LOC103035351 (ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155)


Basic Information

Item Value
gene id LOC103035351
gene name ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5844641 ~ 5859370 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672008.1
GCGTGATCCggcatctgctgctgctgttgcggGAGGAAGAGCCGCTTTACTCTCTCTGTGCTTTTTAGCCGAGCTGCCCCTTTCAGTTTCGCCTTGAGAAAAAGACGTTTTCTCCCCGTATCGACCGGCTCCATCAGGCCGCCTTGATCCGAGGGACTGTCAGGTTTAGGTTGCGAGGTGGTCGGTGTCGGTTTAGAGGGAACCAGTCGGCGTTTTGGCCTTTTTAAATCGAGCGTAGTTCGGTTTCGGTGACAGCAGCACAGGAACAACAATGGCTCTGAAGAGAATTCATAAGGAACTGCACGACTTGGGCCGTGACCCACCTGCTCAGTGCTCAGCAGGGCCAGTAGGGGATGACATGTTTCACTGGCAGGCCACAATAATGGGACCAAATGACAGTCCTTACCAGGGTGGGGTGTTCTTCTTGACCATTCACTTTCCCACAGATTACCCCTTCAAACCGCCAAAGgttgcaTTCACCACAAGAATCTACCACCCAAATATCAACAGCAATGGCAGCATCTGTCTGGATATTCTAAGGTCTCAGTGGTCACCTGCCCTCACCATCTCCAAAGTACTCTTGTCAATCTGCTCTCTGCTGTGCGACCCCAATCCGGATGACCCCTTAGTACCCGAGATTGCCCGCATCTACAAGACTGACAGGGAAAAGTACAACAGAATAGCTCGGGAATGGACACAAAAGTATGCAATGTAGTTTTGGAGTTAGAATCATGGCGGGAAAAAAATTTACACCTCTCCATCTTAAGGTTAGGGGAGATTTGAAAGtttaagagataaaaaaaaaaaaaaaaagctaaagaaaaaaaaacagatcttgTTGGTTTCCATTGGAGTGCTTTCTTTAAGCCACGCCTCCCCTCACCAGAGCACCTCCCCCCCACTCCCCACCTTACCCCACCCTCCTGGTAGCCATGGTGTACATACTTTCAAACTTCGACTGTAGCTCAAATCCAGCTGTTTTCCCTCCACCCCACCAACTCCCCCACccgaaaacaaacaaacgaaaaaTCTTCGCTCCATGTCTCTTGCTTTACCGTCTCCGTCGCAGCAATGGTGACGTGCCTGCTGCTTAGGGTCAGCCAGTCTCAATTTTTGCAGTTGAAAATCTTCATGACTCTAAAAGCATTCCTTGTTTTTAAGCACTGGGGAGGGAGGgaaattctttttctttttgtttttcttttttttcttatctccCCTGTTTTGTGATTATAGTGGAAATTGAGGGATACgttctttacatttttccatttattcCGTTTCCTGGGCTTCCAGATGTATCTTGGATCAGGAAaagggtttattttttttatttttattttttgttttgttccttTCTATTGACTGAGGGGGGAGGGGTGTATGCTGGCTATCTTTTGTATAAAATCTATAAGGAATTCTTTTAAAATCATAGCAGGTTTATTAATGGCAAAATGTCGGACCTTTGGGTCCTCTCTTCTGGATCATTCTAAAGGACTTGAATACTATGAATATAagttactttttgtttttccatttgCCATAACCAAGACTGTCTTTACCCCTTCCCTTAGCCACGACCAATTCAGCATCATTCTCACTGTTCTCGAGAATTTTGGACCAGTTATTTAAAGCAGAATCTTAGTTAAGCACGTGTTATGagtttacttttttgttgtttttcttctccTGCCCCCCCCAATAACTCTTAGTTCCATTttagctgcattttttttgtttcccctCTGCTCTTGTTGAAATTAGATGCTAACATGGCTGAGACAGACTCGATTGGGTCCCCGGGTGAGAGGACACAACTCCTCACAGACAAActtctgtatatttaatttccTGACAGGCTCGTTGAGCTTTGTGTGTTGATTAAAACTGTGTAATAAAATGATTACTAAAGTCTGA

Function

symbol description
ube2d2 Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be active in nucleus. Orthologous to several human genes including UBE2D2 (ubiquitin conjugating enzyme E2 D2).
ube2d2l Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in protein K48-linked ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D2 (ubiquitin conjugating enzyme E2 D2).
ube2d1 Enables ubiquitin conjugating enzyme activity and ubiquitin protein ligase activity. Involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytoplasm. Part of ubiquitin ligase complex.

NR:

description
ubiquitin-conjugating enzyme E2 D2

GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672008.1 True 1917 mRNA 0.44 7 5844641 5859370

Neighbor

gene id symbol gene type direction distance location
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding downstream 43917 5770787 ~ 5800724 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding downstream 248616 5531871 ~ 5596025 (-)
gstp1 gstp1 coding downstream 332912 5500015 ~ 5511729 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding downstream 421759 5411716 ~ 5422882 (-)
nudcd2 nudcd2 coding downstream 707028 5130602 ~ 5137613 (-)
LOC103032061 LOC108436848,LOC107680293 coding upstream 152849 6012219 ~ 6036754 (-)
LOC103043333 LOC108442486,LOC108275354 coding upstream 302285 6161655 ~ 6221853 (-)
hars hars,LOC106611772,LOC107660169 coding upstream 434314 6293684 ~ 6315841 (-)
LOC103036141 LOC108430946 coding upstream 662687 6522057 ~ 6538782 (-)
LOC103027842 LOC108430992,LOC104947123,LOC107094991,LOC106517448,LOC103354384,LOC106905160,LOC108240514 coding upstream 711446 6570816 ~ 6583742 (-)
G71501 NA non-coding downstream 164531 5679805 ~ 5680110 (-)
G71496 NA non-coding downstream 165768 5642890 ~ 5678873 (-)
G71488 NA non-coding downstream 244689 5599714 ~ 5599952 (-)
G71472 NA non-coding downstream 316767 5527659 ~ 5527874 (-)
G71464 gdf9 non-coding downstream 352700 5490363 ~ 5491941 (-)
G71554 NA non-coding upstream 6935 5866305 ~ 5866528 (-)
G71577 NA non-coding upstream 95250 5954620 ~ 5967921 (-)
G71612 NA non-coding upstream 227469 6086839 ~ 6087111 (-)
G71636 NA non-coding upstream 294521 6153891 ~ 6178020 (-)
G71644 NA non-coding upstream 412881 6272251 ~ 6291512 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 2934 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 368266 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 920570 4924000 ~ 4924071 (-)
G71235 NA other downstream 960153 4882170 ~ 4884488 (-)
G71175 NA other downstream 1431630 4411948 ~ 4413011 (-)
G71771 NA other upstream 917869 6777239 ~ 6824756 (-)
G71826 NA other upstream 1197740 7057110 ~ 7057643 (-)
G71862 NA other upstream 1450405 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 1691815 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 1914525 7773895 ~ 7842280 (-)

Expression


Co-expression Network