LOC103041177 (sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734)


Basic Information

Item Value
gene id LOC103041177
gene name sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5068901 ~ 5082606 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671993.1
ATATTCAATGAGCTGGGCAGCAGCTGGAGTCAGTGGCAGGGCTGTGATTGGGAGGACTGGGTGTGCtggactggtactgtagACACCATGGCTGCTGAGATCTCCACCTCCATAAACATCAAAGAGCCTCGCTGGGATCAGGGAACCTTCATAGGCCGAGCGAAGCATTTCTTCACCGTCACAGACCCCCGCAACATCCTCCTGACCAATGAACAGCTGGAGAAAGCACACAGGATCATTCAGGATTACAGAAAGGGGGTGGTGTCTCCAGGTCTGACGGAAGATGAACTCTGGAGGGCGAAGTATATTTTTGACTCTGCGTTCCACCCGGACACAGGAGAGAAGATGCTGGTGATCGGCCGCATGTCTGCTCAGGTCCCCATGAACATGACCATCACTGGCTGCATGATGACCTTCTACAGGACAACCCCAGCTGTTCTGTTCTGGCAGTGGATCAATCAGTCCTTCAATGCAATAGTCAATTACACAAACCGTAGTGGGGACGCTCCCATTACAGTAAATCAGCTCTGCACAGCGTACGTATCGGCCACGACAGGAGCTGTGGCCACAGCTTTAGGACTGAACGCTCTAGCAAAGCATGTCTCTCCACTTCTGGGCCGCTTTGTGCCATTTgctgctgtagctgctgctaactgtaTCAATATTCCTCTGATGAGGCAAAGGGAGCTGAAGCACGGTATTCCAGTAACAGATGAGAATGATAATCGGTTAGGAGAGTCGACGAACGCAGCACAACAGGCTATCTCACAAGTGGTCATCTCCAGAATCCTCATGGCCTCTCCTGGAATGGCTATTCCTCCGTTTTTAATGAACTCATTGGAAAAGAAAGCGTTCCTGAAGAGGTTCCCATGGATGAGTGCACCCATTCAAGTCGGCTTGGTGGGATTTTGTTTGGTGTTTGCCACTCCACTGTGCTGTGCACTGTTCCCACAGAAGAGCTCCATGGCCCTGAGCCGCCTGGAGCCCGAGCTTCAGGAGAAGATCCGTGCCAGTCATCCAGGAGTGGAGAGAGTCTACTTCAATAAAGGACTATGAGAGGAAAAGCCCCATCCCAACACTGCCATGGCCATCCCACTCTCCGCCATTATAAAGCCACCTTCAGTGTGCCAAAGTTAAGTTTCTCCACCTCATCTCAAGGACATCCCAACTCAGTCGTTTTTTTGTAAGACGTTTTACCTAGTGACTTTTTTTATCATGAAAGATTTGTTGGTTTTCTTTGATGTCGTTCGTGTTAGGAGAAGACTTGTCATGAAGGTGCTCTTTcagtattttttgtcatttgttgAAAACAGTGCAGTCCAGAAGCAGTTGGACAGTGATGTGATTGTGGTTGGTGTTGttttattaagaataaaataataacaaaggCAATGATTTAA

Function

symbol description
sfxn1 Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in nervous system; pronephric duct; and yolk syncytial layer. Orthologous to human SFXN1 (sideroflexin 1).

NR:

description
PREDICTED: sideroflexin-1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23500 SFXN1_3; sideroflexin-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671993.1 True 1400 mRNA 0.49 12 5068901 5082606

Neighbor

gene id symbol gene type direction distance location
cfap69 cfap69 coding upstream 1394 5048506 ~ 5067507 (+)
LOC111193046 NA coding upstream 88879 4979467 ~ 4980022 (+)
LOC111193076 NA coding upstream 111875 4956279 ~ 4957026 (+)
dnajc8 dnajc8,LOC102775708 coding upstream 114012 4943206 ~ 4954889 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding upstream 133836 4929177 ~ 4935065 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding downstream 9272 5091878 ~ 5117839 (+)
ccng1 ccng1,LOC107745080 coding downstream 41348 5123954 ~ 5130557 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding downstream 61159 5143765 ~ 5173256 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding downstream 99897 5182503 ~ 5313658 (+)
atp10b NA coding downstream 257044 5339650 ~ 5408015 (+)
G71260 NA non-coding upstream 25143 5001091 ~ 5043758 (+)
G71248 NA non-coding upstream 62676 4958156 ~ 5006225 (+)
G71256 NA non-coding upstream 75722 4990852 ~ 4993179 (+)
G71246 NA non-coding upstream 99982 4963971 ~ 4968919 (+)
G71244 NA non-coding upstream 126784 4941409 ~ 4942117 (+)
G71287 nudcd2 non-coding downstream 51129 5133735 ~ 5137567 (+)
G71294 NA non-coding downstream 122610 5205216 ~ 5207077 (+)
G71304 NA non-coding downstream 213072 5295678 ~ 5298321 (+)
G71397 NA non-coding downstream 241063 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 326425 5409031 ~ 5410313 (+)
G71247 NA other upstream 88890 4956298 ~ 4980011 (+)
G71249 NA other upstream 100994 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 147081 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 626970 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1494143 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 417302 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 590112 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 788484 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1443035 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1798981 6881587 ~ 6885541 (+)

Expression


Co-expression Network