LOC103042852 (LOC108274605,LOC108435589,LOC105028044)


Basic Information

Item Value
gene id LOC103042852
gene name LOC108274605,LOC108435589,LOC105028044
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3955008 ~ 4105963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671980.1
ACAGTCTCTCGGACGAGCTGCAGGAGAGGAGCGCGCGAGCACAGCGGCTGCGGGGCTTCACGCGACTGGATGCGCTACACAGGCAGtagatgaggatgaggatgaggatgcaGGCGCGCGGCAGCAGCACGCTCTTCCTCCTGGCGCTGACGTCACTGCTCACCGGACCCACCCAGGGCCAAGtagCTGCTCCGAGGAGATTGCGCTATAAGGAGCTGGGCTCGGGCATGCTCAGTGTGTCGTGGAAGGAGCCGAAAGGAGAGTTTGACAGTTACAGGCTGATCTACAGCTCCGGCTCAGGTGGCTCAGAGAAAGAGGTGCAGGTGACTAAAGAGGAGGCTAAAGCTGTGATAGCAGATTTTGATCACAGTAAAGAATACAGCTTCAGAGTCATCGCCCTCAGCGGCGCTCAGGAGAGTAAACCCTTACTGGGCAGCTATAAAGCAACGAGGTCAGAGGTCAGTGACAGCAGCTCGCAGACTCACAGGGAGAAGCAGAACAGCGAGCCTGAGCAGGACAATGAGATCAGAAAAGTGGATGTGTTTGTATGTAAGACCCCGGCGATAGCTGATATTGTGATTCTGGTGGACGGCTCATGGAGTATCGGCCGTATCAATTTCCGGCTGGTGCGGATGTTCCTGGAGAGCCTGGTGAACGCCTTCTCCGTCAGCTCGGACCAGACTCGCATCGgATTGGCACAGTACAGCGGAGACCCCAGGATTGAGTGgcacctgaacacacactccactAAAGAGGCTGTTATCAACGCTGTGAAGAACCTGCCATATAAAGGAGGAAACACACtaacaggTCTTGCTTTGATGTATATACTGGAGAACAGCTTTAAGCCGGAGTCGGGATCCAGGACGGGCGTTCCGAAAATCGGAATTCTGATCACAGATGGGAAATCTCAGGATGATGTTCAGGGACCTGCTAGGAGTCTGAGGGAGGCGGGGATTGAGCTGTTTGCAATCGgtgtgaagAATGCTGATGAGAACGAGCTGAAGGCGATAGCGTCTCCTCCTGAAGAGACGCATGTGTATAACGTGGCTGATTTCAGTGTGATGAGCTCTATAGTGGAGGGGCTGACCCGGACGGTGTGTGGGCGAGTGGAGCAGCTCAACCGAGAGATCAAAGGAGAAACCGGCCCATCTACAGCTCCTGCCGCTCCCCGCGACCTTGTGACCTCAGAGGTCACTGCCAGGAGTTTCAGAGTGACCTGGACTCACGCCCCCGGCACTGTGGAGAAGTACAGAGTGGTGTATTATGCTTCCAGAGGATCCCAGCCAGAAGAGGTCGTAGTGAATGGTGATGAGAACTCGGTGGTGCTGCAGCATCTCAACTCTCTGACCGAGTATCAGGTGGCCGTGTTCGCTGTCTACAGTAATTCTGCCAGTGAGGCTCTGAGGGGCAGCGAGACCACACtggCTTTACCCATGGTGAATAATCTGGAGCTGAACGACATCACACACAGCAGTATGCGTGTACGGTGGGGAGTTGCAGAAGGGGCTTCTGGGTATATGATCCTGTACGCCCCGCTGACGGAGGCAGACGTATCAGATGAGAAGGAGGTGAAAGTAGCAGACACTGTGACTGAGATTGAGCTGGAGGGTCTCACTCCTGCAACTGAGTACACCGTCACTGTCTACGCCATGTACGGAGACGAGGCCAGTGACCCCAGGACTGGCCAGGAGACAAcccttcctCTGACTCCTGCTCGGAATCTGCGGATCAGTGAAGTGTCTCACAGCTCGGCGAAGCTCACCTGGGAGGCAGCGTCTCGTAAAGTGAATGGATATCGGATCATGTACGTGAAGACTGACGGAGTTCAGACCAACGAGGTTGAAGTGGGACGGATCACCACACTGTTGCTAAGCAACCTCACCTCTCTGACAGAATACACAGTGGCCATCTTCGCCATCTATGATGAAGGGCAGGCCGAGTCTGTTACCGACAGCTTCACCACCAagaCGGTTCCAGCTCCGCAGAGTCTGAGGAGCAGTGATGTGTCTACAGACCGGTTCAGAGTGAGCTGGCAGCACGCGGCATCCGACGTCACACTGTACAAACTCACCTGGACACCTGTCAGAGGAGGAGATACCAGAGAGtCAGTGATTAATGGTAATTTGAACTACTATGTGATTACTGGTCTGATGCCCCTGACGGAATACGAGGTCTCTCTGACAGCCATTTACAGAGACGAGTCAGAGAGTGAGACCATACAGCTCAGCCAGATTACAGCTCAAAGAACAACAACTGTGGCAACCACAACTACCACCACTACTACAGCAGtagtgCGTCTGGGTGTGAGGGGTCTGCAGCTGAGTGATTTCACTACATTCAGCATGGGTGTGTCGTGGGAGCTGCTGCGCTCCACCGGTGTTGGTCAGTACAGAGTGTCCTACATCACAGCGCGTGGAGATCGAGCTGAACAGGTGaTGATGGTTCCTGGTAATCAGAACGCAGTggtgctgcagcctctgctctCTGATACGGAGTACAGGGTGAGTGTGACAGCTGTTTACGCTGATGGAGATGGACCGTCCGTCACTCGCTCTGCTCGCACTTTGCCTCTCTCTGCTCCTAAAAATCTGAGGGTATCAGAGGAATGGTACAATCGCTTCCGCATCACCTGGGACACGCCCCCTTCTCCCACTATGGGCTACAGGATCGTCTACCAGCCAGTCTCAGGGCCGGGTCGAGCTCTGGAGACGTTTGTTGGGGACGACGTGAACACCATGCTGATACTGAACCTGCTGAGTGGCACAGAGTACAGCGTAAAGGTCATCGCCACCTACACCACCGGCTCCAGCGAGGCACTGACCGGCAGAGCCAAGACCCttTACCTGGGTGTGTCTAATCTGAACACCTATCAGGTGAGGATGAACAGTATGTGTGCTCAGTGGCAGCCCCATCGCCATGCCAACCAGTACCGTGTGATCATCGAGTCGCTACTGAATGGTCAGAAGCAGGAAGTGAGGTTGGATGGCTCCGAGTCCAGGCATTGCTTTAACGAGCTGAGACCAGACACTCAGTACAAGATCAGCGTTTACGCCCAGCTGCAGGACACCGAGGGGCCGGCCGTCACCACCATCCAGAAAACATTCCCTGTACCCACCGCTCCACCTACCagaccccccaccaccacccccctgCCCACCATTCCTGTTGCTAAAGAAGtgtGCAGAGCTGCGAAGGCTGATCTGGTGTTCCTGGTTGATGGATCGTGGAGTATCGGTGATGATAACTTTGTGAAAATCATCCGCTTCCTGTACAGCACGGCCGGGGCGCTGGATGATATTGGACCCCGAGGAACGCAGGTGGCCATAGCTCAGTTCAGTGATGACGCTCGCACTGAGTTTAAGCTAAACTCTTACGATGACAAAGAGAGTCTGCTGGACGCCATTCAGAAGATTTCATACAAAGgaggaaacactaaaacagGAAGAGCCATACAGCATGTGAAAGATGCTATCTTCACCGTGGCGGGAGGAAGTAGGCGGGGCGTGCCCAAAGTGCTTGTGGTCCTCACCGACGGACGTTCCCAAGACGACGTCAACAAGATCTCCCAGGAGATCCAGATGGAGGgttaCATTGTGTTTGCGATTGGGTTTGCTGATGCTGATTATGGGGAGTTGGTGAGCATTGCCAGTAAACCCAGTGAAAGACACGTGTTCTTCGTGGATGATCTGGATGCTTTTAAAAAGATAGAGGAGAAGCTCATCACCTTCGTCTGTGAGGCTGCTACAGCAACTTGTCCGTCTGTCCCAATGAGTGGCAGCACACTACCAGGCTTTAGGATGATGGAGATGTTCGGGCTGGTGGAGCACCTGTACAGTAATCTTGAGGGCATTTCATTGGAGCCAGGAACCTTCAACAGCTTCAACAGCTACAGACTGGCCAGCGACGCACTGCTGGCACTGCCTACCAGGTTTATCCACCCCGAGGGTCTGCCGTCTGATTACACCATCACCATGCTGTTCCGCCTGCTGCCCGAAACCCCTCAGGAGCCCTTTGCCTTGTGGGAGATTCTCAACAGCAGGAATGAACCATTAGTGGGCGTCATCCTGGACAATGCAGGAAAGACACTGACGTTCTTCAACAGCGATTATAGGGGTGATTTTCAGACGGTAACATTTGAAGGTCCTGAGATTAAGAAACTTTTCTATGGAAGCTTCCACAAGctgcatATAGCGGTGAGTAAGACGCTGGCTCAGGTGATGGTGGACTGTAACCTGGCTGGAGAAAAACCCATTAATGCTGCTGGAAACATCACTATTGATGGAACGGAGGTTCTGGGCAGGATGGTTCGCTCCAGAGGAGACAAGGACAACTCCGCACCGtttCAGCTGCAGTCGTTTGATATCATATGCAGCACATCGTGGGCTCGTCGAGACAAGTGCTGTGATCTTCCCAGCCTGAGAAAGGAGGCAGACTGCCCGGCTCTTCCTCGGGCCTGCACCTGCACTCAGGACAGTAAAGGCCCCCCCGGCCCCCCGGGACCACAGGGCAGTGTTGGTATCAGAGGAGCGAGGGGGGATCGGGGAGAGCCGGGACCTGTGGGAGCAGTGGGTCCAGTGGGAGATGCTGGATTATCAGGACCCCAGGGACCTCCCGGCCCCCAGGGGCCCAGTGGAAGATCCATCAGAGGCCCACCGggtgccCCAGGGGAGAGGGGGGAGAAAGGTGAGGCAGGACCTCGGGGGACTCAGGGTGTTCCAGGATCATCAGGGTCTCCAGGAAGGGAGGGCCCTCCAGGACCCaggGGTTTACCAGGTAAAGACGGACCGCAGGGCAGAGTGGGTCCCCCAGGCACTATTGGAAGTCCAGGAGCTCCAGGGGCACCAGGTCAGAACGGCCCGCCCGGACCTATTGGAGAGCAGGGACCACCGGGTACCGCAGGCACCAaaggagagaaaggagaaaggGGGGATATGCAGTCTTCGTCTTCAGTACAAGCCATCGCCAGACAAGTGTGTGAACAGCTCATCCAGAGTCACATGGCTCGTTATAACTCCATCCTGAATCAGGTTCCCAGTCAGCCGGTGTCGATCCGCACTGTTGCCGGACCTCCGGGAGAGCCGGGCCGCCAAGGACCACCGGGACAGCAGGGAGAGCAGGGTCCACCCGGGCGGCCTGGGTTCCCTGGATCTAACGGAGAGAACGGCCAACCTGGAGGCAGAGgtCTTCCAGGTGAAAAAGGAGAGAAGGGAAGCCCAGGTGTGGGCGTTCAGGGCCCCAGAGGACCTTCAGGACCTCCAGGGCCACCTGGTGAGGGGAGGACTGGTGGTCCGGGCCCTGCTGGCCGTCCTGGTAACTCTGGGACCCCGGGCAGGCCGGGCATGCCTGGACCAGTAGGACCCGCAGGACCCCCGGGCTACTGTGATCCAAACTCCTGCGGATACAACGTTGGGGAGAGGGAGTTTGACCGTGAAGTGACTGACCGCGATATTCCCATAGTCCAACTGCCACCAAACTCGTACCAAACGTACGGCGCCGAGGAGGAGGGAGGGGAGGAGGACCCCTACGGAAGCTATGGCACGTACCCCTCCTACTACCAGCCCAACTACCCCCAGCCCCGCCCCGTGGAACCGGACGACCCAGTCATGgcggaggagctggaggagctgCGGTCGCCAGGAATACAGCGGCAGACTCGCAGCGTATCGACGTGGAGGCGGGGTCAGAAAAGAAATCCGGAAAAGATCTATTAAcctctattaaataaaaaaattaactctgGTTAACCATTTTTTAAACCCTTAAAGGAATACTCTGTGGCCAAGCAGTCAATAACACAGATTTCCCTTTAATAAATGCAGTCAATCAGCCGAGAAAtgtttggtgtcagaagtggctTTGAGCtgaagctatgaggctaatagGAATCTAGAGCTCAGGAAATTAGCATTGCTAATGTGGGTTATGACACTGATATGCTTTTAGAAAAGTCTGACAGAcataggtggatttgtcccccccccccccc

Function

NR:

description
PREDICTED: collagen alpha-1(XIV) chain-like isoform X2

GO: NA

KEGG:

id description
K08133 COL14A; collagen type XIV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671980.1 True 5989 mRNA 0.55 48 3955008 4105963

Neighbor

gene id symbol gene type direction distance location
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 19904 3923972 ~ 3935104 (+)
LOC103043978 NA coding upstream 515853 3420240 ~ 3439155 (+)
ndufb9 ndufb9 coding upstream 601413 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 841374 3095884 ~ 3113634 (+)
LOC103047122 LOC108439803 coding upstream 873069 3058524 ~ 3081939 (+)
LOC103045063 LOC108435620 coding downstream 26059 4132022 ~ 4215716 (+)
dpy19l4 dpy19l4 coding downstream 200702 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 751885 4857848 ~ 4884488 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 823214 4929177 ~ 4935065 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 837243 4943206 ~ 4954889 (+)
G71019 LOC108442489,LOC108274607,LOC105909062 non-coding upstream 66113 3884338 ~ 3888895 (+)
G71005 LOC108413582 non-coding upstream 110214 3842694 ~ 3844794 (+)
G70997 NA non-coding upstream 188233 3766437 ~ 3766775 (+)
G70995 NA non-coding upstream 205401 3748840 ~ 3749607 (+)
G70993 NA non-coding upstream 207946 3746617 ~ 3747062 (+)
G71073 NA non-coding downstream 45895 4151858 ~ 4154229 (+)
G71075 NA non-coding downstream 83662 4189625 ~ 4192656 (+)
G71103 NA non-coding downstream 184496 4290459 ~ 4290835 (+)
G71109 NA non-coding downstream 187274 4293237 ~ 4293456 (+)
G71112 NA non-coding downstream 196588 4302551 ~ 4302810 (+)
LOC111193071 NA other upstream 380250 3409670 ~ 3574758 (+)
G70846 NA other upstream 576398 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 662533 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1595779 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1761449 2088920 ~ 2193559 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 251102 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 809850 4915813 ~ 4921820 (+)
G71247 NA other downstream 850335 4956298 ~ 4980011 (+)
G71249 NA other downstream 857739 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1393945 5499908 ~ 5505638 (+)

Expression


Co-expression Network