LOC103045063 (LOC108435620)


Basic Information

Item Value
gene id LOC103045063
gene name LOC108435620
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4132022 ~ 4215716 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671982.1
GCTcgtcctgctgctgctccttttAATGCAttgaatgaaaatatttttggtgTCGTATGAAAATATATGCTGACGTACCAGATCATGTGGGCTTTTTCGTCGCACAGCcacttgcttttttattttttcctccacTACGCTCGTCTTTAGGATCCGCCAGAAATCTTTAGGATTacaaattgtgctttatgggGCGCCGCTGCCGCTCCTGCTGCCGCCCGTTCCTGAAACAGCAGCGGGGTTTTTTGGAGGGGAACGAGGCTCGTTAGCGCTGTTATCGGGGCTTAATCGTAATCTCGAGCTTTCCTGGAGAGAGACGGAGTGGGTTTTTATGATCAGGGGAGTTGTGTGATGAGGTCTTATGAAGCCCTGCACTGGAGCTGATGTTCCCGGTCAACGGGAGTCTCCGGAGCGAAGGCTGGGAGACTCCGGAGCGGACTGAGGAACCGCAGAGTCCCGCTCTCGTGCCGGGAATCCACTCTGATCACCTCCattcctctctccctccctccctttgCAACCCCTCCCAACGACCCTACCAGGCTTACCCCTGAACCCTGTCACTGCGATTACCATGTCCAGCCGAAGAAAGTCCTTCACTCCCTGCATGGTCTGCGTCAGCGATGCACCAACGGATAGCCCTGTGGAAATGGATATCTTGTCCAGCGAAGCAGTAGAGGACAGGTCTTCTTCTCTGCAGCCTTCATTAGATCTGCATCAAGTGTCAGCTGAGCACGAGGAGCTGAGTCATGTGGAAGCGACAGAAGGAAAGATAGAAAGCGAGAAGTCTCTTTCCCCAGAGAAACAGCAAGCAAGGGACTACCAGTGTAAGTACTGCCCTTTCTCCACTCAGAATCTCAACGACTTCAAAGAGCATGTGTACTCTGCACACCCTAACGTCATTCTGAACCCACTGTACCTGTGTGCCGTCTGCAACTTCAGCACCAAGAAGTTTGATTCCCTCACGGTACACAATGAATCGGAGCATCCAGGCGAAAGCAATTTCAAGTTCAAGCGAATTAAACTCGACAACCAGACCATCCTAGAGCAAACCATAGAAAACAAGCAAGATTCAGGCTCTGCTGACACTAAGATGCAAGACGACGATGACGACGACGATGACTTTTTACCCTCCTGCCTTTCAATCACAGAAAATGTTGCAAagcctgaaatatttaacatcCAAAATGAGGTCGAGAGCAATTTAGACAATCTCATATTTAAGGATCAGATCACTGCTGTCAGCGTTAATGGCACAATCATCATCCCTGAGCCCATGATCCTGCAGGGGCTCTCCCATGTCATGCCTCTGCTACAGCGCCCACCCAACCTTAAATCCATTCCAACCATTGCCGTTCCTCTGAACGCGAGCAAGTACAATCCCTTGTTGGACAGCAACCCCACCCTCATCACGTCCTTCAACAAATTCCCCTATCCAACTCACGCCGAGCTCTCGTGGCTCACTGCTGCATCCAAGCACCCAGAGGAGCAAATCAAGGTGTGGTTCACCACGCAGCGACTGAAGCAGGGAATCACCTGGTCACcagaggaggtggaggaagCTCGAAAGAAAATGTTCAACGGCTGCATGCCGCCTGCTGACCAGACGTTCACCGTTTTGCCTACGCCCGTGAGCGAGCCAATCGCCACCAACCACTCTGTCGCACCAGCAGTCTCCTGCCATGTCTTTGGGCAGTCCACTGCGAATGGATCCCCTGCTACATGTGCAACTGTCACTGTGACTACAGTCAGTAGTATGCATAATCTGAAGCGCTCACTCGGAACTCCGTCGGTGGTCCAGGAAGTTAAGCGGCCCATGATTCCCACGGAGGAACCCAAAGAGAAGCTGCGCATGGCACCCCCACCAATCCCTCCCTTAGAAAGACTACCCATGGCTCCTCCTCCTGTACCCCCAGATAGTAGGAGATGCATGCCCCCACCTTTAATCACGCCTGACATGAAGAGACCCATTGTCACCCCTTACGCTATGCCCAAGGTAATGTCAAAGTTACCAATGGGATTCCCACATGTGCCGCCCAAAGACAAGATGCCCATGGCACCCCCTCCCCTGTTGCCCAGAGATCGATTATCTATGGTGCCCTTACTGTCCACAGATTTAAAGAGGTCTATGGTTCCCCAACAGCTGAGGAATCATGTGCCTGCCTCTTCGGTAATCTCAATTTCTAAAGACAAACTGTCACCTTTACCTACTGATGGAAGCTTACCCCTGTTGCCCTCCCTGGTGACTTCTCAACTGAAGAGACCAACAATCATCCACACTGCACGAGCACAACCTATTGCCCCTCCCTTGGTCCCTACTTTCTCTCTGGAGTGTAAACCACTTGAGCCAGCAGCGGAGCAAAGGCTGACTGGCTCGGAGAGTCGACCCTCAGAGAGTCAGAACAGCAATAGAGTCCCCTGTGGGGACGGCAAGAATTGGTTTACTGACCAGAGTGCACTGGCCCACAATGGTTCACAGCACTTAAACAGTGACTTTGCTCCAAAGGAGCGTCTGAAAACGGTCCCGACCCAGTTCCCTCTCCTGGAAAGAGTGAAAGGGAAAACTGCTGATCAGCTGAAGGTTTTAGAGGAGAGTTTTCAGAGGAACAGTTTCCCATCCTACAACGAGGTCGACCATATCGCAGTCACCACCAGACTTTCCAGAGAGGAGGTTGACAGCTGGTTCCTGGAGCGGCGAGCGCTCCGGGACAACCTAGAAAAAGCCCTGTTGAATTCCATGGGCACAAAGAGAACTGACATGTTTGCGGAGAGACGATCACGATCACATTATCCGCATGCTTTCCTGAATGGGATTCACAAACAGATCGGCCTGCCCATGAGCCCTCTCCCTCCCATCATAGCCCCCGCCTCGTCCTCTGGACCTCTGGACAGGAAGTCCCTAAACCTCCTCAAAGATGTCTTTGTACAAACACGGTGGCCTTCACCTGAGGAATACAGTCGTCTGGAGGCGCAGACGGGCTTGGCTCGCACCGACATTGTCCGGTGGTTCAAAGACAGCCGCCTGGCTCTTCGCAGCGGCGCAGCGGAGTGGAAGGAGCTGTTCTACAGGCTGAGCAGCAGCGAGCTGAATGGCCGGCTGATCTCAGAGCAGCCCTGCGGCCTCGCTCCGCCAGGCCAGGAACGGAAGATGCCTAGAGCAGAGTGCACCAAACTAAGCAGAGAAGAGATCAAAGTCTGGTTCAGCAACACCCTAGGCCAGCATGGGCCCGAAGTGGGGAGGAATGGAGGTCAGAACGGAGGCGGCGGAGAGGAGTGTGGGGGCTGGATGGAGGAAGCAATAGGGGTGAAGGCCAGGATGGCGTCACGAGAGCTGGTCTCAGACACGGATTAGGCCACAGGAGGGAGAAGGGGCAGGAGAAGAGGGTAGGAGCTGCTGCCGCTGTCATTTTGCACAGAAGtggaagaaaagaagaggaacAGAAGCTTACTTTGAAATGTTGTATTTTTGGAACCAATGATTTTCACTCTTGCCCTCTTCCATTGTGCCAGCCAGCACACGGCGCCAGTCAGAAGCAGAAGGGGCCTCATCGCTGGGTGTCGCGTCGGGAGCGTTACCGGAGAGGAAGCCGAAACG
>XM_022671983.1
aaaagagaaacagggagagagagagacatagagtaaaaaataaataaataaataaaaagcgaAGCCCCGCCCAGGCCAGGAAGTTCTGGGAGTTGTGTGATGAGGTCTTATGAAGCCCTGCACTGGAGCTGATGTTCCCGGTCAACGGGAGTCTCCGGAGCGAAGGCTGGGAGACTCCGGAGCGGACTGAGGAACCGCAGAGTCCCGCTCTCGTGCCGGGAATCCACTCTGATCACCTCCattcctctctccctccctccctttgCAACCCCTCCCAACGACCCTACCAGGCTTACCCCTGAACCCTGTCACTGCGATTACCATGTCCAGCCGAAGAAAGTCCTTCACTCCCTGCATGGTCTGCGTCAGCGATGCACCAACGGATAGCCCTGTGGAAATGGATATCTTGTCCAGCGAAGCAGTAGAGGACAGGTCTTCTTCTCTGCAGCCTTCATTAGATCTGCATCAAGTGTCAGCTGAGCACGAGGAGCTGAGTCATGTGGAAGCGACAGAAGGAAAGATAGAAAGCGAGAAGTCTCTTTCCCCAGAGAAACAGCAAGCAAGGGACTACCAGTGTAAGTACTGCCCTTTCTCCACTCAGAATCTCAACGACTTCAAAGAGCATGTGTACTCTGCACACCCTAACGTCATTCTGAACCCACTGTACCTGTGTGCCGTCTGCAACTTCAGCACCAAGAAGTTTGATTCCCTCACGGTACACAATGAATCGGAGCATCCAGGCGAAAGCAATTTCAAGTTCAAGCGAATTAAACTCGACAACCAGACCATCCTAGAGCAAACCATAGAAAACAAGCAAGATTCAGGCTCTGCTGACACTAAGATGCAAGACGACGATGACGACGACGATGACTTTTTACCCTCCTGCCTTTCAATCACAGAAAATGTTGCAAagcctgaaatatttaacatcCAAAATGAGGTCGAGAGCAATTTAGACAATCTCATATTTAAGGATCAGATCACTGCTGTCAGCGTTAATGGCACAATCATCATCCCTGAGCCCATGATCCTGCAGGGGCTCTCCCATGTCATGCCTCTGCTACAGCGCCCACCCAACCTTAAATCCATTCCAACCATTGCCGTTCCTCTGAACGCGAGCAAGTACAATCCCTTGTTGGACAGCAACCCCACCCTCATCACGTCCTTCAACAAATTCCCCTATCCAACTCACGCCGAGCTCTCGTGGCTCACTGCTGCATCCAAGCACCCAGAGGAGCAAATCAAGGTGTGGTTCACCACGCAGCGACTGAAGCAGGGAATCACCTGGTCACcagaggaggtggaggaagCTCGAAAGAAAATGTTCAACGGCTGCATGCCGCCTGCTGACCAGACGTTCACCGTTTTGCCTACGCCCGTGAGCGAGCCAATCGCCACCAACCACTCTGTCGCACCAGCAGTCTCCTGCCATGTCTTTGGGCAGTCCACTGCGAATGGATCCCCTGCTACATGTGCAACTGTCACTGTGACTACAGTCAGTAGTATGCATAATCTGAAGCGCTCACTCGGAACTCCGTCGGTGGTCCAGGAAGTTAAGCGGCCCATGATTCCCACGGAGGAACCCAAAGAGAAGCTGCGCATGGCACCCCCACCAATCCCTCCCTTAGAAAGACTACCCATGGCTCCTCCTCCTGTACCCCCAGATAGTAGGAGATGCATGCCCCCACCTTTAATCACGCCTGACATGAAGAGACCCATTGTCACCCCTTACGCTATGCCCAAGGTAATGTCAAAGTTACCAATGGGATTCCCACATGTGCCGCCCAAAGACAAGATGCCCATGGCACCCCCTCCCCTGTTGCCCAGAGATCGATTATCTATGGTGCCCTTACTGTCCACAGATTTAAAGAGGTCTATGGTTCCCCAACAGCTGAGGAATCATGTGCCTGCCTCTTCGGTAATCTCAATTTCTAAAGACAAACTGTCACCTTTACCTACTGATGGAAGCTTACCCCTGTTGCCCTCCCTGGTGACTTCTCAACTGAAGAGACCAACAATCATCCACACTGCACGAGCACAACCTATTGCCCCTCCCTTGGTCCCTACTTTCTCTCTGGAGTGTAAACCACTTGAGCCAGCAGCGGAGCAAAGGCTGACTGGCTCGGAGAGTCGACCCTCAGAGAGTCAGAACAGCAATAGAGTCCCCTGTGGGGACGGCAAGAATTGGTTTACTGACCAGAGTGCACTGGCCCACAATGGTTCACAGCACTTAAACAGTGACTTTGCTCCAAAGGAGCGTCTGAAAACGGTCCCGACCCAGTTCCCTCTCCTGGAAAGAGTGAAAGGGAAAACTGCTGATCAGCTGAAGGTTTTAGAGGAGAGTTTTCAGAGGAACAGTTTCCCATCCTACAACGAGGTCGACCATATCGCAGTCACCACCAGACTTTCCAGAGAGGAGGTTGACAGCTGGTTCCTGGAGCGGCGAGCGCTCCGGGACAACCTAGAAAAAGCCCTGTTGAATTCCATGGGCACAAAGAGAACTGACATGTTTGCGGAGAGACGATCACGATCACATTATCCGCATGCTTTCCTGAATGGGATTCACAAACAGATCGGCCTGCCCATGAGCCCTCTCCCTCCCATCATAGCCCCCGCCTCGTCCTCTGGACCTCTGGACAGGAAGTCCCTAAACCTCCTCAAAGATGTCTTTGTACAAACACGGTGGCCTTCACCTGAGGAATACAGTCGTCTGGAGGCGCAGACGGGCTTGGCTCGCACCGACATTGTCCGGTGGTTCAAAGACAGCCGCCTGGCTCTTCGCAGCGGCGCAGCGGAGTGGAAGGAGCTGTTCTACAGGCTGAGCAGCAGCGAGCTGAATGGCCGGCTGATCTCAGAGCAGCCCTGCGGCCTCGCTCCGCCAGGCCAGGAACGGAAGATGCCTAGAGCAGAGTGCACCAAACTAAGCAGAGAAGAGATCAAAGTCTGGTTCAGCAACACCCTAGGCCAGCATGGGCCCGAAGTGGGGAGGAATGGAGGTCAGAACGGAGGCGGCGGAGAGGAGTGTGGGGGCTGGATGGAGGAAGCAATAGGGGTGAAGGCCAGGATGGCGTCACGAGAGCTGGTCTCAGACACGGATTAGGCCACAGGAGGGAGAAGGGGCAGGAGAAGAGGGTAGGAGCTGCTGCCGCTGTCATTTTGCACAGAAGtggaagaaaagaagaggaacAGAAGCTTACTTTGAAATGTTGTATTTTTGGAACCAATGATTTTCACTCTTGCCCTCTTCCATTGTGCCAGCCAGCACACGGCGCCAGTCAGAAGCAGAAGGGGCCTCATCGCTGGGTGTCGCGTCGGGAGCGTTACCGGAGAGGAAGCCGAAACG

Function

NR:

description
PREDICTED: zinc fingers and homeoboxes protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671982.1 True 3595 mRNA 0.53 3 4132022 4215716
XM_022671983.1 False 3343 mRNA 0.53 3 4165054 4215716

Neighbor

gene id symbol gene type direction distance location
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding upstream 26059 3955008 ~ 4105963 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 196918 3923972 ~ 3935104 (+)
LOC103043978 NA coding upstream 692867 3420240 ~ 3439155 (+)
ndufb9 ndufb9 coding upstream 778427 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 1018388 3095884 ~ 3113634 (+)
dpy19l4 dpy19l4 coding downstream 90949 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 642132 4857848 ~ 4884488 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 713461 4929177 ~ 4935065 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 727490 4943206 ~ 4954889 (+)
LOC111193076 NA coding downstream 740563 4956279 ~ 4957026 (+)
G71052 NA non-coding upstream 41388 4090088 ~ 4090634 (+)
G71048 NA non-coding upstream 136432 3994907 ~ 3995590 (+)
LOC111193074 NA non-coding upstream 171819 3956444 ~ 3960203 (+)
G71019 LOC108442489,LOC108274607,LOC105909062 non-coding upstream 243127 3884338 ~ 3888895 (+)
G71005 LOC108413582 non-coding upstream 287228 3842694 ~ 3844794 (+)
G71103 NA non-coding downstream 74743 4290459 ~ 4290835 (+)
G71109 NA non-coding downstream 77521 4293237 ~ 4293456 (+)
G71112 NA non-coding downstream 86835 4302551 ~ 4302810 (+)
G71118 NA non-coding downstream 123749 4339465 ~ 4340328 (+)
G71117 NA non-coding downstream 124971 4340687 ~ 4343650 (+)
LOC111193071 NA other upstream 557264 3409670 ~ 3574758 (+)
G70846 NA other upstream 753412 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 839547 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1772793 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1938463 2088920 ~ 2193559 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 141349 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 700097 4915813 ~ 4921820 (+)
G71247 NA other downstream 740582 4956298 ~ 4980011 (+)
G71249 NA other downstream 747986 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1284192 5499908 ~ 5505638 (+)

Expression


Co-expression Network