atp7a (atp7a,LOC101485317)


Basic Information

Item Value
gene id atp7a
gene name atp7a,LOC101485317
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5430689 ~ 5476431 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671999.1
gcaGCTCTGCGCAGTTTGTGGCAGCTCTGCGCAGTTGGTGGCGGGTGTTGAGTCTCCTGAGCGcggtgtgtgtggatgtgggcAGGTCTGATTAATCTGTTGTGAGAGGAGACTCGGGCAGTGTGACAGCTCCACACGTACCGCCGGGCTCTGCTCTCTCACTGCGGGGGAATGGTTGACCCGGTGTCGGCGTGGTTTCAGCCTTCAGCCGGCGGCGAGGAGGAGCGCGGAGCTCCGCGGGTACTGAGCGCTGTTAGCCGTGGAGGCTAGAGTTAGCTAGCCTAGCtctgttagctaactaactctcTCTATCAGAGGATTTACATCACATACCAGCCCGAAGAAATCTCTACAGGGCTCTCACACTAAGAGTAAATGATGGCTCAGAGCGGTGGCCTGTGTTCTGTGACCCTCACTGTTGAGGGGATGACCTGTGGCTCCTGTGTCCAGACCATAGAGCAGCAGATTGGTGGGCTTTCAGGAGTTATTCATATAGAgGTTTCCTTGGAACAGAAGAACGCCACTGTGATATTTGACCCAGCCAGCCACAGCCCAGAGTCTCTAGCAGATGCCATTGAGGACATGGGTTTTGAGTCAGACGTGACCAACGCTTCCCCGACCACCCCTGTACAGACAGAAACCCGGGTGTACCCCACGACTGGCTGTAGCGCAGAGGCTCAGCGGCAAGCTCACACCCAGCTGGCCCAGCTGAAGGGTGTGGTGGAAACCCAAGAAAGTATTGAGGGCAAGGGCCTGGCTGTCACCTTTATTCCGACAGTGGTGAGTCCAGAGCGGGTCCGTGAGGCGGTGAGTTGCCTCGTTCCGCAGCCTGCGAGTACCTCAGAGCGGTCGACAGGCCGTGGCTCCGGCAATGTGGAGGTAGTGAAGATGCGGATTGATGGAATGGTCTGCCTGTCCTGCACCACAACCATTGAGGGCAAGATTGGGAAGTTAAAAGGGGTGGAGAAGATTAAAGttgGTCTCGAGTCTCAGGAAGCCACGGTGCTCTACTTACCTTACCTCATCACAGTGGAGGACATAGTGAACCAGATTGGGGTGGCAGGATTCAAGGCCTCTGTGAAATCCAAACCCCGCCAGCTGCAGCTCTCCTCAGTGGAGCGGTTGCTGAATGCCTCACAACTGAGTAGTCCCACCTCACCAGAGGAGAAGACCTCCACACAGGCCCTCGAgtccactaccaccaccactatcACTACTCTGATTAATGTGTCAGGAATGCACTGCAACTCCTGTGTGGTGAACATCCAGGACAATATAGGCAAAGTGCGGGGGGTCAGCTCTGTGCAGGTCTCTCTGGAAAAACGACAGGCTGTAATCCAGCACAACCCAAGTATTGTGACTGTAGCGGCACTGCAGAGGGCTATTGAGGCTCTTCCTCCTGGGAAATTTAAGACCCAGTTAGACGGCCAAGACGCCACCTTGCCCTCGTCTCTCTCAGAACTGTCCTTGCTCCAGCTTTCTGAACAGCCGCTGGCCTCCACGGTGCAGATCCACATAGAGGGCATGACCTGTAACTCCTGTGTTCAGTCTATTGAAGGAACCATTTCTCAAAGGAAAGGTGTGAGATCTGCACAGGTGTCCCTGGCCAACCATCAGGGTACGTTTGAGTTTGACCCACTTCTGACCGCACCGGAAGAACTGCGCGCCGCCATTGAGGAAATGGGGTTTGATGCTTTTCTGCCCGAGACTAATTCACTAATTCCAGTGAAAAGCCCTCCGTCTATAAGGAGCTCACCCTCCTCCCCTGCGCTGTCCACCAtaaaggagaaggagaaggagctGGAGAGTGACACAGAGGCAGGGTTGAACACACATTCCAAATGTTTTATCCAGATCGGGGGCATGACCTGCGCCTCCTGTGTGGCCAACATCGAGAGGAATCTGAAAAACGAGCACGGAATACACTCAGTGCTGGTGGCACTAATGGCCAGTAAAGCAGAGGTGCGTTACAACCCTGCAGTCATGGACCCTCTCAAGATTGCGGAGTGCATCAGAGAGCTGGGCTTCACCGCCTCCGTCATGGAGAACTACGATGGCTCCGATGGCGCTCTGGAGCTTGTGATCAGAGGTATGACGTGTGCCTCCTGCGTCCACAAAATCGAGTCTAGCCTGATGAAACAGAAGGGAATCGTATATGCCTCGGTTGCCCTGGCAACAAATAAAGCCCACGTTAAATATGACCCAGAGGTGACCGGCCCAAGGGACATAATCAGACTGATTGAGAATTTGGGGTTTGAAGCTTTGCTGGTGAAGAAGGATCGTTCAGGAAGTCATCTGGATCACAGTATAGAGATACAGCAGTGGAAGAAATCCTTCCTCATCAGCCTGGTGTTCTGCGTTCCTGTTATGGGAATGATGATCTACATGATGGTGGTCGACCACATGATCGTAATGTCCCACCATCACAACGCCACACGAGAAGACAGACAGATGTACCACTCCCACATGTTCCTGGAGAGGCAGCTCCTACCCGGCCTGTCCATCATGAACCTGCTCTCCTTCCTCTTCTGTGTGCCTGTGCAGTTCATTGGAGGCCGTCACTTTTACGCCCAAGCATATAAAGCTCTAAAGCACTGGTCAGCCAATATGGACGTGCTGATAGTCCTGGCCACGTCCATCGCTTTTACTTACTCCCTGGTCATTCTGATGGTTGCCATGATTGAGAAAGCGAAGGTGAACCCCATCACCTTCTTTGATACGCCACCGATGCTCTTCGTCTTCATCTCACTGGGCAGATGGCTGGAGCAGATAGCCAAGAGTAAAACGTCTGAGGCTCTGTCCAAGCTGATGTCCTTACAGGCGACTGAGGCTACTGTTGTGACTCTGAATGGAGATACAATGGCCGTGTTAAGtgaggAGCAGGTGGATGTGGAGCTGGTACAGAGGGGTGATATAGTCAAAGTGGTTCCAGGAGGAAAGTTCCCAGTAGATGGGAGAGTCATTGAAGGACATTCAATGGCAGATGAGTCGCTCATCACAGGTGAAGCCATGCCAGTAACAAAGAAACCCGGGAGTACAGTGATCGCTGGTTCCATCAACCAGAACGGATCTCTGCTCATCCGAGCCACGCATGTAGGCACAGATACCACTCTCTCACAGATCGtcaaactggtggaggaggcgCAGACCTCAAAgGCTCCTATTCAGCAGTTTGCAGATAGGATCAGTGGCTACTTCGTCCCCTTTATAGTAGCGGTCTCCGTCCTCACCCTCCTCGCCTGGATAGCGATTGGATTTGTAAACTTCCGTCTGGTGGAGATGTACTTCCCTGGCTATGATAAGAGTGTGTCTCAGGCAGAGGCCATCATTCGCTTCGCCTTCCAGGCCTCCATTACAGTGCTGTGCATCGCCTGCCCCTGCTCTCTGGGTCTGGCAACTCCCACAGCAGTGATGGTGGGTACAGGAGTCGGAGCTCAGAACGGAATTCTTATCAAAGGAGGCGAGCCTCTAGAAATGGCCCATAGGattcAGTCTGTGGTTTTTGATAAAACTGGCACCATCACATATGGAGCTCCTAAGGTGGTGCAGGTGAAGATTTTGGTGGAGGGAAACCGAATGCCTCGCTCCAAACTTCTGGCCATTGTTGGCACGGCGGAGAACAACAGCGAGCATCCACTCGGGGCAGCAATCACCCGCTTCTGTAAACAGGAGCTGGGCACAGAGATGCTGGGCACCTGCACAGATTTccaggctgtgccaggctgtggCATCAGGTGTCATGTGAGCAACACTGAGAACCTGGTAAAGAGGGAGGACAGTGATGGGGAGGAGAACCAGCGCAATGCCATCCTGGTGCAGATCAGTGACCCCAGAGCCAGTTCCAACGCACATCCCCTCATTATGGACCCGGAGCCACTCACTCTGGTCCAGTCAGCCTCGTACACAGTGCTGATTGGGAACAGGGAGTGGATGAGACGCAATGCTCTGCACATTCGGCCTGATGTGGACGAGGCCATGACGGAACACGAGAGGAGGGGCCGCACTGCTGTACTTGTTGCTGTGGACGGTGAGCTGTGTGCCATGGTTGCTATAGCGGATACAGTAAAGCCGGAGGCTGAGCTAGCTGTTCACACTCTTACCTCCATGGGTCTGGAAGTGGTGCTGATGACCGGCGACAACAGCAAAACTGCACGAGCCATCGCTGCACAGGTTGGCATCAGGAAGGTGTTTGCGGAAGTGCTGCCCTCTCACAAGGTGGCTAAAGTAGAGCAGCTGCAGCAGGCTGGGAAGCGGGTGGCCATGGTGGGCGATGGAGTGAACGACTCTCCTGCACTAGCAATGGCAGACGTGGGCATCGCCATCGGCACAGGCACTGATGTGGCTATTGAAGCAGCTGACGTTGTGCTAATCAGGAATGATCTTCTTGATGTTGTTGCGAGCATTGATCTCTCAAAAAAGACAGTCAAGCGGATCCGTATAAACTTTGTATTTGCACTAATCTACAATCTTGTGGGAATTCCTATTGCAGCGGGTGTTTTTATGCCAATAGGTCTGGTGCTGCAGCCCTGGATGGGCTCTGCTGCCATGGCAGCCTCTTCAGTCTCTGTGGTCCTCTCCTCCCTGCTGCTCAAATGTTACAACAAACCCAGTGCGGAGAAGCTGGAGCTGCAGCTAGCCGGGCTTCGCAGGCAGGGCAGCCTATCAGACGTCAGCGTTCACATCGGCATGGGGGAGCTGCGGCGCCAGTCGCCCAAACTGAGCCTGCTGGACAGACTGGTCAACTACAGCCGAGCCTCCATCAACTCCCTGCGCTCGGACAAGCACTCGCTCAACAGCATGGCCCTGAGCGAGCCCGATAAACACTCGCTGCTCATCGCCGGAGCCCACTGTGAGGAGGAGATGGTctgagggggcggggctccgaGCAGCAGTGCTCCAATGATTCATCAACAGGAGCTGCATGGCTTCTTTTCACACCTCAGTGCCTGCAGAGCAGTGGAGAGACCAAAGCTCAGTCCCTGGAGTCTCATCCCCAGATCTCATCCACCTGCCCACCTGTCCTGTCCACCATATCCGCCAGTACCACTGCGCCAGCCAGTCCCTCCCAAGGCCTGGTGGGAGCTGGGAGGTCGGGGGTTGTGAGGCTGTGGAGAATATGCGAGAATATCAGTGTCTTTTTCGTCTTCTCAGtgcaaatttaatttatttgcgtCGCTCAAGCATTAGAGAAGCGTGTGTGAGCGCATGTGCAATGGTCACGTGGCTGTTTTGTAATGACAATCTACTACTTACCGACCAAAAGAAATGGGACGTGCCGTGGGCTGATACGGAAATCTTGTAGTCTTTTATTTCtgtggagagagaaaaatgacttcgtttattattctgttttagGATTGTAATGGAAAGTATATTTATGATATcctttatttatactttatcaTGTTAGTAATGGAACAAAGGATGTTATTAAgagatattattataattttattatttatccaAATATTTTCCACTTCCTTTCTCTCCGTACTTGAATGGGAGTGATGTAGTACAGTAGGAAATGAGAGAATTGCCTAGAGTATCAATCAATCAGTAGAATAATAGCTACAGTAagtaattaaaacacacacacacacatacatacacacatacagtagttACACTTGCCATTGCCAGGGTTCTTAACCTGGTGCTCTCTATCGCTCATTCACCATTGGGacttttataataaattatctgacaaaaaaacaaacaaaaaaaacattccaaagAAAGCATCCTGCCTCACGTCTTACATCTCAGAGGAGGAAGCGGAGGTTCTGGACACAGAGCAAGAGATAGCCTGGATAATTAGCATGGAAAAAATATCCTGCAAGTCCTGCAAGGGTTCTCTCTTGAGCATTTATGTGCACACGCGGAACGTGGACCTCTCTGATGAGCCGATTGATGCAGGAGAAGAGTGAAAACAAATATATCTTGATGTTTAGAGCTGATATTTAGTGGATTTCCATCAGCTATGCCTTCCAGTTCAGCGGGTCagctgtaaatgtgtaaatgacaatatggcAGCATCAATATAGCAATCTCAAGTGCTTCAGACATTCTTAAGGTTGCTTTCTAAGTGTTTTGGCAACATAGTGCATCAGAACACAGATAGGTCTAAGAGAGTGGTCAGAAAGAAAATCTGACTTACTTGTTTGTGCTGGTGCCAATttgtgaagaaagaaaaagtaatgAAACTTAAGATTCTTAAGATTCAGACCCCttccacactttttttttttttttttaagaaaattgattttctgcattttttttttattattattttcttttcaattcacacaaaattaaaaatgcttGTATGAGCAGACTACCCCTGTATGGGCTGACAGTACCGCTAAAAAGAGAGATCAACACACCATGAAAAAAGTAGAAAATGTTCATAATATAACAGTATTACATTTATTCAAATGTGTAAATCTGACATCTATTTTTATCTGTATGTAGGCACTTTAATTTTATGACTTATATCATTCATTATTTAAAGAGTTAGGAGACTTTTGAGATTCAGCCAGAAACATGCTTGCATGCATTATGACGTCAGCATTTTCATAAACCTCTCTTTTCCCTCTCCACTCGATAATGCTGAAAACTGAGTTATAAAGATATCTCCACTTTGAAAAGGGCATTATCaaaaagctctgtttttagTATGTGGATAAACTCTCCTCactaaataatgacttactgatTACTTggtgatcacacacacacactaaagaggCTGACTGGGAGCATTGTGAAAGACAGATAAGAAATGTATAAGATACTTATGACATTGTCAAAAGCTAAATATGATGTGTTTTGTGGTGTTGTAATGGATAAATGAGAGGAAACTGGCGAGACACAAAGGGGGTTATGTGACATAAAACACTAATAAGCCATAAATAGCTTTTAAATCACTCAGCCAAAGACGCTGGCATGATCACTGCTTAAATGAACTCAGTTgacttaatttatattataataatttgaaTTTGTTGGACTTGGAGAATGCAGGCTCTCAAAGTTCACTGTGTAGACAGTGTAACCTAACAGGTGGCTCTACTGTACCACTCTGAGGTAAAATTGTCTGCAGGAGAGCTAGTTCTACACTGCTaggcccaatcctatttcaccCACCatgtacccctaccccttcttttctaGTGTAACCCTTCCCATTGGAACAGAGTTAGAAGGGAAGGGAGTGAAATCCTCTACCTAATAATTGGGACAACCATTCAAGCCCCCGATAGATACATCAGCAGGAGTGCTAAAGTTAAAGCATTTTAGCAttatatgtcttcagaaagtggGGAGATGgtacagaaattaattattattgtccatttcttaattcctctgtgatggggagctgaaattagctttgattagcttttatttatttaatttttccatttccattttcaccatttaaggtggaactggaaagttagctagctagctatctagcttcTAATACAAACTAAGACAAAGTGATCTTTTtcatgcttgttatgaagaattcggccataaaacattgaaaccacacattaaactatggcaatatagtgctaatcgtcacttttaacaaggaaaatacttacatttgtgggcTTCTAACCAGGGATTCTTATACCCCTcagtttgaagtgtgcatctgaaaaatctctgtatgaagggCTTACAAGCCCTATCTGTTTCCCTAACCTACCCCTTCAGCCTAAAGAAAATAAGGACATCCCTACCCCTCGGCGTGCACACTCAAATCAGAGGGGTAGGGCCAATGGGTGAAATGAGATTGGGCCCTGGACTTGTAGACCTCTGGGAATTGTTCCTCATTTGGCTAGAACTGTTTTAATTGATGGGACACTGTTAGGCAGTTGTGCCACTTAGTAGCcctgacttatttatttacattaaatattagcATAGTTAGCATTTAGCATATTCAGTTATTCTGTTCCTTTTCATTTCTCTTAGTAAAGGATTTTAGGGCATTTAGTGTTAAGCtcacatacactatatacacactatatgtccaaatgtttgtggacaccaaatgcacacatgcacacacagaatGTTTAGTCACTGTagagtattgccaatagaaaagGACTCTCTGGAGAAGATTAACATGAACCTACTGGCACTTTGCCTAaagaagcagtggaactgtgttctctgaagtgatggagctccattcagTAATATTGGGATGAGTTGTAGGGGAGTTGGGATGgggatcatccaacatccagaCCTTACTAACCTTAAACCCATCATATCCAGAACCAAGCGTCAGTTAGagtagtggaactgtgttctctgaaatgatagagctccatccagtacatTGTGAGTAGGATAAGTGGGGGTGGTAGAACTAATTCAACATCAGAACCTACCTGACATCAGTGATGCTCTTGTtttggctgaatgcaatcaaatcctgacAGCCATGTTTCAGCATCTATGTGGATGATACATTAGCAAATTTATCAGTCTACAGGACTTGTCTCCAAAATGCATCAGGCTTGTTTAGATGCTTCTTTGAAAACGTCTTTATTGGCTGTTCCATGAAGGTCATATTCGTGCAGGTATCACTGCACGgtagaacagtgcaccaccaCCACTCCTGAGTCTACTAAACCTTCCTGAAGGTCTTATAAAGTCACACAGGTTAGAGTTCCACTGTGTAGCAATTTAGTTTGTGAGTATTTAGTTTGTAAAGTACCGAATACATTGATTTGATTTCAGAGAAACCCTGAagtcacacatacacactttgtGAAGTATATAGAGAACTTCTCAAGTACAAGCTTTAAGCTATATTGGCTGCAGTGTGTAAGAAGCAAGTCTATTTTATGAGGTCTCTCAGCCCTACAGTGCGTATTCTCTCCACTCGCTCATTGTCTCCGAACCTTTCCTTCAGAATCGGATGAGTATTGATGGCGGACTTTCCTCTGGGATATGTGCCTTTGTTAAAAAACAATGACCTCGTGAAACGCGGCCGCTCCTCACAGCGCCGTGTTCTCACATTACCCtgtgtgaagaagaagaaggagaaaatgGGAGTTAGAAGAGGGGAAGCGGTGTTACTGTGCCTTTTATACTGTGTTCACTGTTTTGAAGGATTTTTTGGAAGGCCACAGAGGAGCAGGTTTACTGAAGTAGGCCTCCCTCCTTCTGCAGAGTCAATGCATTTATGAGTTAGTCTACCGTGGCTTCACTGCACTCGGCTGTTATTTATTGCTCTTCTTGccgtgtatgtgtttgtattttCGTATGCTGAAGTCTGACTGAAgctgtgtgttttatagttgTAATGCAACAATCTTTCAATAAACTGCAGCTTATCAGCTtca

Function

symbol description
atp7a Predicted to enable P-type divalent copper transporter activity. Acts upstream of or within response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in perinuclear region of cytoplasm and trans-Golgi network. Is expressed in digestive system; gill; locus coeruleus; neural tube; and notochord. Used to study Menkes disease. Human ortholog(s) of this gene implicated in Menkes disease; X-linked distal spinal muscular atrophy 3; cutis laxa; and occipital horn syndrome. Orthologous to human ATP7A (ATPase copper transporting alpha).

NR:

description
PREDICTED: copper-transporting ATPase 1

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0006825 copper ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function

KEGG:

id description
K17686 copA, ctpA, ATP7; P-type Cu+ transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671999.1 True 9380 mRNA 0.47 24 5430689 5476431

Neighbor

gene id symbol gene type direction distance location
atp10b NA coding upstream 22674 5339650 ~ 5408015 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding upstream 117031 5182503 ~ 5313658 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding upstream 257433 5143765 ~ 5173256 (+)
ccng1 ccng1,LOC107745080 coding upstream 300132 5123954 ~ 5130557 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding upstream 312850 5091878 ~ 5117839 (+)
LOC103038898 NA coding downstream 3957 5480388 ~ 5485164 (+)
LOC103044251 NA coding downstream 14991 5491422 ~ 5494564 (+)
LOC103037091 NA coding downstream 220488 5696919 ~ 5731315 (+)
tmem173 NA coding downstream 485849 5962280 ~ 5987766 (+)
LOC103031741 NA coding downstream 532130 6008561 ~ 6011401 (+)
G71411 NA non-coding upstream 20376 5409031 ~ 5410313 (+)
G71397 NA non-coding upstream 105802 5323669 ~ 5324887 (+)
G71304 NA non-coding upstream 132368 5295678 ~ 5298321 (+)
G71294 NA non-coding upstream 223612 5205216 ~ 5207077 (+)
G71287 nudcd2 non-coding upstream 293122 5133735 ~ 5137567 (+)
G71473 NA non-coding downstream 51565 5527996 ~ 5532969 (+)
G71474 NA non-coding downstream 52024 5528455 ~ 5532295 (+)
G71489 NA non-coding downstream 126689 5603120 ~ 5603321 (+)
G71490 NA non-coding downstream 131287 5607718 ~ 5607946 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding downstream 323972 5800403 ~ 5859364 (+)
G71247 NA other upstream 450678 4956298 ~ 4980011 (+)
G71249 NA other upstream 462782 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 508869 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 988758 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1855931 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 23477 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 196287 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 394659 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1049210 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1405156 6881587 ~ 6885541 (+)

Expression


Co-expression Network