LOC103042532 (LOC108442489)


Basic Information

Item Value
gene id LOC103042532
gene name LOC108442489
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3862118 ~ 3910529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671977.1
tctctttctctgtgtgcgcgtgtttgtgtgtgtgtgactcgcGGTGGTCGGCGGAAAGGCTCGTGCACAGCTCGTGCgctgaaacatctggaataagAGATTAATCATGCTGCTGGAAACTCTGGTAGTTTGTGTGTTCTCCTTCCTGCTCGGCCCCCGCGTTTGTGTTGGCTACATATTTCAGGCCGTTCAGCTTGGAGAAAAGGAAGAGCTGATCCCCACCACTAAACTAACTGAATGGGTGAGCTCAGCCGGCTCATGTAAGGGACGATGCTTTGAGCTGGTTGAGGCGGAGCCTCCGGGGTGCAGATGTGATAACCTGTGTAAGACCTACTACAGCTGCTGCAATGATTTCGATGAGCAGTGCCTCAAAACTGctggagGTTTTGAATGCAGTGAGGACCGGTGTGGTGAGAACAGAAATGAGGACTATGCGTGTCAGTGTTCAGAAGATTGTCTGGAGAAGGGAGACTGCTGCACAAACTATAAATCACTCTGCAAAGGTGAGAGTCGATGGGTGGAAGGAGAATGTGAGGAGATTCATTCTCCAGAATGTCCAGCAGGTTTTCTGCGTCCTCCTCTGATCATGGTGTCTTTGGACGGATTTCGAGCTTCTTACATGAAGAAAGGGAAATCTGTTCATCCCAACCTGCACAAACTCAGGACATGTGGTACCCACGCCCCTCATATGAGACCAGTGTACCCTTCTAAAACTTTCCCCAACCTCTACACACTGGCTACAGGCCTGTATCCAGAGTCTCATGGTATTGTGGGGAACACAATGCATGACCCGGTGTTTAATGCAAACTTTAACTTGCGTGGGAGAGAGAAACTCAACCATCGCTGGTGGGGAGGACAGCCTATCTGGATTACATCAGAGAAACAGGGCGTGAAGGCAGGGACCTTCTTTTGGCCTTGggtGATTCCACTGGAGAGGAGGATCCTCACCATACTGAGATGGCTCCACTTGCCCGATGAGGAAAGGCCGTATGTGTATGCAGTGCACTCAGAGCAGCCTGACACTTTTGGACACAGACTTGGACCCCTCAGTAACGAGTTGGATAACCCCCTGAAGGAAATCGATAACATTATTGGTCAGCTGATGAACGGACTGAAACAGATGAATCTGCATCGCTGTGTGAATGTAATCATTGTGGGGGATCATGGAATGGAGGAGGCCCACTGTGACCGGAAAGAATATCTGAGCTCATATGGACTAAACACTGAGGATTTCACACTCATCCAGGGATCCTCTGGAAGGTTGCGTCCCAAGAACCGTAGCGCACAATATGACCCAAAAGAAATAGTAGCTAACTTAACATGTAAAATGCCTAATCAGCACTTCAAAGCGTATCTGAAGCAGCACCTGCCCAAGCGTCTCCACTACGCTAACAACCGCAGGATAGAAGACATCCACCTGCTCATGGAGAGGAAGTGGCTGGTTGCAATGGCTCCTCCTGAAAACCGAATTCCCGGTAGCTGTCGGTACTTTGGGGATCACGGCTTTGATAACAAAATAAGCAGCATGCGGacAATCTTTATGGGACACGGACCAAGCTTTAACTTCAGAACAGAAGTTCCTCCGTTTGAGAATATTGAGCTTTACAACATAATGTGCGatcTTCTGGGCTTGACTCCGGTCCCTAATAACGGAACTCACGGAAGTCTGAATGCCATGCTGAGAAACCCTCCGTTTACACCTGTACAGCCAGAGGAAGTGACGTCTCCTGAACATATAGATTCTGCTTCCACCTCCACTGCCATCTACAATCTGGGCTGCAGCTGTGATGATGAGaATAAAATTGAGGAAAGTACTCAGGAATTTTCTTCAGAAGGTTCAGGGCTGCCATTAAACAATGCTACCCACCTGCCTTTTGGACGTCCAGCTGTTCTTTTCCAGTCGCAGTACACCTTACTGCAGCACAGCGACTACATCAGCGGCTACAGCTACGAGCTCCACATGCCCCTGTGGACAACGTACACCATGACAGCACAGGCAAACACCAGTGTGGACAGCACTGCTCTCCCGCTGTCTGGCtcagagtgtgtgagagcagacATCCGCGTCGctcctgaacacacacagtCCTGCCAGTCCAGCAGCCAGAATCCTGAGATCATCCGTGGATTTCTTTATCCCCCCGactcctcctcctcttctgaATCCAGATATGAGGCGTCTCTGATCACAAACACAGTGCCCATGTATCGAGCCTTTAAGAggatTTGGAGCTACGTGCAGGAGGTAGTGTTGAAGCGCTACACTGAAGAAAATAATAGCATTAATGTCATCACTGGACCCATATTCGACAACGATTATGATGGGCTAAGAGACACGCTGGAGAAGATAAGAGAGCATGCGGGGGAGGCTGTACCGGTTCCTACTCATTACTATGTGATAATAACACACTGTGAGGGAGAGAATACCACAGTGGAGGAATGCGAGGGGTCTCTGCGAGTGGTCTCCTTCATCCTGCCACACCGCACAGACAACTCAGAGAGCTGCAGCAATTCGGACGAGACGTCCGGCTGGGTTGATGAGATTCTCCGGTTACACACGGCTCGAGTGCGTGACGTGGAGCTTCTGACCGGACTGGACTTCTTCCGCTCAACACCCATGCCCTACACACAGACCCTCACGCTCAAAACCTACATGCACACTTTTGAGGAAGATGTCTAACCTCACAGAGACACAGCAAGAATGGAAACAtggcatcatcatcatcaacatcatctcTCTTTCAACCTCAgtgttctctccctctctcctgtcTCCTTCTACCTGGGTCACATGTCGCTTAggtgtatatttttatacagcATATTTATTGTTCACTTTAAGCAAAATAATAGCAATGATCAGATTTAACACAACTGAACATAAACAGGCTTtccatata
>XM_022671978.1
tctctttctctgtgtgcgcgtgtttgtgtgtgtgtgactcgcGGTGGTCGGCGGAAAGGCTCGTGCACAGCTCGTGCgctgaaacatctggaataagAGATTAATCATGCTGCTGGAAACTCTGGTAGTTTGTGTGTTCTCCTTCCTGCTCGGCCCCCGCGTTTGTGTTGGCTACATATTTCAGGCCGTTCAGCTTGGAGAAAAGGAAGAGCTGATCCCCACCACTAAACTAACTGAATGGGTGAGCTCAGCCGGCTCATGTAAGGGACGATGCTTTGAGCTGGTTGAGGCGGAGCCTCCGGGGTGCAGATGTGATAACCTGTGTAAGACCTACTACAGCTGCTGCAATGATTTCGATGAGCAGTGCCTCAAAACTGctggagGTTTTGAATGCAGTGAGGACCGGTGTGGTGAGAACAGAAATGAGGACTATGCGTGTCAGTGTTCAGAAGATTGTCTGGAGAAGGGAGACTGCTGCACAAACTATAAATCACTCTGCAAAGGTGAGAGTCGATGGGTGGAAGGAGAATGTGAGGAGATTCATTCTCCAGAATGTCCAGCAGGTTTTCTGCGTCCTCCTCTGATCATGGTGTCTTTGGACGGATTTCGAGCTTCTTACATGAAGAAAGGGAAATCTGTTCATCCCAACCTGCACAAACTCAGGACATGTGGTACCCACGCCCCTCATATGAGACCAGTGTACCCTTCTAAAACTTTCCCCAACCTCTACACACTGGCTACAGGCCTGTATCCAGAGTCTCATGGTATTGTGGGGAACACAATGCATGACCCGGTGTTTAATGCAAACTTTAACTTGCGTGGGAGAGAGAAACTCAACCATCGCTGGTGGGGAGGACAGCCTATCTGGATTACATCAGAGAAACAGGGCGTGAAGGCAGGGACCTTCTTTTGGCCTTGggtGATTCCACTGGAGAGGAGGATCCTCACCATACTGAGATGGCTCCACTTGCCCGATGAGGAAAGGCCGTATGTGTATGCAGTGCACTCAGAGCAGCCTGACACTTTTGGACACAGACTTGGACCCCTCAGTAACGAGTTGGATAACCCCCTGAAGGAAATCGATAACATTATTGGTCAGCTGATGAACGGACTGAAACAGATGAATCTGCATCGCTGTGTGAATGTAATCATTGTGGGGGATCATGGAATGGAGGAGGCCCACTGTGACCGGAAAGAATATCTGAGCTCATATGGACTAAACACTGAGGATTTCACACTCATCCAGGGATCCTCTGGAAGGTTGCGTCCCAAGAACCGTAGCGCACAATATGACCCAAAAGAAATAGTAGCTAACTTAACATGTAAAATGCCTAATCAGCACTTCAAAGCGTATCTGAAGCAGCACCTGCCCAAGCGTCTCCACTACGCTAACAACCGCAGGATAGAAGACATCCACCTGCTCATGGAGAGGAAGTGGCTGGTTGCAATGGCTCCTCCTGAAAACCGAATTCCCGGTAGCTGTCGGTACTTTGGGGATCACGGCTTTGATAACAAAATAAGCAGCATGCGGacAATCTTTATGGGACACGGACCAAGCTTTAACTTCAGAACAGAAGTTCCTCCGTTTGAGAATATTGAGCTTTACAACATAATGTGCGatcTTCTGGGCTTGACTCCGGTCCCTAATAACGGAACTCACGGAAGTCTGAATGCCATGCTGAGAAACCCTCCGTTTACACCTGTACAGCCAGAGGAAGTGACGTCTCCTGAACATATAGATTCTGCTTCCACCTCCACTGCCATCTACAATCTGGGCTGCAGCTGTGATGATGAGaATAAAATTGAGGAAAGTACTCAGGAATTTTCTTCAGAAGGTTCAGGGCTGCCATTAAACAATGCTACCCACCTGCCTTTTGGACGTCCAGCTGTTCTTTTCCAGTCGCAGTACACCTTACTGCAGCACAGCGACTACATCAGCGGCTACAGCTACGAGCTCCACATGCCCCTGTGGACAACGTACACCATGACAGCACAGGTGGACAGCACTGCTCTCCCGCTGTCTGGCtcagagtgtgtgagagcagacATCCGCGTCGctcctgaacacacacagtCCTGCCAGTCCAGCAGCCAGAATCCTGAGATCATCCGTGGATTTCTTTATCCCCCCGactcctcctcctcttctgaATCCAGATATGAGGCGTCTCTGATCACAAACACAGTGCCCATGTATCGAGCCTTTAAGAggatTTGGAGCTACGTGCAGGAGGTAGTGTTGAAGCGCTACACTGAAGAAAATAATAGCATTAATGTCATCACTGGACCCATATTCGACAACGATTATGATGGGCTAAGAGACACGCTGGAGAAGATAAGAGAGCATGCGGGGGAGGCTGTACCGGTTCCTACTCATTACTATGTGATAATAACACACTGTGAGGGAGAGAATACCACAGTGGAGGAATGCGAGGGGTCTCTGCGAGTGGTCTCCTTCATCCTGCCACACCGCACAGACAACTCAGAGAGCTGCAGCAATTCGGACGAGACGTCCGGCTGGGTTGATGAGATTCTCCGGTTACACACGGCTCGAGTGCGTGACGTGGAGCTTCTGACCGGACTGGACTTCTTCCGCTCAACACCCATGCCCTACACACAGACCCTCACGCTCAAAACCTACATGCACACTTTTGAGGAAGATGTCTAACCTCACAGAGACACAGCAAGAATGGAAACAtggcatcatcatcatcaacatcatctcTCTTTCAACCTCAgtgttctctccctctctcctgtcTCCTTCTACCTGGGTCACATGTCGCTTAggtgtatatttttatacagcATATTTATTGTTCACTTTAAGCAAAATAATAGCAATGATCAGATTTAACACAACTGAACATAAACAGGCTTtccatata

Function

NR:

description
PREDICTED: ectonucleotide pyrophosphatase/phosphodiesterase family member 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671977.1 True 2900 mRNA 0.49 25 3862118 3910529
XM_022671978.1 False 2888 mRNA 0.49 25 3862118 3910529

Neighbor

gene id symbol gene type direction distance location
LOC103024174 LOC108442487 coding downstream 353122 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 454687 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 515642 3336209 ~ 3346476 (-)
rnf139 rnf139,LOC106569923 coding downstream 526332 3323898 ~ 3335786 (-)
tmem65 tmem65,LOC103374125,LOC100698042,LOC102786671,LOC101476933,LOC104966521 coding downstream 544566 3298210 ~ 3317552 (-)
LOC103026470 LOC108435611 coding upstream 536643 4447172 ~ 4462972 (-)
LOC103041488 NA coding upstream 1047576 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 1051060 4961589 ~ 4975625 (-)
kdm1b kdm1b coding upstream 1104343 5014872 ~ 5046137 (-)
nudcd2 nudcd2 coding upstream 1220073 5130602 ~ 5137613 (-)
G70979 NA non-coding downstream 150981 3690315 ~ 3711137 (-)
G70965 NA non-coding downstream 263034 3598084 ~ 3599084 (-)
G70955 NA non-coding downstream 277477 3515038 ~ 3584641 (-)
G70951 NA non-coding downstream 339731 3459881 ~ 3522387 (-)
G70947 NA non-coding downstream 406894 3454877 ~ 3455224 (-)
G71067 NA non-coding upstream 189701 4100230 ~ 4112464 (-)
G71081 NA non-coding upstream 256857 4167386 ~ 4216646 (-)
G71153 NA non-coding upstream 396172 4306701 ~ 4310021 (-)
G71156 NA non-coding upstream 416542 4327071 ~ 4333955 (-)
G71164 NA non-coding upstream 429017 4339546 ~ 4340305 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 13494 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 158367 3575561 ~ 3703751 (-)
LOC111193045 LOC108442482,LOC102793828 other downstream 403308 3444095 ~ 3458810 (-)
G70924 ndufb9 other downstream 508519 3280156 ~ 3353599 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other downstream 1117046 2704195 ~ 2745072 (-)
G71175 NA other upstream 501419 4411948 ~ 4413011 (-)
G71235 NA other upstream 971641 4882170 ~ 4884488 (-)
trnaw-cca_42 NA other upstream 1013471 4924000 ~ 4924071 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 1561137 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 1919092 5829621 ~ 5841707 (-)

Expression


Co-expression Network