LOC103044536 (LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223)


Basic Information

Item Value
gene id LOC103044536
gene name LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5411716 ~ 5422882 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671998.1
agagagagtcagtcgGTCAGTCCATGTTTTCCCGCGCTCACGTGCCCGCGCGTGCACGCGTGTTGTTCAGTAGTGTGGCTCCGATGCCAGAAGCTCAGCTTAGCAACACtacagctgctgctgccgctgctgtcGGTGGCGTTGCTCTTATTATTCAGCGATTTTTTGGATCAAAATTACACAGTTTTGTCATGAGTCGAGTCCCAGCGGTGGAATAAACGCTCCCTTTGTTTATTGATTGGAGAAGATTATGAGATTTCATCGGAAAGGTTCCtaaaacaaGATGAAACGAGGCAGAGTAAACATTGCGGCAAAGTGCCAGAGCTTTAGCCCTACTCAAAGCAGAGCCAAGAAACAGAAGACTGGCCAGGGGGTGTTCACCTTACAGAGCTATGCCCAGGACTGGGGCAACCTGCCCCATCACATTGTTCTCCACATATTCCAGTACCTGTCGCTGGTGGACCGGGCGCGGGCCTCGTCCGTGTGCCGCCGCTGGAACGAGGTGTTTCACATCCCTGAACTTTGGAGGTGTTTTGAGTTTGAACTGAATCAGCCAGCCACATCCTACCTGAGGTCCACACACCCTGACCTCATTCAGCAGATCATCAAGAGACACGCTCAGCACCTGCAGTACGTCAGCTTCAAGGTTGACAGCTGCACGGAGTCCGCAGAGGCAGCGTGTAACATCCTGTCCCAGCTGGTGAACTGCACCATTAAAACTCTGGGCCTGATCTCCACGGCACGGCCCAGCTTTATGGATGTCTCTCAGTCACACTTCGTGTCTGCGCTGACGGTGGTGTTTGTGAACTCCAAGTCCCTGTCCTCCATAAAAATCGATGATACGCCTGTCGACGACCCCTCCCTGAAGGTTCTGGTGGCTAACAACAGTGACACCCTGAAGCTTTTAAAGATGAGCAGCTGTCCACACGTCTCTCCTGCAGGGATCCTGTGTGTGGCAGACCAGTGCCACGGCCTACGGGAGCTGGCCCTCAACTACCACCTGCTGAGTGACGAGCTGCTGCTGGCGCTCTCCTCCGAGAAGCACGTGCACCTGGAGCATCTGCGCATCGACGTGGTGAGCGAGAACCCGGGACAGACGCAGTTCCACAGCATCAAGAAGAGCAGCTGGGACGCCCTCATCCGCCACTCGCCGCAGGTCAACATCGTCATGTACTTCTTCCTGTACGAGGAGGAGTTTGAGCCGTTCTTCTGCGAGGAGACGCCCGTCACGCACCTGTACTTTGGCAGGGCTGTCAGTAAGGACATGCTCGGGCGCATCGGGCTGAACTGCCCGCGCCTGGTGGAGCTGGTGGTGTGCGCCAACGGGCTGGAGCCTCTGGACGAGGAGCTGATCCGCATCGCTGAGCGCTGCAAGAGCCTGACTGCCATCGGCCTGGGAGAGTGCGAGGTCACCTGCAGCGGGTTTATGGAGTTTGTAAAGATGTGTGGTGGACGCCTCAGCCAGCTGTCCATCATGGAAGAGGTGCTGATACCGGACAACAGCTACAGCATGGAGCAGATACACAGCGAGGTGTCCAAACATCTCGGACGCATCTGGTTCCCTGACATGATGCCCACCTGGTAGACACATACATGCATACgtatacatacagtactgtgcaaatgtttcaTCCAAATCAAGGGTATTTCTAGACCTCACCCTGCCCTTTAGCGCCCTCTGCTGCCCattacattactacatttttgtatgtttgttaaactaatatattaatttaactgtttttaataataaaaataaaagaatcaggCAGCTAAATGCACAAGCTGCTGAATCTGCTTTGGTTTGTGTGAATCAGGTTTCTAAATGAACCAAACTGACAGAAGAAGTAACATTTCACCAGTTTCCTGGTAAACTGTATGGTCACCATCagtctc

Function

NR:

description
PREDICTED: F-box/LRR-repeat protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671998.1 True 1896 mRNA 0.53 5 5411716 5422882

Neighbor

gene id symbol gene type direction distance location
nudcd2 nudcd2 coding downstream 274103 5130602 ~ 5137613 (-)
kdm1b kdm1b coding downstream 365579 5014872 ~ 5046137 (-)
LOC103041488 NA coding downstream 397849 4958105 ~ 5013867 (-)
LOC111193075 NA coding downstream 436091 4961589 ~ 4975625 (-)
LOC103026470 LOC108435611 coding downstream 948744 4447172 ~ 4462972 (-)
gstp1 gstp1 coding upstream 77133 5500015 ~ 5511729 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding upstream 108989 5531871 ~ 5596025 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding upstream 347905 5770787 ~ 5800724 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding upstream 421759 5844641 ~ 5859370 (-)
LOC103032061 LOC108436848,LOC107680293 coding upstream 589337 6012219 ~ 6036754 (-)
G71396 NA non-coding downstream 88074 5323344 ~ 5323642 (-)
G71361 NA non-coding downstream 180902 5156618 ~ 5230814 (-)
G71328 NA non-coding downstream 322255 5028568 ~ 5089461 (-)
G71338 sfxn1,LOC108275306,LOC108240619,LOC106517750 non-coding downstream 336111 5068899 ~ 5075605 (-)
G71322 NA non-coding downstream 367958 5001076 ~ 5043758 (-)
G71464 gdf9 non-coding upstream 67481 5490363 ~ 5491941 (-)
G71472 NA non-coding upstream 104777 5527659 ~ 5527874 (-)
G71488 NA non-coding upstream 176832 5599714 ~ 5599952 (-)
G71496 NA non-coding upstream 220008 5642890 ~ 5678873 (-)
G71501 NA non-coding upstream 256923 5679805 ~ 5680110 (-)
trnaw-cca_42 NA other downstream 487645 4924000 ~ 4924071 (-)
G71235 NA other downstream 527228 4882170 ~ 4884488 (-)
G71175 NA other downstream 998705 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1563092 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1707965 3575561 ~ 3703751 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 48784 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 406739 5829621 ~ 5841707 (-)
G71771 NA other upstream 1354357 6777239 ~ 6824756 (-)
G71826 NA other upstream 1634228 7057110 ~ 7057643 (-)
G71862 NA other upstream 1886893 7309775 ~ 7312926 (-)

Expression


Co-expression Network