gabrb2 (gabrb2,LOC107554707,LOC107684828)


Basic Information

Item Value
gene id gabrb2
gene name gabrb2,LOC107554707,LOC107684828
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5182503 ~ 5313658 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671995.1
ATGGAGCGGCAGAGGAAAACACAGTGCATCTTCCTGCTGTGTCCCCTCATCATGACGGCCGTGTGCGCGCAAAGcAACAGAGACCCCAGCAACATGCCCGTGGTGAAAGACACGGTGGATAGACTCATGAAGGGATACGACATTCGGCTGAGGCCAGATTTCGGAGGGGCTCCGGTGGCGGTGGGGATGAACATAGACATTGCCAGCATTGACATGGTGTCCGAGGTGAACATGGACTACACCCTGACCATGTACTTCCAGCAAGCCTGGAGGGACAAGCGCCTCTCCTACTCAGAGATCCCCCTGAACCTGACGCTGGACAACCGCGTGGCCGACCAGCTGTGGGTCCCCGACACGTACTTCCTCAACGACAAGAAGTCCTTCGTCCACGGCGTCACCGTCAAGAACCGCATGATCCGCCTGCACCCCGACGGAACCGTGCTGTACGGACTGAGGATCACCACCACTGCGGCCTGTATGATGGACCTGAGACGCTACCCACTGGACGAGCAGAACTGCACGTTAGAGATCGAGAGCTACGGCTACACCACCGATGACATTGAGTTCTACTGGCGAGGAGGAGACGGCGCTGTCTCTGGAGTGGAACGTATCGAGCTGCCTCAGTTCTCCATTGTGGACTACAAACTCATCTCCAAGAACGTGGTCTTCTCTACAGgttcaTACCCACGGCTGTCCCTGAGCTTTAAACTGAAGAGGAACATTGGCTACTTCATCCTGCAGACGTACATGCCTTCCATCCTAATCACCATCCTCTCCTGGGTCTCCTTCTGGATCAACTACGATGCCTCCGCTGCCCGTGTGGCTCTAGGTATCACCACTGTGCTGACTATGACCACCATTAACACTCACTTGCGAGAGACCCTCCCCAAGATCCCCTATGTGAAGGCCATAGACATGTACCTGATGGGCtgctttgtctttgtcttcCTGGCCCTGTTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGCCCTCAGAGACAGAAGAAGGCGGCGGAGAAGGCTGCCACCGCCAACAACGAGAAACTGAGGCCAGATCCCAACAAGTGGAtggtgggaaatgtagttcagAGAGACGATGCTCTCTATGCCAGAATGAAACAGAGGGAAATTGACGTGTATGACTCGATGTGGGATCCAATCTTTGCGGAGGATGCTGCATTAGGACTAGGCGAGCAGAGACTTAAGATGAACCCAGATGACATCCGGCTGACCACGGTGGAGATGAAGAACGAGATGGGCCCGGGGGATCTGTCCCGGGGTCTGGGGGACccccgcagcagcagcatgctGGCCTACGACAGCTCCACGCTGCAGTACAGGCGGGCCGCCCTGGCGCGCCACAACTACGGCCACAGCGGCCTGGAGCGCCACTCCACGCAGAAGAAGAGCCGCCTGAGGAGACGGGCCTCGCAGCTCAAGGTCAACATCCCCGACCTGTCCGACGTCAACTCCATCGACAAGTGGTCCAGGATGATCTTCCCCACCGTCTTCTCCTTCTTCAACGTGGTCTACTGGCTCTACTACGTCCATTAAGGAGGGGCGGAGAGGACGGCGAGCGGACCAGAACAcgtttaaaaaagagaaaacctaACGAGAATTAACGacaacgagaaaaaaaaaacgagaaaaaaaaaacaaacactgcgCCCCTTTTTCGCTGATTTCtttctgcttttattggagGTAAAGAGACTTGGAACACGCggggacaaaaaaaatgataataaatcaGGATTACAactactttctttttcttccgaGAGCACCACGATAACGACTGACAATTTAAacacaccaacaacaacaacaacaaaaaaaaagaagaacaaaaaaactggACTGAAAAAACTGGGGCCTGTTGCGGAGTTTCAGTATATCACGTATATTTGTCATTCGTAGCTTACTCGCTTACTCTGTGGATCAAATATTTATGCTTGTGTTTGCATATCTTTTAAGGATTCGTTTTTTTGGTTAGTCTATCTATTTACTTCGTAGACAATGCCTACTGCATCCAGGAAAGCTTTATAGATGATTTTTTGAAGGAGTCATCCTTGAAAGCCTATTTTCCTATAGTTAAAACTGCTGTCTTTCAGACATCTTTTAAAAAAACGCATGCTTCGGTTCGTTTTCGTTTTCCACATCTCCTGCGGCGAGATGGAGCACaatgcattttagttttttgactGGTTATAAAAGATCCTTCTGTTCTTTCGAAAAATGAGTTCGCTTGGGCGCAACTGCAAAGCACTGTCTTTCTGGGAGCCAAAcagggtaaaaaaaacacacgccAGGTAACTTGTTGTCATCATGACGTCGCCGAGCGGATGCGGACGGGCCTGTTGACCCGAAATGGCTTAAACTTGCCCCTCCTATGGTGGGGACTCTGAACATTTGAGGGAAATGGAACGAGATTGGGGCGAACTATGACTGAGGACATTTGTGGCCCCGTGGAAGGACAAGATAGAGATGCGTCATTATCCTGGCAATCTGTCCAAACGTAGGCCATCAAAAactacactccacacaccaatCCTCATCTCTACACTGTATAAACTCATGGGTGGCGATCAAAAGGCGGAGAGCTAAAGGCTGTTTGTTTAAGCATCTCTGAAGTGTTCTCAACAAATGACAATGATCAATGATGATGGACAAGGTGAGTTACCCcttgatatataaaaaaaaaaaacgatatttaaaaagaaaacgaCATACCTGTAATTCATTATCACTATCGATAGATTTAagtttaagagaaaaaaaagaagagctcATAGATGATATTAAAAAccatgttattaaaaaaaaaagacacaatttTATAATTCAATAGTATACTATCAGATGTTAATgttataaatcattatttaaacatgtattttttggtgTACTAGGTTTCTTACTGTGGAGAAAGATCTGTAATTGGTGCAGAGCAGGCTAGTGGCCGGGATCTTTCTCACAGCCTGTACGTGCACCGCTTGTTGAGAGTACAGAAtgctgaaaaatgaataaagtcACCATATCAAAAACACGACAGTATTTGGATAGAACAATCAAGGCATCTGGAAGGCAATTTTGTACAAAATCCTGTAAATTGTAATGATATTTCATAATgacctgtaaatatatattgtgtaatgactgtcaacaaataacaaaaatgtatctaaattaaattattaaagctGGGTCAAGCTTACATCA
>XM_022671996.1
GCGCATGCGCGCCTCATTGCCTCCACTGCGCTGGACTAAGTTGGACGTGCGCTGCCTTCGCCAGGTCCGCGAGCCCCGTTCAGCAGAACTGTTGCGATGGAGCGGCAGAGGAAAACACAGTGCATCTTCCTGCTGTGTCCCCTCATCATGACGGCCGTGTGCGCGCAAAGcAACAGAGACCCCAGCAACATGCCCGTGGTGAAAGACACGGTGGATAGACTCATGAAGGGATACGACATTCGGCTGAGGCCAGATTTCGGAGGGGCTCCGGTGGCGGTGGGGATGAACATAGACATTGCCAGCATTGACATGGTGTCCGAGGTGAACATGGACTACACCCTGACCATGTACTTCCAGCAAGCCTGGAGGGACAAGCGCCTCTCCTACTCAGAGATCCCCCTGAACCTGACGCTGGACAACCGCGTGGCCGACCAGCTGTGGGTCCCCGACACGTACTTCCTCAACGACAAGAAGTCCTTCGTCCACGGCGTCACCGTCAAGAACCGCATGATCCGCCTGCACCCCGACGGAACCGTGCTGTACGGACTGAGGATCACCACCACTGCGGCCTGTATGATGGACCTGAGACGCTACCCACTGGACGAGCAGAACTGCACGTTAGAGATCGAGAGCTACGGCTACACCACCGATGACATTGAGTTCTACTGGCGAGGAGGAGACGGCGCTGTCTCTGGAGTGGAACGTATCGAGCTGCCTCAGTTCTCCATTGTGGACTACAAACTCATCTCCAAGAACGTGGTCTTCTCTACAGgttcaTACCCACGGCTGTCCCTGAGCTTTAAACTGAAGAGGAACATTGGCTACTTCATCCTGCAGACGTACATGCCTTCCATCCTAATCACCATCCTCTCCTGGGTCTCCTTCTGGATCAACTACGATGCCTCCGCTGCCCGTGTGGCTCTAGGTATCACCACTGTGCTGACTATGACCACCATTAACACTCACTTGCGAGAGACCCTCCCCAAGATCCCCTATGTGAAGGCCATAGACATGTACCTGATGGGCtgctttgtctttgtcttcCTGGCCCTGTTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGCCCTCAGAGACAGAAGAAGGCGGCGGAGAAGGCTGCCACCGCCAACAACGAGAAACTGAGGCCAGATCCCAACAAGATGAACCCAGATGACATCCGGCTGACCACGGTGGAGATGAAGAACGAGATGGGCCCGGGGGATCTGTCCCGGGGTCTGGGGGACccccgcagcagcagcatgctGGCCTACGACAGCTCCACGCTGCAGTACAGGCGGGCCGCCCTGGCGCGCCACAACTACGGCCACAGCGGCCTGGAGCGCCACTCCACGCAGAAGAAGAGCCGCCTGAGGAGACGGGCCTCGCAGCTCAAGGTCAACATCCCCGACCTGTCCGACGTCAACTCCATCGACAAGTGGTCCAGGATGATCTTCCCCACCGTCTTCTCCTTCTTCAACGTGGTCTACTGGCTCTACTACGTCCATTAA

Function

symbol description
gabrb2 Contributes to GABA-gated chloride ion channel activity. Involved in gamma-aminobutyric acid signaling pathway and inhibitory synapse assembly. Located in plasma membrane. Implicated in autistic disorder and developmental and epileptic encephalopathy 92.

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit beta-2 isoform X1

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671995.1 True 3231 mRNA 0.47 10 5182599 5313658
XM_022671996.1 False 1518 mRNA 0.58 9 5182503 5311990

Neighbor

gene id symbol gene type direction distance location
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding upstream 9247 5143765 ~ 5173256 (+)
ccng1 ccng1,LOC107745080 coding upstream 51946 5123954 ~ 5130557 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding upstream 64664 5091878 ~ 5117839 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding upstream 99897 5068901 ~ 5082606 (+)
cfap69 cfap69 coding upstream 114996 5048506 ~ 5067507 (+)
atp10b NA coding downstream 25992 5339650 ~ 5408015 (+)
atp7a atp7a,LOC101485317 coding downstream 117031 5430689 ~ 5476431 (+)
LOC103038898 NA coding downstream 166730 5480388 ~ 5485164 (+)
LOC103044251 NA coding downstream 177764 5491422 ~ 5494564 (+)
LOC103037091 NA coding downstream 383261 5696919 ~ 5731315 (+)
G71287 nudcd2 non-coding upstream 44936 5133735 ~ 5137567 (+)
G71260 NA non-coding upstream 138745 5001091 ~ 5043758 (+)
G71248 NA non-coding upstream 176278 4958156 ~ 5006225 (+)
G71397 NA non-coding downstream 10011 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 95373 5409031 ~ 5410313 (+)
G71473 NA non-coding downstream 214338 5527996 ~ 5532969 (+)
G71474 NA non-coding downstream 214797 5528455 ~ 5532295 (+)
G71489 NA non-coding downstream 289462 5603120 ~ 5603321 (+)
G71247 NA other upstream 202492 4956298 ~ 4980011 (+)
G71249 NA other upstream 214596 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 260683 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 740572 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1607745 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 186250 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 359060 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 557432 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1211983 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1567929 6881587 ~ 6885541 (+)

Expression


Co-expression Network