LOC111193075


Basic Information

Item Value
gene id LOC111193075
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4961589 ~ 4975625 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671987.1
tgtaactctTATTTTGTAGAGTCTGCTGGAAACAGCTCAGACGATGATAAACCTTTGAGTGAAatgatgaaaagaaaaaaggaacccGAGAAGAATCAATCTTCAGAGGAAGCACATACAAAGAAGCTCTCCGATTCAGAGGATGATGAAACACTCTTGACAGtgatgaagaagaggaagaacaagaagaagtcAGACACAGAGGAGACAGCAGTGCTGGATAAAAAAGAGCTCTCTGATTCGGAGGATGATAAACCGCTCCTGACGCTgatggagaagaagaagaacaagaaaaatccaGACACAGAGGAGACAGCAGTGCTTGATTCCAGCAGGACAAGAAGTCCAAGAAAGCAAAAAACAGACGCAGAGACCGCCAAGCACAGACAGGCATCACCATCACCAGTGAAGACTCCCcaaaaaagagcaagaaaaggtaaacGGGAAACAAGGAAAACGGCATCAGCACCACCTAAAAAAAGAGGGTGTGCTAAAAAACAGGACACACAGAGACAAGCGCCCTCTTGTGACAGCTCTGATAATGAGCCTTTGGTTGAGCTGGTGAAGAAGAAGAGGCAGCCGGAGATGAAGCGGGCGGTGGTGCTGCTGAAGCGGATGTCTAACAGAGACATTATTAACATGATTACACAGGGACATGAATGCAGCCAAGTGCAGAAGAGCACAGTCAAAGTGGATGAGAAGAGTAAAGCAGAAAGTTCAGACGAGGAGCCGCTGAGTCACAAAGTGAAGAGACTGAAACAGCACAGTAAACCTGTGAGAGGCAGAGCAACCACAGGTAAGAATGAATAGGGTCAGATTATGTCT
>XM_022671988.1
GTGCGGGTCTGGGGTAGAGGCGGGGTTCCGGGTCTCGGCCGCGGTTCTGGTTCTGGGTTAAAGCCCGGGTTTAACCTGCAGCGGCGGCGGCGTATACGCGCAGGAGCATGTTTTGGGGGAGAAGGCTAAGTGACTAGCCGGCTGCTACATCTGCATCAGGCCGGACTGCAGACACTTCACCCCGGCCACAGAGCCGCCGGCCCCCCGCTGCCCTAACTCCGCTCCGGAGCTCCGGGTCAGGCTGTGGGGTCTTCTGTACATCTCCTGCTTTACTACAGCTGTGTTATTACCTGCAAGTCTGTGCATGATGGCCTGAGCTGGGCTGGAGGATGCTGTGGCTCAGCTGATCCATCTTTAATCATCTGTGTTTTTAAACCGAGAGGAGCTTCTGAGGAACCCCAGCCCAGGTGACCAGCTGTAGGTCCCAGAGCAGGAGCTGCTGCCATGACTGACACTCAGCCCAGAGATGAGTCTGCTGGAAACAGCTCAGACGATGATAAACCTTTGAGTGAAatgatgaaaagaaaaaaggaacccGAGAAGAATCAATCTTCAGAGGAAGCACATACAAAGAAGCTCTCCGATTCAGAGGATGATGAAACACTCTTGACAGtgatgaagaagaggaagaacaagaagaagtcAGACACAGAGGAGACAGCAGTGCTGGATAAAAAAGAGCTCTCTGATTCGGAGGATGATAAACCGCTCCTGACGCTgatggagaagaagaagaacaagaaaaatccaGACACAGAGGAGACAGCAGTGCTTGATTCCAGCAGGACAAGAAGTCCAAGAAAGCAAAAAACAGACGCAGAGACCGCCAAGCACAGACAGGCATCACCATCACCAGTGAAGACTCCCcaaaaaagagcaagaaaaggtaaacGGGAAACAAGGAAAACGGCATCAGCACCACCTAAAAAAAGAGGGTGTGCTAAAAAACAGGACACACAGAGACAAGCGCCCTCTTGTGACAGCTCTGATAATGAGCCTTTGGTTGAGCTGGTGAAGAAGAAGAGGCAGCCGGAGATGAAGCGGGCGGTGGTGCTGCTGAAGCGGATGTCTAACAGAGACATTATTAACATGATTACACAGGGACATGAATGCAGCCAAGTGCAGAAGAGCACAGTCAAAGTGGATGAGAAGAGTAAAGCAGAAAGTTCAGACGAGGAGCCGCTGAGTCACAAAGTGAAGAGACTGAAACAGCACAGTAAACCTGTGAGAGGCAGAGCAACCACAGGTAAGAATGAATAGGGTCAGATTATGTCT

Function

GO:

id name namespace
GO:0051179 localization biological_process
GO:0051234 establishment of localization biological_process
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671987.1 False 825 mRNA 0.46 7 4961589 4967939
XM_022671988.1 True 1275 mRNA 0.51 8 4961589 4975625

Neighbor

gene id symbol gene type direction distance location
LOC103026470 LOC108435611 coding downstream 498617 4447172 ~ 4462972 (-)
LOC103042532 LOC108442489 coding downstream 1051060 3862118 ~ 3910529 (-)
LOC103024174 LOC108442487 coding downstream 1452593 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 1554158 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 1615113 3336209 ~ 3346476 (-)
kdm1b kdm1b coding upstream 39247 5014872 ~ 5046137 (-)
nudcd2 nudcd2 coding upstream 154977 5130602 ~ 5137613 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding upstream 436091 5411716 ~ 5422882 (-)
gstp1 gstp1 coding upstream 524390 5500015 ~ 5511729 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding upstream 556246 5531871 ~ 5596025 (-)
G71316 NA non-coding downstream 6716 4943303 ~ 4954873 (-)
G71315 NA non-coding downstream 19809 4940908 ~ 4941780 (-)
G71308 NA non-coding downstream 22214 4936637 ~ 4939375 (-)
G71305 NA non-coding downstream 26544 4933457 ~ 4935045 (-)
G71309 NA non-coding downstream 39770 4919555 ~ 4921819 (-)
G71324 NA non-coding upstream 9382 4985007 ~ 4986652 (-)
G71325 NA non-coding upstream 15296 4990921 ~ 4993129 (-)
G71322 NA non-coding upstream 25451 5001076 ~ 5043758 (-)
G71327 NA non-coding upstream 43427 5019052 ~ 5020681 (-)
G71328 NA non-coding upstream 52943 5028568 ~ 5089461 (-)
trnaw-cca_42 NA other downstream 37518 4924000 ~ 4924071 (-)
G71235 NA other downstream 77101 4882170 ~ 4884488 (-)
G71175 NA other downstream 548578 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1112965 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1257838 3575561 ~ 3703751 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 496041 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 853996 5829621 ~ 5841707 (-)
G71771 NA other upstream 1801614 6777239 ~ 6824756 (-)
G71826 NA other upstream 2081485 7057110 ~ 7057643 (-)
G71862 NA other upstream 2334150 7309775 ~ 7312926 (-)

Expression


Co-expression Network