCTTCCCTTGGCTCTGCCCTAGTCATTAGTGTTTCCACCTGTCTTGTCACCTGTTACCCCACATCCTCGTTAATAGCCCCAGTTGTTTCCAGTCACTCAGTGTgtatattacataatattacattacatttggaagACGATGTTGTGCAAAGCCACTTACAATGATTTACATAATGATGTACATAGAGTAATGAAAGTTCAagataaaaaacatgtttagacagggcctaaaggaggccaaattgaaatagtgggatagaagAGTAAAGGAGGGGGAGCAGGAAATAAAGTTAGAAGTAGTTTTGTAAAGTAGGTTTGTAGGTTAATATGtcagaggtgttaggagagtaagtgctctttgaagagctcagtcttcaggagtttcttaaagatagtgagagattctcctgatctggtagtagaagCTTCGGCCCTGACTTTGGGACCACTAGCCGAAGCTGATCGTCAGATCTTAGGGACTGAACGAGAACATAAGGCATGAACATTTTGCATCAACTATAACTTAGTAACCAATGTGTAAATAGCACCAATGTACAGTGAGTTACAATAATAGATCCTTGTGGAAATAAATGCATGACTTAACATCTTTATCTCAAAgtcagagaaagacaaaaaagcttagcttagctttggaTAGCTGTGGATAGCTGAGGTCTGAGTAAAGGTTTACCAATGGCGTAGGTTTCATTGGTGATTACATGGCCAAGGTCTCTCCAGGCCAAATAAGATAATTTCTGTCTTGGCCTCGTTaagatttaaaaagtttaaagccGTCTGTGCCTTTTATTTCCTCGAGGCAGCTCAGTAGATTGCCCACCATCTAAGCCATCTGTCGACTAATTGCCATTGTTTGCATTGGTGTCTTGAAATATAAATCTGCACTGCTACAGCCTGAAAATTAGCATGCCAGTGATCAAAATTGGTATGCTAGAGATTTTGAGAGACAGTTTTAGTGCTCTTAATATACATACCTATTTACTGTATGCCagcattacatttttcatgttttatgtgTATGATATTAACAGTCATATAATTGCATGATGTATTTGTAATTACATCCTGGGCTTTCATATAATGTACATTTTCTTGTAAAATTGACTTATTAGTTCAGTAATTTTACAttgattctgtttttttcaacattgactcaatgttatgttatttttatgtatttgcaTTAAACTTTAATTTGTCTATGTCAACGGATTTTGGTCCAAGTGATTTTGGAGCGTTtcttggtccattcatcatgaatgTTTGACACCATGTACAAGGCatttaaactttttacatttgtttttgttgcaACCTTTTGCTGAATAaaaagagtggcataaagttatccaaaagcagt

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671973.1 True 4418 mRNA 0.41 11 3420477 3439155
XM_022671974.1 False 4330 mRNA 0.41 12 3420240 3439155

Neighbor

gene id symbol gene type direction distance location
ndufb9 ndufb9 coding upstream 66645 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 306606 3095884 ~ 3113634 (+)
LOC103047122 LOC108439803 coding upstream 338301 3058524 ~ 3081939 (+)
LOC103025421 n4bp3 coding upstream 473511 2871576 ~ 2946729 (+)
LOC103021672 LOC108439811,LOC107749774,LOC107653301,LOC107594902 coding upstream 554024 2857895 ~ 2866216 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding downstream 484817 3923972 ~ 3935104 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding downstream 515853 3955008 ~ 4105963 (+)
LOC103045063 LOC108435620 coding downstream 692867 4132022 ~ 4215716 (+)
dpy19l4 dpy19l4 coding downstream 867510 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 1418693 4857848 ~ 4884488 (+)
G70820 NA non-coding upstream 97272 3293459 ~ 3322968 (+)
G70821 NA non-coding upstream 114219 3305533 ~ 3306021 (+)
G70819 NA non-coding upstream 143718 3274595 ~ 3276522 (+)
G70779 NA non-coding upstream 363276 3046392 ~ 3056964 (+)
G70742 rmnd5b,LOC106612137,LOC105026275,LOC107653309 non-coding upstream 458130 2958702 ~ 2962110 (+)
G70859 NA non-coding downstream 20800 3459955 ~ 3460502 (+)
G70860 NA non-coding downstream 21543 3460698 ~ 3478336 (+)
G70880 NA non-coding downstream 116361 3555516 ~ 3556070 (+)
G70883 NA non-coding downstream 158929 3598084 ~ 3599084 (+)
G70892 NA non-coding downstream 240847 3680002 ~ 3682460 (+)
G70846 NA other upstream 41630 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 127765 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1061011 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1226681 2088920 ~ 2193559 (+)
G70522 NA other upstream 2150836 1268767 ~ 1269404 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 917910 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 1476658 4915813 ~ 4921820 (+)
G71247 NA other downstream 1517143 4956298 ~ 4980011 (+)
G71249 NA other downstream 1524547 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 2060753 5499908 ~ 5505638 (+)

Expression


Co-expression Network