LOC103032643 (deptor,LOC108442483,LOC108274614,LOC107685573)


Basic Information

Item Value
gene id LOC103032643
gene name deptor,LOC108442483,LOC108274614,LOC107685573
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3923972 ~ 3935104 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671979.1
acacacacacacacacacacacccatacacctGACACAGATCTACCCATACACAACCTTCAGACATCTCCGAAACACCACATTTGTGATTTGATGTAACTGGACTGACAGCACAATGGGACCCCGCACGGCAGCTGGGCCATCCAAACAGGAGAAGCTGGTGTCTGGGGGACGTCACGGTAGCAAAAGTGACAGTGACCAAGACGATTCTCCTGTGCTTAATAACCCAAaatcagTGGTGAAAAAACAGGTGAGTCCCGAGGAGCTTCAGAAACCTGGAGGGAAGTACATGAAGAGGATGTTCACGatTGTGGGCGATGCCGTCGGCTGGGGGTTTGTCGTGAGAGGGTCTAGTCCATGTCATATTCAAGCTGTTGATCCCAGCGGACCTGCAGCTGCTGTTGGAATGAAGGTGTGTCAGTTCATAGTGTCTGTAAACGGAGTGAACGTGTTGGAGATGGACTATCGGACAGTCAGTCACCTCATCCTCACCGGTCCTCGCACTGTAGTGATGGAGGTGATGGAGCCCGTCGACTGCTGATGATACCGCTGAAGGAGTGACTCTGAAGACCACTGTAAGCTATTCTGATTAAAGGGTTCTAGACTGAACTTCCGCATTCACATCCCGTAAGTCCAGGTGATGCGCTAGGATCATCTAGACTTACTGGAGGATACTGTCTGCAGGATTTGCTCAGCAGGTCTGATACAGAAAGTTCTGGACGTGCAGACCAGTGTCGGAATCGCTCACCGTAACAATCATAATTAGCAGAAAGGGCAGAACTCAATATgcgcagcagcagctgcagctgtAGCCCAGAATCACAATGATACCAGTCATACTTTTTACAGAGAGACTGTGAGCATCTGTAATTAGATTAGAAAGTTTCAAAAATAATGCTCTTATTTGAGGAGCAGGGGTGCAAAAAAAAGTACAAGTACAAAGAAGCTACTTCACAATATGGGGCATGTATATTCTAAATGGGGTGTGGTTCAAAACTGAAAACATTAATGGaggcaataaatacaaaaaatacgtTTCATTAAA

Function

symbol description
deptor Predicted to act upstream of or within intracellular signal transduction; negative regulation of TOR signaling; and negative regulation of protein kinase activity. Orthologous to human DEPTOR (DEP domain containing MTOR interacting protein).

NR:

description
PREDICTED: DEP domain-containing mTOR-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671979.1 True 1044 mRNA 0.47 5 3923972 3935104

Neighbor

gene id symbol gene type direction distance location
LOC103043978 NA coding upstream 484817 3420240 ~ 3439155 (+)
ndufb9 ndufb9 coding upstream 570377 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 810338 3095884 ~ 3113634 (+)
LOC103047122 LOC108439803 coding upstream 842033 3058524 ~ 3081939 (+)
LOC103025421 n4bp3 coding upstream 977243 2871576 ~ 2946729 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding downstream 19904 3955008 ~ 4105963 (+)
LOC103045063 LOC108435620 coding downstream 196918 4132022 ~ 4215716 (+)
dpy19l4 dpy19l4 coding downstream 371561 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 922744 4857848 ~ 4884488 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 994073 4929177 ~ 4935065 (+)
G71019 LOC108442489,LOC108274607,LOC105909062 non-coding upstream 35077 3884338 ~ 3888895 (+)
G71005 LOC108413582 non-coding upstream 79178 3842694 ~ 3844794 (+)
G70986 NA non-coding upstream 155250 3733622 ~ 3768722 (+)
G70997 NA non-coding upstream 157197 3766437 ~ 3766775 (+)
G70995 NA non-coding upstream 174365 3748840 ~ 3749607 (+)
LOC111193074 NA non-coding downstream 21340 3956444 ~ 3960203 (+)
G71048 NA non-coding downstream 59803 3994907 ~ 3995590 (+)
G71052 NA non-coding downstream 154984 4090088 ~ 4090634 (+)
G71073 NA non-coding downstream 216754 4151858 ~ 4154229 (+)
G71075 NA non-coding downstream 254521 4189625 ~ 4192656 (+)
LOC111193071 NA other upstream 349214 3409670 ~ 3574758 (+)
G70846 NA other upstream 545362 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 631497 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1564743 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1730413 2088920 ~ 2193559 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 421961 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 980709 4915813 ~ 4921820 (+)
G71247 NA other downstream 1021194 4956298 ~ 4980011 (+)
G71249 NA other downstream 1028598 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1564804 5499908 ~ 5505638 (+)

Expression


Co-expression Network